/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_8_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_8_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
29761837
Paired-end alignments with a unique best hit
9031924
Pairs without alignments under any condition
18352667
Pairs that did not map uniquely
2377246
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
319685131
Methylated C's in CpG context
25081844
Methylated C's in CHG context
2220090
Methylated C's in CHH context
9298556
Methylated C's in Unknown context
1029157
Unmethylated C's in CpG context
13629344
Unmethylated C's in CHG context
67667514
Unmethylated C's in CHH context
201787783
Unmethylated C's in Unknown context
4326319
Percentage methylation (CpG context)
64.8%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
4.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2310227
original top strand
CTOT
2208932
complementary to original top strand
CTOB
2211243
complementary to original bottom strand
OB
2301517
original bottom strand
Deduplication
Alignments analysed
9031919
Unique alignments
8727936
Duplicates removed
303983
Duplicated alignments were found at 261034 different positions
