zr2096_6_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7550283 lines in total Total number of methylation call strings processed: 15100566 Final Cytosine Methylation Report ================================= Total number of C's analysed: 190864683 Total methylated C's in CpG context: 17248355 Total methylated C's in CHG context: 1442731 Total methylated C's in CHH context: 6328119 Total C to T conversions in CpG context: 7336625 Total C to T conversions in CHG context: 39733116 Total C to T conversions in CHH context: 118775737 C methylated in CpG context: 70.2% C methylated in CHG context: 3.5% C methylated in CHH context: 5.1%