zr2096_7_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9955889 lines in total Total number of methylation call strings processed: 19911778 Final Cytosine Methylation Report ================================= Total number of C's analysed: 259380298 Total methylated C's in CpG context: 22460519 Total methylated C's in CHG context: 2034052 Total methylated C's in CHH context: 7897415 Total C to T conversions in CpG context: 10024937 Total C to T conversions in CHG context: 54122929 Total C to T conversions in CHH context: 162840446 C methylated in CpG context: 69.1% C methylated in CHG context: 3.6% C methylated in CHH context: 4.6%