CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 155320 82073 65.43 237393 2 204621 98626 67.48 303247 3 204030 109988 64.97 314018 4 140400 110150 56.04 250550 5 125118 99270 55.76 224388 6 88553 70698 55.61 159251 7 99725 66945 59.83 166670 8 109646 68357 61.60 178003 9 117634 70760 62.44 188394 10 120692 65910 64.68 186602 11 140764 68173 67.37 208937 12 159309 69801 69.53 229110 13 148910 68840 68.39 217750 14 139363 67134 67.49 206497 15 142021 67848 67.67 209869 16 144590 69277 67.61 213867 17 153475 80578 65.57 234053 18 149577 70349 68.01 219926 19 148406 68912 68.29 217318 20 154691 70428 68.72 225119 21 156735 71273 68.74 228008 22 154830 69493 69.02 224323 23 156075 68371 69.54 224446 24 157048 70312 69.07 227360 25 159514 69739 69.58 229253 26 158723 68942 69.72 227665 27 160051 70594 69.39 230645 28 159637 68569 69.95 228206 29 160743 68578 70.10 229321 30 160995 68589 70.12 229584 31 162344 67826 70.53 230170 32 161630 67221 70.63 228851 33 163356 67501 70.76 230857 34 164321 66829 71.09 231150 35 166368 68042 70.97 234410 36 165607 68275 70.81 233882 37 164344 67140 71.00 231484 38 167025 67745 71.14 234770 39 167039 67438 71.24 234477 40 165450 66457 71.34 231907 41 170838 68797 71.29 239635 42 170976 67641 71.65 238617 43 170391 66335 71.98 236726 44 174207 67886 71.96 242093 45 173203 66644 72.21 239847 46 171170 65483 72.33 236653 47 172486 66220 72.26 238706 48 174365 67164 72.19 241529 49 175974 66411 72.60 242385 50 177825 67904 72.37 245729 51 173770 66732 72.25 240502 52 170883 65095 72.41 235978 53 172975 65302 72.59 238277 54 174021 66004 72.50 240025 55 172497 65356 72.52 237853 56 174662 66356 72.47 241018 57 175395 67461 72.22 242856 58 173873 65584 72.61 239457 59 173848 65462 72.65 239310 60 173219 65751 72.49 238970 61 171246 64679 72.58 235925 62 172144 65046 72.58 237190 63 172119 65034 72.58 237153 64 172687 65140 72.61 237827 65 174150 65959 72.53 240109 66 174573 67222 72.20 241795 67 175321 67272 72.27 242593 68 171484 65907 72.24 237391 69 170445 66463 71.95 236908 70 169889 64798 72.39 234687 71 170921 65731 72.22 236652 72 169461 64802 72.34 234263 73 168760 64333 72.40 233093 74 169852 64617 72.44 234469 75 168705 64862 72.23 233567 76 166243 64832 71.94 231075 77 167039 64412 72.17 231451 78 166795 65487 71.81 232282 79 165570 64935 71.83 230505 80 166363 65668 71.70 232031 81 165652 65875 71.55 231527 82 164527 66080 71.35 230607 83 162866 65562 71.30 228428 84 162142 65780 71.14 227922 85 160242 64731 71.23 224973 86 159566 64466 71.22 224032 87 159755 65362 70.97 225117 88 159050 65745 70.75 224795 89 158051 64648 70.97 222699 90 156530 64751 70.74 221281 91 154782 64363 70.63 219145 92 153842 64306 70.52 218148 93 151269 64789 70.01 216058 94 148745 63111 70.21 211856 95 146740 63848 69.68 210588 96 145058 64588 69.19 209646 97 141622 62924 69.24 204546 98 127561 60282 67.91 187843 99 104304 55670 65.20 159974 100 28309 34127 45.34 62436 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 123083 575758 17.61 698841 2 65550 201799 24.52 267349 3 66119 301448 17.99 367567 4 37791 370174 9.26 407965 5 22207 457474 4.63 479681 6 15356 514543 2.90 529899 7 13914 331721 4.03 345635 8 14878 320284 4.44 335162 9 13934 325204 4.11 339138 10 18453 328312 5.32 346765 11 28058 329796 7.84 357854 12 14569 343732 4.07 358301 13 14511 351196 3.97 365707 14 12815 351913 3.51 364728 15 14785 345656 4.10 360441 16 17091 354733 4.60 371824 17 12822 360439 3.44 373261 18 13524 382100 3.42 395624 19 12343 358949 3.32 371292 20 12149 360385 3.26 372534 21 12094 362370 3.23 374464 22 11451 365624 3.04 377075 23 11815 358115 3.19 369930 24 11387 359562 3.07 370949 25 11311 373803 2.94 385114 26 11217 372644 2.92 383861 27 11031 368136 2.91 379167 28 10789 378909 2.77 389698 29 10841 374960 2.81 385801 30 10257 374854 2.66 385111 31 10440 380177 2.67 390617 32 10057 375209 2.61 385266 33 10009 382166 2.55 392175 34 10393 385566 2.62 395959 35 9735 380491 2.49 390226 36 9809 379798 2.52 389607 37 9764 391597 2.43 401361 38 9701 387143 2.44 396844 39 9859 396443 2.43 406302 40 9260 386877 2.34 396137 41 9476 396503 2.33 405979 42 9233 394810 2.29 404043 43 9463 400129 2.31 409592 44 9374 389706 2.35 399080 45 8935 394610 2.21 403545 46 8830 395752 2.18 404582 47 8755 388606 2.20 397361 48 8780 393865 2.18 402645 49 8698 401348 2.12 410046 50 8767 397803 2.16 406570 51 8607 398437 2.11 407044 52 8463 399014 2.08 407477 53 8424 396529 2.08 404953 54 8564 393561 2.13 402125 55 8505 400332 2.08 408837 56 8294 394507 2.06 402801 57 8926 398485 2.19 407411 58 8394 395659 2.08 404053 59 8189 393360 2.04 401549 60 8287 391340 2.07 399627 61 8617 395714 2.13 404331 62 8085 391548 2.02 399633 63 8299 391481 2.08 399780 64 8191 391640 2.05 399831 65 8334 393090 2.08 401424 66 8484 392418 2.12 400902 67 8540 397790 2.10 406330 68 8514 391561 2.13 400075 69 8876 388493 2.23 397369 70 8395 394806 2.08 403201 71 8356 387156 2.11 395512 72 8463 386378 2.14 394841 73 8210 389308 2.07 397518 74 8260 384937 2.10 393197 75 8346 385690 2.12 394036 76 8218 385698 2.09 393916 77 8327 382802 2.13 391129 78 8229 380585 2.12 388814 79 8382 381549 2.15 389931 80 8451 378042 2.19 386493 81 8757 376828 2.27 385585 82 8385 377491 2.17 385876 83 8398 375073 2.19 383471 84 8608 374054 2.25 382662 85 8907 375454 2.32 384361 86 8753 370921 2.31 379674 87 8705 370253 2.30 378958 88 8688 371560 2.28 380248 89 8473 368192 2.25 376665 90 8634 367010 2.30 375644 91 8636 365205 2.31 373841 92 9003 362956 2.42 371959 93 9217 362519 2.48 371736 94 9329 367243 2.48 376572 95 9268 358374 2.52 367642 96 9500 354882 2.61 364382 97 9988 355671 2.73 365659 98 10148 347832 2.83 357980 99 9834 339625 2.81 349459 100 5343 276154 1.90 281497 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 257476 497082 34.12 754558 2 259216 637409 28.91 896625 3 203178 596824 25.40 800002 4 145070 697791 17.21 842861 5 87998 896200 8.94 984198 6 76591 1035036 6.89 1111627 7 72416 1203851 5.67 1276267 8 77906 1196360 6.11 1274266 9 60839 1113585 5.18 1174424 10 61319 1102489 5.27 1163808 11 66780 1083931 5.80 1150711 12 61528 1078124 5.40 1139652 13 60345 1125259 5.09 1185604 14 58626 1127563 4.94 1186189 15 62772 1120731 5.30 1183503 16 66543 1067978 5.87 1134521 17 57974 1086420 5.07 1144394 18 55817 1086012 4.89 1141829 19 59517 1116246 5.06 1175763 20 56818 1131964 4.78 1188782 21 55117 1086979 4.83 1142096 22 53797 1091153 4.70 1144950 23 55070 1100875 4.76 1155945 24 50547 1105441 4.37 1155988 25 51883 1126322 4.40 1178205 26 51003 1141587 4.28 1192590 27 49490 1133281 4.18 1182771 28 48490 1153668 4.03 1202158 29 49504 1159034 4.10 1208538 30 46895 1157696 3.89 1204591 31 48487 1168042 3.99 1216529 32 46584 1154727 3.88 1201311 33 46111 1171614 3.79 1217725 34 46418 1167530 3.82 1213948 35 46151 1176876 3.77 1223027 36 43757 1174435 3.59 1218192 37 44224 1178735 3.62 1222959 38 42620 1185806 3.47 1228426 39 42698 1173793 3.51 1216491 40 41647 1177113 3.42 1218760 41 42522 1221580 3.36 1264102 42 39485 1183646 3.23 1223131 43 41657 1187509 3.39 1229166 44 40881 1199668 3.30 1240549 45 39073 1207488 3.13 1246561 46 38422 1206281 3.09 1244703 47 38079 1214618 3.04 1252697 48 36943 1207838 2.97 1244781 49 36902 1212756 2.95 1249658 50 36831 1225712 2.92 1262543 51 35884 1224676 2.85 1260560 52 35700 1212682 2.86 1248382 53 36077 1219776 2.87 1255853 54 33974 1200221 2.75 1234195 55 34916 1199146 2.83 1234062 56 34832 1219306 2.78 1254138 57 34789 1212469 2.79 1247258 58 33884 1230110 2.68 1263994 59 34078 1237838 2.68 1271916 60 32954 1197993 2.68 1230947 61 33945 1189372 2.77 1223317 62 33446 1218298 2.67 1251744 63 32727 1179278 2.70 1212005 64 32383 1172192 2.69 1204575 65 32958 1180406 2.72 1213364 66 32039 1179104 2.65 1211143 67 32920 1190848 2.69 1223768 68 31993 1176068 2.65 1208061 69 33798 1183510 2.78 1217308 70 31520 1173183 2.62 1204703 71 32059 1164986 2.68 1197045 72 32233 1159647 2.70 1191880 73 31475 1167857 2.62 1199332 74 31940 1184782 2.63 1216722 75 31120 1159772 2.61 1190892 76 30963 1153293 2.61 1184256 77 31396 1161091 2.63 1192487 78 31281 1175262 2.59 1206543 79 31601 1165883 2.64 1197484 80 31030 1149266 2.63 1180296 81 32051 1144200 2.72 1176251 82 31277 1148482 2.65 1179759 83 31586 1131518 2.72 1163104 84 30795 1120230 2.68 1151025 85 32535 1112994 2.84 1145529 86 32007 1114303 2.79 1146310 87 31441 1112579 2.75 1144020 88 31826 1119243 2.76 1151069 89 32324 1118349 2.81 1150673 90 31446 1097390 2.79 1128836 91 31767 1091896 2.83 1123663 92 31978 1089237 2.85 1121215 93 32284 1079313 2.90 1111597 94 33143 1082929 2.97 1116072 95 34467 1084637 3.08 1119104 96 34770 1087408 3.10 1122178 97 36028 1078692 3.23 1114720 98 36275 1056987 3.32 1093262 99 31862 1031419 3.00 1063281 100 17762 861588 2.02 879350 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 138466 81688 62.90 220154 2 177954 93674 65.51 271628 3 178836 102735 63.51 281571 4 121162 96377 55.70 217539 5 104493 90421 53.61 194914 6 76345 64044 54.38 140389 7 81064 59722 57.58 140786 8 91585 59774 60.51 151359 9 95154 60259 61.23 155413 10 98021 55792 63.73 153813 11 112037 56163 66.61 168200 12 127189 57093 69.02 184282 13 120614 56282 68.18 176896 14 107795 53672 66.76 161467 15 107001 53709 66.58 160710 16 108024 53891 66.72 161915 17 113297 63515 64.08 176812 18 108276 52644 67.29 160920 19 104762 50551 67.45 155313 20 106230 50796 67.65 157026 21 106309 50628 67.74 156937 22 102164 48598 67.77 150762 23 101252 46558 68.50 147810 24 101454 47356 68.18 148810 25 101550 45565 69.03 147115 26 98438 44364 68.93 142802 27 96137 44794 68.22 140931 28 94634 42688 68.91 137322 29 92290 41432 69.02 133722 30 91967 41241 69.04 133208 31 90130 39952 69.29 130082 32 87310 39412 68.90 126722 33 86635 38092 69.46 124727 34 86255 37291 69.82 123546 35 85211 37734 69.31 122945 36 82589 36461 69.37 119050 37 80775 34931 69.81 115706 38 80024 35024 69.56 115048 39 78443 34299 69.58 112742 40 76034 32699 69.93 108733 41 76989 33056 69.96 110045 42 75576 32064 70.21 107640 43 74116 31051 70.47 105167 44 74518 31275 70.44 105793 45 71649 29881 70.57 101530 46 69155 28594 70.75 97749 47 67761 28285 70.55 96046 48 67329 28168 70.50 95497 49 66479 27673 70.61 94152 50 66493 27858 70.47 94351 51 62748 26309 70.46 89057 52 60323 25347 70.41 85670 53 59363 25140 70.25 84503 54 58727 24412 70.64 83139 55 57214 24372 70.13 81586 56 56481 24173 70.03 80654 57 56222 24010 70.07 80232 58 53397 22521 70.34 75918 59 52541 22046 70.44 74587 60 50732 21915 69.83 72647 61 49320 20432 70.71 69752 62 48609 20672 70.16 69281 63 47129 19942 70.27 67071 64 46264 19978 69.84 66242 65 46196 19545 70.27 65741 66 44820 19740 69.42 64560 67 45348 19772 69.64 65120 68 42450 18078 70.13 60528 69 40989 18123 69.34 59112 70 39818 17241 69.78 57059 71 39117 16875 69.86 55992 72 38183 16411 69.94 54594 73 37061 16431 69.28 53492 74 36400 15896 69.60 52296 75 35593 15698 69.39 51291 76 33538 15361 68.59 48899 77 33339 14724 69.37 48063 78 32110 14537 68.84 46647 79 31270 14142 68.86 45412 80 30564 14105 68.42 44669 81 29894 13919 68.23 43813 82 28652 13675 67.69 42327 83 28062 12948 68.43 41010 84 27184 12844 67.91 40028 85 26061 12266 68.00 38327 86 25001 11632 68.25 36633 87 24512 11428 68.20 35940 88 24172 11691 67.40 35863 89 23244 10961 67.95 34205 90 22755 10854 67.71 33609 91 22124 10345 68.14 32469 92 20852 10061 67.45 30913 93 20728 9989 67.48 30717 94 19778 9171 68.32 28949 95 18713 8791 68.04 27504 96 18010 8849 67.05 26859 97 17105 8105 67.85 25210 98 15005 7752 65.94 22757 99 11862 6950 63.06 18812 100 3330 4086 44.90 7416 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 113531 590737 16.12 704268 2 54677 205052 21.05 259729 3 56108 274147 16.99 330255 4 34213 334531 9.28 368744 5 21650 415876 4.95 437526 6 13929 457491 2.95 471420 7 13070 293975 4.26 307045 8 13270 275860 4.59 289130 9 12375 277328 4.27 289703 10 16497 273567 5.69 290064 11 26749 267861 9.08 294610 12 12751 274255 4.44 287006 13 12954 279702 4.43 292656 14 10480 277715 3.64 288195 15 12435 264352 4.49 276787 16 15632 263375 5.60 279007 17 10039 267009 3.62 277048 18 10864 278972 3.75 289836 19 9663 252386 3.69 262049 20 9199 251614 3.53 260813 21 8919 248069 3.47 256988 22 8423 246256 3.31 254679 23 8388 236784 3.42 245172 24 7720 232584 3.21 240304 25 7501 239463 3.04 246964 26 7468 232595 3.11 240063 27 7259 225227 3.12 232486 28 6959 226927 2.98 233886 29 6834 220176 3.01 227010 30 6392 215864 2.88 222256 31 6365 215232 2.87 221597 32 6016 206846 2.83 212862 33 5995 207737 2.80 213732 34 5740 205469 2.72 211209 35 5700 197154 2.81 202854 36 5371 195080 2.68 200451 37 5598 195565 2.78 201163 38 5055 188899 2.61 193954 39 5091 193188 2.57 198279 40 4683 181924 2.51 186607 41 4958 182749 2.64 187707 42 4553 178204 2.49 182757 43 4569 179146 2.49 183715 44 4272 169195 2.46 173467 45 4163 168602 2.41 172765 46 3871 163432 2.31 167303 47 3876 157639 2.40 161515 48 3883 156931 2.41 160814 49 3670 156444 2.29 160114 50 3476 152848 2.22 156324 51 3542 150247 2.30 153789 52 3408 146631 2.27 150039 53 3190 143556 2.17 146746 54 3234 138522 2.28 141756 55 3186 137847 2.26 141033 56 3098 133552 2.27 136650 57 3078 132097 2.28 135175 58 3014 126468 2.33 129482 59 2950 123206 2.34 126156 60 2813 120429 2.28 123242 61 2701 118994 2.22 121695 62 2705 115266 2.29 117971 63 2639 112716 2.29 115355 64 2655 109530 2.37 112185 65 2459 108135 2.22 110594 66 2562 106138 2.36 108700 67 2685 105916 2.47 108601 68 2417 100871 2.34 103288 69 2380 98950 2.35 101330 70 2240 97541 2.24 99781 71 2409 91675 2.56 94084 72 2238 90886 2.40 93124 73 2167 89342 2.37 91509 74 2146 86793 2.41 88939 75 2170 85628 2.47 87798 76 2116 82739 2.49 84855 77 1966 79859 2.40 81825 78 1985 78638 2.46 80623 79 1944 76432 2.48 78376 80 1996 74259 2.62 76255 81 1936 72102 2.61 74038 82 1792 69649 2.51 71441 83 1781 68139 2.55 69920 84 1729 66195 2.55 67924 85 1662 65359 2.48 67021 86 1542 62721 2.40 64263 87 1497 61189 2.39 62686 88 1629 60443 2.62 62072 89 1605 57902 2.70 59507 90 1549 56427 2.67 57976 91 1431 54474 2.56 55905 92 1522 53166 2.78 54688 93 1381 52261 2.57 53642 94 1452 52892 2.67 54344 95 1354 47958 2.75 49312 96 1237 45715 2.63 46952 97 1202 45029 2.60 46231 98 1121 42309 2.58 43430 99 1033 40584 2.48 41617 100 363 31119 1.15 31482 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 219910 507089 30.25 726999 2 222725 651806 25.47 874531 3 176317 603751 22.60 780068 4 131188 670554 16.36 801742 5 83756 836539 9.10 920295 6 72116 943301 7.10 1015417 7 65932 1071001 5.80 1136933 8 72995 1048056 6.51 1121051 9 53975 964831 5.30 1018806 10 53318 941844 5.36 995162 11 58883 901382 6.13 960265 12 54348 878792 5.82 933140 13 51118 905170 5.35 956288 14 49052 892644 5.21 941696 15 54155 875873 5.82 930028 16 59274 815490 6.78 874764 17 47335 819306 5.46 866641 18 45290 805098 5.33 850388 19 48103 817513 5.56 865616 20 45087 814394 5.25 859481 21 43171 766080 5.33 809251 22 40739 756245 5.11 796984 23 41099 749749 5.20 790848 24 37716 739702 4.85 777418 25 38237 738813 4.92 777050 26 36262 736369 4.69 772631 27 35510 716837 4.72 752347 28 34103 723401 4.50 757504 29 34100 708828 4.59 742928 30 32058 699574 4.38 731632 31 33065 692234 4.56 725299 32 31100 668486 4.45 699586 33 30435 665578 4.37 696013 34 28887 653546 4.23 682433 35 29613 643925 4.40 673538 36 26806 634290 4.05 661096 37 28082 621034 4.33 649116 38 25885 614042 4.04 639927 39 25509 597994 4.09 623503 40 24444 590077 3.98 614521 41 24924 604813 3.96 629737 42 22225 570122 3.75 592347 43 23202 559042 3.98 582244 44 21741 555628 3.77 577369 45 21041 548565 3.69 569606 46 20055 537425 3.60 557480 47 20017 531703 3.63 551720 48 18631 516974 3.48 535605 49 18544 509314 3.51 527858 50 17796 505338 3.40 523134 51 17494 496624 3.40 514118 52 16439 480190 3.31 496629 53 16417 473903 3.35 490320 54 15380 454915 3.27 470295 55 15421 442920 3.36 458341 56 14862 445241 3.23 460103 57 14388 433267 3.21 447655 58 14304 436863 3.17 451167 59 14167 430896 3.18 445063 60 12850 401069 3.10 413919 61 12685 391124 3.14 403809 62 12809 395179 3.14 407988 63 12152 367577 3.20 379729 64 11775 357477 3.19 369252 65 11584 354078 3.17 365662 66 10967 347443 3.06 358410 67 11903 345071 3.33 356974 68 10662 329453 3.13 340115 69 10768 329158 3.17 339926 70 10139 315453 3.11 325592 71 10553 302220 3.37 312773 72 9810 297180 3.20 306990 73 9614 294580 3.16 304194 74 9679 295598 3.17 305277 75 9091 278394 3.16 287485 76 8961 268794 3.23 277755 77 8890 267835 3.21 276725 78 8843 271538 3.15 280381 79 8545 261425 3.17 269970 80 8260 248351 3.22 256611 81 8117 241329 3.25 249446 82 7818 239074 3.17 246892 83 7636 225756 3.27 233392 84 7423 216332 3.32 223755 85 7082 210480 3.26 217562 86 6896 206111 3.24 213007 87 6769 200859 3.26 207628 88 6782 200081 3.28 206863 89 6837 193161 3.42 199998 90 6198 181452 3.30 187650 91 5980 176548 3.28 182528 92 6039 171191 3.41 177230 93 5541 165044 3.25 170585 94 5608 162387 3.34 167995 95 5448 159330 3.31 164778 96 5226 157506 3.21 162732 97 5235 153239 3.30 158474 98 4534 144370 3.04 148904 99 3670 137888 2.59 141558 100 1734 109963 1.55 111697