CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 122491 73287 62.57 195778 2 161603 92547 63.59 254150 3 157519 103358 60.38 260877 4 110652 100572 52.39 211224 5 97215 94386 50.74 191601 6 69051 67307 50.64 136358 7 76204 61851 55.20 138055 8 85830 64424 57.12 150254 9 90308 67054 57.39 157362 10 92999 62055 59.98 155054 11 107723 64356 62.60 172079 12 120679 66264 64.55 186943 13 113916 65422 63.52 179338 14 106076 63753 62.46 169829 15 108233 65762 62.20 173995 16 109831 66350 62.34 176181 17 118019 77513 60.36 195532 18 114058 67561 62.80 181619 19 113844 66513 63.12 180357 20 117070 67479 63.44 184549 21 119570 68722 63.50 188292 22 117816 67162 63.69 184978 23 118239 66402 64.04 184641 24 119274 67742 63.78 187016 25 121630 66853 64.53 188483 26 120448 66348 64.48 186796 27 121302 67988 64.08 189290 28 121521 66479 64.64 188000 29 121973 66257 64.80 188230 30 123086 66127 65.05 189213 31 123838 66045 65.22 189883 32 122938 66400 64.93 189338 33 123627 66484 65.03 190111 34 124532 65740 65.45 190272 35 126949 66739 65.54 193688 36 125633 67121 65.18 192754 37 125262 65454 65.68 190716 38 127097 66635 65.60 193732 39 127154 66463 65.67 193617 40 125823 65487 65.77 191310 41 129322 67268 65.78 196590 42 130130 66768 66.09 196898 43 129346 65726 66.31 195072 44 132906 66870 66.53 199776 45 131414 66275 66.48 197689 46 130450 64754 66.83 195204 47 131251 65390 66.75 196641 48 132425 66274 66.65 198699 49 132648 65507 66.94 198155 50 134771 67136 66.75 201907 51 131251 65663 66.65 196914 52 129906 64561 66.80 194467 53 130650 64444 66.97 195094 54 131498 65321 66.81 196819 55 131234 64856 66.93 196090 56 131959 65712 66.76 197671 57 133460 66276 66.82 199736 58 131690 64410 67.15 196100 59 130931 64851 66.88 195782 60 130538 64878 66.80 195416 61 129440 63705 67.02 193145 62 129975 63932 67.03 193907 63 129597 64315 66.83 193912 64 130319 64529 66.88 194848 65 131305 64849 66.94 196154 66 132113 65754 66.77 197867 67 132198 66307 66.60 198505 68 130375 63999 67.07 194374 69 128501 64649 66.53 193150 70 128064 64010 66.67 192074 71 128779 64138 66.75 192917 72 127861 63979 66.65 191840 73 127162 63423 66.72 190585 74 127812 63831 66.69 191643 75 127177 63886 66.56 191063 76 126556 63166 66.71 189722 77 126087 63970 66.34 190057 78 126203 63789 66.43 189992 79 124685 63068 66.41 187753 80 124895 64230 66.04 189125 81 124909 64196 66.05 189105 82 123911 64250 65.85 188161 83 123454 64199 65.79 187653 84 122734 64802 65.45 187536 85 121118 62584 65.93 183702 86 119987 62852 65.62 182839 87 120813 63024 65.72 183837 88 119823 63540 65.35 183363 89 118928 62472 65.56 181400 90 118365 62585 65.41 180950 91 118052 62244 65.48 180296 92 116448 61813 65.32 178261 93 115718 63008 64.75 178726 94 112926 60992 64.93 173918 95 111288 61198 64.52 172486 96 110135 61585 64.14 171720 97 107589 60531 64.00 168120 98 97804 57842 62.84 155646 99 79345 52629 60.12 131974 100 21568 31714 40.48 53282 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 106928 509187 17.36 616115 2 55558 173610 24.24 229168 3 56410 259086 17.88 315496 4 31853 317802 9.11 349655 5 18197 393308 4.42 411505 6 12788 443618 2.80 456406 7 11819 285666 3.97 297485 8 12416 277470 4.28 289886 9 11686 282681 3.97 294367 10 15274 282971 5.12 298245 11 22872 283200 7.47 306072 12 12141 297162 3.93 309303 13 12171 303485 3.86 315656 14 10643 301891 3.41 312534 15 12569 298649 4.04 311218 16 14219 304905 4.46 319124 17 10840 310590 3.37 321430 18 11002 330878 3.22 341880 19 10641 310235 3.32 320876 20 10127 312147 3.14 322274 21 10087 313100 3.12 323187 22 9955 315129 3.06 325084 23 10138 309953 3.17 320091 24 9289 310971 2.90 320260 25 9657 325158 2.88 334815 26 9443 322136 2.85 331579 27 9205 318273 2.81 327478 28 9234 326911 2.75 336145 29 9150 324809 2.74 333959 30 8839 324254 2.65 333093 31 8844 328211 2.62 337055 32 8473 323974 2.55 332447 33 8676 331436 2.55 340112 34 8724 332914 2.55 341638 35 8173 328839 2.43 337012 36 8335 329995 2.46 338330 37 8331 338784 2.40 347115 38 8110 333662 2.37 341772 39 8470 343330 2.41 351800 40 7896 335365 2.30 343261 41 7938 341671 2.27 349609 42 7766 341098 2.23 348864 43 7991 346391 2.25 354382 44 7952 336296 2.31 344248 45 7814 340609 2.24 348423 46 7421 341526 2.13 348947 47 7376 336048 2.15 343424 48 7464 339645 2.15 347109 49 7383 345754 2.09 353137 50 7309 342322 2.09 349631 51 7412 344379 2.11 351791 52 7289 345685 2.07 352974 53 7199 342303 2.06 349502 54 7213 339125 2.08 346338 55 7377 344827 2.09 352204 56 7116 340613 2.05 347729 57 7440 344219 2.12 351659 58 7118 340904 2.05 348022 59 7048 339604 2.03 346652 60 7056 338738 2.04 345794 61 7297 342303 2.09 349600 62 6914 338213 2.00 345127 63 7175 337987 2.08 345162 64 6986 338497 2.02 345483 65 7217 337917 2.09 345134 66 7138 338324 2.07 345462 67 7328 344415 2.08 351743 68 7205 336190 2.10 343395 69 7594 335399 2.21 342993 70 7055 338227 2.04 345282 71 6911 332364 2.04 339275 72 7193 333156 2.11 340349 73 6892 335143 2.01 342035 74 6865 330316 2.04 337181 75 6958 332066 2.05 339024 76 6853 330109 2.03 336962 77 7066 329059 2.10 336125 78 7151 328138 2.13 335289 79 7125 326742 2.13 333867 80 7012 324081 2.12 331093 81 7442 324308 2.24 331750 82 6996 323936 2.11 330932 83 7283 322540 2.21 329823 84 7053 320650 2.15 327703 85 7572 322512 2.29 330084 86 7263 318797 2.23 326060 87 7142 316345 2.21 323487 88 7188 319014 2.20 326202 89 7300 315451 2.26 322751 90 7597 313839 2.36 321436 91 7287 312702 2.28 319989 92 7380 310958 2.32 318338 93 7583 311384 2.38 318967 94 8055 316791 2.48 324846 95 7995 307216 2.54 315211 96 8065 304836 2.58 312901 97 8411 304293 2.69 312704 98 8625 300159 2.79 308784 99 8368 293719 2.77 302087 100 4599 238984 1.89 243583 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 229665 430453 34.79 660118 2 230442 560006 29.15 790448 3 180585 522284 25.69 702869 4 130475 607409 17.68 737884 5 79484 782055 9.23 861539 6 68825 907454 7.05 976279 7 66927 1052406 5.98 1119333 8 71399 1047919 6.38 1119318 9 56847 972757 5.52 1029604 10 57112 967872 5.57 1024984 11 62447 946402 6.19 1008849 12 57401 943918 5.73 1001319 13 56536 989454 5.41 1045990 14 55905 990270 5.34 1046175 15 58184 981521 5.60 1039705 16 61533 937718 6.16 999251 17 55598 948481 5.54 1004079 18 52440 948198 5.24 1000638 19 56238 975387 5.45 1031625 20 53668 988161 5.15 1041829 21 51570 948847 5.15 1000417 22 50972 949616 5.09 1000588 23 52930 957568 5.24 1010498 24 47416 964658 4.69 1012074 25 49563 982572 4.80 1032135 26 48608 993951 4.66 1042559 27 47022 988595 4.54 1035617 28 46176 1004042 4.40 1050218 29 47844 1007803 4.53 1055647 30 44349 1006572 4.22 1050921 31 46198 1017224 4.34 1063422 32 44809 1002418 4.28 1047227 33 43943 1016288 4.14 1060231 34 44559 1017190 4.20 1061749 35 43854 1027097 4.09 1070951 36 41448 1022266 3.90 1063714 37 42558 1026218 3.98 1068776 38 41067 1028580 3.84 1069647 39 40381 1020283 3.81 1060664 40 39543 1022450 3.72 1061993 41 41234 1061493 3.74 1102727 42 37763 1027489 3.54 1065252 43 40237 1028957 3.76 1069194 44 38894 1041420 3.60 1080314 45 37840 1048983 3.48 1086823 46 36805 1045202 3.40 1082007 47 37153 1054185 3.40 1091338 48 34959 1044383 3.24 1079342 49 35793 1054126 3.28 1089919 50 35260 1062192 3.21 1097452 51 34830 1061430 3.18 1096260 52 34181 1051322 3.15 1085503 53 34394 1057575 3.15 1091969 54 32464 1041417 3.02 1073881 55 33292 1036559 3.11 1069851 56 32843 1054708 3.02 1087551 57 32916 1049056 3.04 1081972 58 32757 1066975 2.98 1099732 59 33156 1072557 3.00 1105713 60 30677 1034359 2.88 1065036 61 32534 1029473 3.06 1062007 62 31589 1052456 2.91 1084045 63 30593 1017721 2.92 1048314 64 30705 1014220 2.94 1044925 65 31152 1018758 2.97 1049910 66 29781 1018325 2.84 1048106 67 30851 1029434 2.91 1060285 68 30181 1014370 2.89 1044551 69 31191 1023092 2.96 1054283 70 30097 1014129 2.88 1044226 71 29990 1005048 2.90 1035038 72 29644 1002296 2.87 1031940 73 29682 1008786 2.86 1038468 74 29590 1024816 2.81 1054406 75 28650 999608 2.79 1028258 76 29323 995600 2.86 1024923 77 29235 1000411 2.84 1029646 78 29104 1015231 2.79 1044335 79 29212 1007503 2.82 1036715 80 28786 992645 2.82 1021431 81 29744 987790 2.92 1017534 82 29134 993102 2.85 1022236 83 29202 973977 2.91 1003179 84 27990 964365 2.82 992355 85 30114 959710 3.04 989824 86 29504 962032 2.98 991536 87 28622 958152 2.90 986774 88 29154 965460 2.93 994614 89 29737 961501 3.00 991238 90 28682 942888 2.95 971570 91 29582 940549 3.05 970131 92 29408 937424 3.04 966832 93 29318 930831 3.05 960149 94 30255 931835 3.14 962090 95 31011 934723 3.21 965734 96 31195 937237 3.22 968432 97 32612 930309 3.39 962921 98 32788 912043 3.47 944831 99 28900 891952 3.14 920852 100 16053 751268 2.09 767321 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 109072 72832 59.96 181904 2 140891 87583 61.67 228474 3 137886 96195 58.91 234081 4 94339 87422 51.90 181761 5 80272 85709 48.36 165981 6 58716 60230 49.36 118946 7 61098 55191 52.54 116289 8 70478 56864 55.35 127342 9 72790 56794 56.17 129584 10 74723 52631 58.67 127354 11 84007 53180 61.24 137187 12 95593 54407 63.73 150000 13 91350 52850 63.35 144200 14 80706 51209 61.18 131915 15 80742 50710 61.42 131452 16 81235 50761 61.54 131996 17 86242 60449 58.79 146691 18 81145 49674 62.03 130819 19 78612 47652 62.26 126264 20 79728 47805 62.52 127533 21 79778 47780 62.54 127558 22 76871 46346 62.39 123217 23 76026 43894 63.40 119920 24 75816 44765 62.88 120581 25 76741 43473 63.84 120214 26 73680 42486 63.43 116166 27 72020 42506 62.89 114526 28 70921 40868 63.44 111789 29 69399 40281 63.27 109680 30 68799 39426 63.57 108225 31 67509 38141 63.90 105650 32 66068 37202 63.98 103270 33 65031 36978 63.75 102009 34 64275 35962 64.12 100237 35 63985 35513 64.31 99498 36 61092 35323 63.36 96415 37 60026 33534 64.16 93560 38 59852 33620 64.03 93472 39 58665 33011 63.99 91676 40 56481 31767 64.00 88248 41 57207 32191 63.99 89398 42 56482 31174 64.44 87656 43 55492 29867 65.01 85359 44 56121 29985 65.18 86106 45 53300 29360 64.48 82660 46 51846 27628 65.24 79474 47 50707 27433 64.89 78140 48 49928 27232 64.71 77160 49 49874 26845 65.01 76719 50 49649 27206 64.60 76855 51 46409 25881 64.20 72290 52 45347 24592 64.84 69939 53 43853 24351 64.30 68204 54 43322 23846 64.50 67168 55 42685 23733 64.27 66418 56 41950 23436 64.16 65386 57 41094 23317 63.80 64411 58 39698 22054 64.29 61752 59 38618 21418 64.32 60036 60 37675 20961 64.25 58636 61 36161 20145 64.22 56306 62 35668 19573 64.57 55241 63 34684 19184 64.39 53868 64 33968 19192 63.90 53160 65 33657 19335 63.51 52992 66 33062 19059 63.43 52121 67 33510 18844 64.01 52354 68 31254 17495 64.11 48749 69 30151 17460 63.33 47611 70 29140 16721 63.54 45861 71 28719 16401 63.65 45120 72 27514 16069 63.13 43583 73 27307 15729 63.45 43036 74 27042 15141 64.11 42183 75 25926 14991 63.36 40917 76 24977 15139 62.26 40116 77 24341 14624 62.47 38965 78 23437 13878 62.81 37315 79 22807 13773 62.35 36580 80 22293 13590 62.13 35883 81 21925 13128 62.55 35053 82 21003 12887 61.97 33890 83 20313 12630 61.66 32943 84 19680 12332 61.48 32012 85 18871 11414 62.31 30285 86 18539 10997 62.77 29536 87 17953 11119 61.75 29072 88 17655 10982 61.65 28637 89 17095 10304 62.39 27399 90 16679 10212 62.02 26891 91 16208 9648 62.69 25856 92 15262 9404 61.87 24666 93 14883 9511 61.01 24394 94 14232 8892 61.55 23124 95 13526 8579 61.19 22105 96 13212 8367 61.23 21579 97 12351 7850 61.14 20201 98 10739 7070 60.30 17809 99 8570 6411 57.21 14981 100 2284 3804 37.52 6088 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 97463 526415 15.62 623878 2 46019 175798 20.75 221817 3 45914 235982 16.29 281896 4 28230 287412 8.94 315642 5 17354 360917 4.59 378271 6 11748 395527 2.88 407275 7 11025 252792 4.18 263817 8 11101 239099 4.44 250200 9 10273 241043 4.09 251316 10 13335 235287 5.36 248622 11 21114 230225 8.40 251339 12 10400 237894 4.19 248294 13 10528 241600 4.18 252128 14 8921 236312 3.64 245233 15 10538 228025 4.42 238563 16 12551 226545 5.25 239096 17 8495 228397 3.59 236892 18 8848 241263 3.54 250111 19 8169 218806 3.60 226975 20 7532 215011 3.38 222543 21 7410 212412 3.37 219822 22 6940 209829 3.20 216769 23 7020 202180 3.36 209200 24 6436 199339 3.13 205775 25 6533 204037 3.10 210570 26 6262 199015 3.05 205277 27 6078 191638 3.07 197716 28 5961 192888 3.00 198849 29 5800 188519 2.98 194319 30 5321 184412 2.80 189733 31 5550 182677 2.95 188227 32 5116 176570 2.82 181686 33 5027 178230 2.74 183257 34 4877 175192 2.71 180069 35 4792 168451 2.77 173243 36 4535 165697 2.66 170232 37 4617 168588 2.67 173205 38 4318 161460 2.60 165778 39 4495 164483 2.66 168978 40 4012 155139 2.52 159151 41 4107 155511 2.57 159618 42 3804 152676 2.43 156480 43 3868 152773 2.47 156641 44 3546 144249 2.40 147795 45 3383 143802 2.30 147185 46 3298 139574 2.31 142872 47 3321 134465 2.41 137786 48 3249 134233 2.36 137482 49 3179 133623 2.32 136802 50 2930 129998 2.20 132928 51 3108 129040 2.35 132148 52 2903 125426 2.26 128329 53 2733 122823 2.18 125556 54 2659 117742 2.21 120401 55 2824 117189 2.35 120013 56 2506 114095 2.15 116601 57 2538 113986 2.18 116524 58 2537 107519 2.31 110056 59 2472 105422 2.29 107894 60 2281 102541 2.18 104822 61 2284 101601 2.20 103885 62 2195 98759 2.17 100954 63 2324 96117 2.36 98441 64 2251 93822 2.34 96073 65 2138 92183 2.27 94321 66 2145 89526 2.34 91671 67 2278 91031 2.44 93309 68 1993 86254 2.26 88247 69 2032 83797 2.37 85829 70 1958 82542 2.32 84500 71 1942 78770 2.41 80712 72 1833 77257 2.32 79090 73 1850 76309 2.37 78159 74 1818 73782 2.40 75600 75 1771 72272 2.39 74043 76 1716 70476 2.38 72192 77 1633 67891 2.35 69524 78 1699 66870 2.48 68569 79 1577 64453 2.39 66030 80 1623 62515 2.53 64138 81 1607 60439 2.59 62046 82 1503 58605 2.50 60108 83 1512 58051 2.54 59563 84 1470 55787 2.57 57257 85 1372 55028 2.43 56400 86 1340 52821 2.47 54161 87 1356 51320 2.57 52676 88 1354 50605 2.61 51959 89 1321 48843 2.63 50164 90 1266 47054 2.62 48320 91 1229 45878 2.61 47107 92 1252 44626 2.73 45878 93 1202 43704 2.68 44906 94 1198 44521 2.62 45719 95 1137 40268 2.75 41405 96 1117 38651 2.81 39768 97 1035 37574 2.68 38609 98 924 35824 2.51 36748 99 887 33749 2.56 34636 100 350 25870 1.33 26220 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 195143 438405 30.80 633548 2 196034 570486 25.57 766520 3 155294 527573 22.74 682867 4 117389 582328 16.78 699717 5 73834 731970 9.16 805804 6 63659 827619 7.14 891278 7 61272 936360 6.14 997632 8 64508 919262 6.56 983770 9 50043 839997 5.62 890040 10 50110 825518 5.72 875628 11 55395 787566 6.57 842961 12 49838 768657 6.09 818495 13 47897 791630 5.71 839527 14 46437 783062 5.60 829499 15 50074 763178 6.16 813252 16 53615 712367 7.00 765982 17 45626 711940 6.02 757566 18 42496 702659 5.70 745155 19 45914 713951 6.04 759865 20 42356 709472 5.63 751828 21 40509 664517 5.75 705026 22 38725 654191 5.59 692916 23 39749 646264 5.79 686013 24 35530 638190 5.27 673720 25 37298 639240 5.51 676538 26 35195 637287 5.23 672482 27 34388 619660 5.26 654048 28 33125 621080 5.06 654205 29 33697 609385 5.24 643082 30 30675 601526 4.85 632201 31 31960 599814 5.06 631774 32 30146 574798 4.98 604944 33 29343 574316 4.86 603659 34 28627 563327 4.84 591954 35 28996 557346 4.95 586342 36 26399 545904 4.61 572303 37 27417 535637 4.87 563054 38 25403 529035 4.58 554438 39 24887 515339 4.61 540226 40 24134 509230 4.52 533364 41 25187 523152 4.59 548339 42 21668 490770 4.23 512438 43 22869 481117 4.54 503986 44 21330 478646 4.27 499976 45 20983 470841 4.27 491824 46 19931 461576 4.14 481507 47 20347 458394 4.25 478741 48 18335 444743 3.96 463078 49 18230 439415 3.98 457645 50 17587 436185 3.88 453772 51 16926 427891 3.81 444817 52 16325 414649 3.79 430974 53 16194 408385 3.81 424579 54 15101 391484 3.71 406585 55 15167 379319 3.84 394486 56 14963 381531 3.77 396494 57 14095 372453 3.65 386548 58 14323 377359 3.66 391682 59 13884 370442 3.61 384326 60 12687 343569 3.56 356256 61 12612 333640 3.64 346252 62 12670 340324 3.59 352994 63 12125 314142 3.72 326267 64 11613 305591 3.66 317204 65 11611 303158 3.69 314769 66 10821 298146 3.50 308967 67 11774 295726 3.83 307500 68 10624 281144 3.64 291768 69 10413 282813 3.55 293226 70 10061 270037 3.59 280098 71 10321 257528 3.85 267849 72 9618 255603 3.63 265221 73 9540 252117 3.65 261657 74 9298 252596 3.55 261894 75 8851 236862 3.60 245713 76 8711 229102 3.66 237813 77 8479 228262 3.58 236741 78 8485 232432 3.52 240917 79 8627 223398 3.72 232025 80 8022 211489 3.65 219511 81 7893 206057 3.69 213950 82 7616 203871 3.60 211487 83 7540 191358 3.79 198898 84 6975 184887 3.64 191862 85 6833 179474 3.67 186307 86 6472 176202 3.54 182674 87 6512 170682 3.68 177194 88 6575 169498 3.73 176073 89 6507 164376 3.81 170883 90 5869 152666 3.70 158535 91 5885 148592 3.81 154477 92 5698 143524 3.82 149222 93 5251 139460 3.63 144711 94 5270 136706 3.71 141976 95 5174 134031 3.72 139205 96 4742 132210 3.46 136952 97 4709 128267 3.54 132976 98 4330 120198 3.48 124528 99 3423 116274 2.86 119697 100 1591 91677 1.71 93268