/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_7_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_7_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
29534746
Paired-end alignments with a unique best hit
10263536
Pairs without alignments under any condition
16560814
Pairs that did not map uniquely
2710396
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
369380706
Methylated C's in CpG context
32900574
Methylated C's in CHG context
2617073
Methylated C's in CHH context
9978987
Methylated C's in Unknown context
1167787
Unmethylated C's in CpG context
13974627
Unmethylated C's in CHG context
78100593
Unmethylated C's in CHH context
231808852
Unmethylated C's in Unknown context
4963777
Percentage methylation (CpG context)
70.2%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
4.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2605817
original top strand
CTOT
2517619
complementary to original top strand
CTOB
2532159
complementary to original bottom strand
OB
2607940
original bottom strand
Deduplication
Alignments analysed
10263535
Unique alignments
9955889
Duplicates removed
307646
Duplicated alignments were found at 262839 different positions
