zr2096_8_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8727936 lines in total Total number of methylation call strings processed: 17455872 Final Cytosine Methylation Report ================================= Total number of C's analysed: 223405198 Total methylated C's in CpG context: 17003347 Total methylated C's in CHG context: 1714400 Total methylated C's in CHH context: 7367274 Total C to T conversions in CpG context: 9662409 Total C to T conversions in CHG context: 46581820 Total C to T conversions in CHH context: 141075948 C methylated in CpG context: 63.8% C methylated in CHG context: 3.5% C methylated in CHH context: 5.0%