CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 120811 60982 66.46 181793 2 158280 73822 68.19 232102 3 154399 83623 64.87 238022 4 104145 88769 53.99 192914 5 96831 74015 56.68 170846 6 69738 54087 56.32 123825 7 78517 49577 61.30 128094 8 88308 51537 63.15 139845 9 95579 53005 64.33 148584 10 96241 49088 66.22 145329 11 110113 50053 68.75 160166 12 125206 51730 70.76 176936 13 117078 51205 69.57 168283 14 109465 50413 68.47 159878 15 111336 50936 68.61 162272 16 113008 51248 68.80 164256 17 124062 58399 67.99 182461 18 117035 52649 68.97 169684 19 116368 51362 69.38 167730 20 121812 52448 69.90 174260 21 124560 53961 69.77 178521 22 123182 52502 70.12 175684 23 123462 51743 70.47 175205 24 123910 52978 70.05 176888 25 125405 52044 70.67 177449 26 124180 51868 70.54 176048 27 125690 52655 70.48 178345 28 125840 51726 70.87 177566 29 126096 51499 71.00 177595 30 127444 51515 71.21 178959 31 128310 51105 71.52 179415 32 127284 51223 71.30 178507 33 128473 51242 71.49 179715 34 128850 50345 71.90 179195 35 131131 51382 71.85 182513 36 130095 52134 71.39 182229 37 130080 50589 72.00 180669 38 131536 50965 72.07 182501 39 131752 50650 72.23 182402 40 130918 50667 72.10 181585 41 134310 51569 72.26 185879 42 133917 51059 72.40 184976 43 134032 50545 72.62 184577 44 138219 51011 73.04 189230 45 136611 50467 73.02 187078 46 135161 49590 73.16 184751 47 136163 49559 73.32 185722 48 137383 50493 73.12 187876 49 138013 49612 73.56 187625 50 139647 50681 73.37 190328 51 136537 49894 73.24 186431 52 135509 49079 73.41 184588 53 136219 49139 73.49 185358 54 136859 49298 73.52 186157 55 135801 48771 73.58 184572 56 138232 49692 73.56 187924 57 138419 49616 73.61 188035 58 137158 48723 73.79 185881 59 136354 49067 73.54 185421 60 136644 49100 73.57 185744 61 133653 48428 73.40 182081 62 134075 48420 73.47 182495 63 135002 48221 73.68 183223 64 134877 48483 73.56 183360 65 136111 49029 73.52 185140 66 136452 49315 73.45 185767 67 137945 49762 73.49 187707 68 135394 49088 73.39 184482 69 133957 48996 73.22 182953 70 133342 48104 73.49 181446 71 133024 48380 73.33 181404 72 132593 47959 73.44 180552 73 131703 47255 73.59 178958 74 131890 47680 73.45 179570 75 131105 47681 73.33 178786 76 130244 47602 73.23 177846 77 130500 47229 73.43 177729 78 129984 47877 73.08 177861 79 128987 47692 73.01 176679 80 128907 48310 72.74 177217 81 129408 48073 72.91 177481 82 126885 48003 72.55 174888 83 126600 47857 72.57 174457 84 126343 48633 72.21 174976 85 124094 47294 72.41 171388 86 123911 47452 72.31 171363 87 123943 47459 72.31 171402 88 124101 47008 72.53 171109 89 122583 47149 72.22 169732 90 121683 47026 72.13 168709 91 120706 46933 72.00 167639 92 118669 46946 71.65 165615 93 118139 46677 71.68 164816 94 115321 46089 71.45 161410 95 114107 46387 71.10 160494 96 111923 47125 70.37 159048 97 109362 46390 70.22 155752 98 99952 44683 69.11 144635 99 80988 40995 66.39 121983 100 22277 25609 46.52 47886 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 100332 409161 19.69 509493 2 56683 144126 28.23 200809 3 55533 222626 19.96 278159 4 28065 276043 9.23 304108 5 15986 337120 4.53 353106 6 10927 377987 2.81 388914 7 10101 242999 3.99 253100 8 10847 239644 4.33 250491 9 10099 245288 3.95 255387 10 13950 244273 5.40 258223 11 20634 243466 7.81 264100 12 10669 256765 3.99 267434 13 10621 263246 3.88 273867 14 9100 263368 3.34 272468 15 10651 257428 3.97 268079 16 11966 262981 4.35 274947 17 9318 270233 3.33 279551 18 9574 289857 3.20 299431 19 9103 269083 3.27 278186 20 8692 272000 3.10 280692 21 8647 273373 3.07 282020 22 8382 276828 2.94 285210 23 8473 270191 3.04 278664 24 7798 270612 2.80 278410 25 8007 281362 2.77 289369 26 7783 280070 2.70 287853 27 7722 277361 2.71 285083 28 7580 286253 2.58 293833 29 7459 283826 2.56 291285 30 7228 283435 2.49 290663 31 7371 286931 2.50 294302 32 6983 283561 2.40 290544 33 7024 292599 2.34 299623 34 7176 291769 2.40 298945 35 6824 287848 2.32 294672 36 6935 287193 2.36 294128 37 6856 296936 2.26 303792 38 6484 292584 2.17 299068 39 6791 300987 2.21 307778 40 6621 292734 2.21 299355 41 6400 299746 2.09 306146 42 6232 298272 2.05 304504 43 6329 303342 2.04 309671 44 6423 295084 2.13 301507 45 6022 299590 1.97 305612 46 5878 299546 1.92 305424 47 5932 294285 1.98 300217 48 5890 298125 1.94 304015 49 5751 304657 1.85 310408 50 5666 301356 1.85 307022 51 5973 301941 1.94 307914 52 5931 302500 1.92 308431 53 5596 301147 1.82 306743 54 5662 296899 1.87 302561 55 5600 302386 1.82 307986 56 5428 298579 1.79 304007 57 5864 301784 1.91 307648 58 5386 297978 1.78 303364 59 5480 296476 1.81 301956 60 5346 295984 1.77 301330 61 5657 297816 1.86 303473 62 5459 295625 1.81 301084 63 5482 294417 1.83 299899 64 5284 294755 1.76 300039 65 5594 296083 1.85 301677 66 5577 294678 1.86 300255 67 5728 300071 1.87 305799 68 5422 292525 1.82 297947 69 5950 293067 1.99 299017 70 5429 294360 1.81 299789 71 5434 288791 1.85 294225 72 5602 289590 1.90 295192 73 5426 292364 1.82 297790 74 5497 288296 1.87 293793 75 5512 288270 1.88 293782 76 5447 288675 1.85 294122 77 5304 286012 1.82 291316 78 5423 284025 1.87 289448 79 5451 283888 1.88 289339 80 5427 282370 1.89 287797 81 5751 281393 2.00 287144 82 5404 280290 1.89 285694 83 5616 279172 1.97 284788 84 5481 277563 1.94 283044 85 5916 279854 2.07 285770 86 5668 274947 2.02 280615 87 5646 274502 2.02 280148 88 5631 274622 2.01 280253 89 5661 271488 2.04 277149 90 5844 270746 2.11 276590 91 5702 269382 2.07 275084 92 5862 267994 2.14 273856 93 5951 267526 2.18 273477 94 6162 271328 2.22 277490 95 6191 264224 2.29 270415 96 6564 262174 2.44 268738 97 6968 262386 2.59 269354 98 7065 256741 2.68 263806 99 7066 251798 2.73 258864 100 3566 205695 1.70 209261 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 233560 368654 38.78 602214 2 230123 481180 32.35 711303 3 176980 452656 28.11 629636 4 118865 534472 18.19 653337 5 72567 674294 9.72 746861 6 63293 775413 7.55 838706 7 61416 893493 6.43 954909 8 64177 899974 6.66 964151 9 52142 838422 5.85 890564 10 51805 826408 5.90 878213 11 57578 806991 6.66 864569 12 51810 806337 6.04 858147 13 51310 848266 5.70 899576 14 50230 850449 5.58 900679 15 54035 839647 6.05 893682 16 55575 803497 6.47 859072 17 50632 811125 5.88 861757 18 47959 812570 5.57 860529 19 51584 837283 5.80 888867 20 48658 848231 5.43 896889 21 48307 818145 5.58 866452 22 46123 819325 5.33 865448 23 48386 826977 5.53 875363 24 42976 831741 4.91 874717 25 45230 848369 5.06 893599 26 43762 859903 4.84 903665 27 42989 855708 4.78 898697 28 41378 873719 4.52 915097 29 42776 874669 4.66 917445 30 39832 876306 4.35 916138 31 41230 880537 4.47 921767 32 39208 870825 4.31 910033 33 38997 881145 4.24 920142 34 38509 881656 4.19 920165 35 38342 888341 4.14 926683 36 36119 887157 3.91 923276 37 37143 891097 4.00 928240 38 35231 893360 3.79 928591 39 35255 885992 3.83 921247 40 34204 886821 3.71 921025 41 34765 923176 3.63 957941 42 31730 891639 3.44 923369 43 33691 893936 3.63 927627 44 32605 903535 3.48 936140 45 31104 907497 3.31 938601 46 30525 906633 3.26 937158 47 30372 912046 3.22 942418 48 28531 904498 3.06 933029 49 28930 910054 3.08 938984 50 28493 918033 3.01 946526 51 28099 918532 2.97 946631 52 27354 908146 2.92 935500 53 27600 912563 2.94 940163 54 26030 897390 2.82 923420 55 26308 894997 2.86 921305 56 25894 910464 2.77 936358 57 25951 905191 2.79 931142 58 25088 918664 2.66 943752 59 25557 923066 2.69 948623 60 24379 889994 2.67 914373 61 24744 883209 2.73 907953 62 24454 907984 2.62 932438 63 24043 874421 2.68 898464 64 24073 870030 2.69 894103 65 23539 876416 2.62 899955 66 22759 873428 2.54 896187 67 23520 881228 2.60 904748 68 22841 869506 2.56 892347 69 24152 875840 2.68 899992 70 22399 867521 2.52 889920 71 22763 860623 2.58 883386 72 22288 856318 2.54 878606 73 22261 860398 2.52 882659 74 22034 874370 2.46 896404 75 21958 853782 2.51 875740 76 21761 846514 2.51 868275 77 21829 854159 2.49 875988 78 21944 865090 2.47 887034 79 21963 856578 2.50 878541 80 21733 843140 2.51 864873 81 22421 838585 2.60 861006 82 21449 842842 2.48 864291 83 21495 826054 2.54 847549 84 21057 818617 2.51 839674 85 22373 813857 2.68 836230 86 21929 815530 2.62 837459 87 21474 809863 2.58 831337 88 21881 814759 2.62 836640 89 22013 811260 2.64 833273 90 21471 795424 2.63 816895 91 21980 794325 2.69 816305 92 21981 790351 2.71 812332 93 22103 783077 2.75 805180 94 22910 784005 2.84 806915 95 23593 785046 2.92 808639 96 24248 786863 2.99 811111 97 24857 781593 3.08 806450 98 25234 765807 3.19 791041 99 22523 746314 2.93 768837 100 12232 632464 1.90 644696 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 108533 62751 63.36 171284 2 140618 71555 66.28 212173 3 139982 78583 64.05 218565 4 90885 77381 54.01 168266 5 82206 70056 53.99 152262 6 59787 48814 55.05 108601 7 63108 44479 58.66 107587 8 71734 45284 61.30 117018 9 75283 45561 62.30 120844 10 76480 41354 64.90 117834 11 86134 41321 67.58 127455 12 98661 42362 69.96 141023 13 94390 40991 69.72 135381 14 83102 39717 67.66 122819 15 81816 39244 67.58 121060 16 83046 39150 67.96 122196 17 92343 44951 67.26 137294 18 82510 38303 68.30 120813 19 79960 36388 68.72 116348 20 80845 36258 69.04 117103 21 81215 36801 68.82 118016 22 78541 35228 69.04 113769 23 76326 33370 69.58 109696 24 76076 34253 68.95 110329 25 76262 32837 69.90 109099 26 73333 31464 69.98 104797 27 72321 31828 69.44 104149 28 70814 30551 69.86 101365 29 69334 29818 69.93 99152 30 68454 29216 70.09 97670 31 67125 28312 70.33 95437 32 64174 27384 70.09 91558 33 63455 27134 70.05 90589 34 62604 26116 70.56 88720 35 62015 26222 70.28 88237 36 59955 25829 69.89 85784 37 57948 24724 70.09 82672 38 58938 24239 70.86 83177 39 56348 23668 70.42 80016 40 54392 22536 70.71 76928 41 55925 22769 71.07 78694 42 54296 22405 70.79 76701 43 52962 21394 71.23 74356 44 53403 21709 71.10 75112 45 51290 20817 71.13 72107 46 48695 19544 71.36 68239 47 48330 19089 71.69 67419 48 47938 19035 71.58 66973 49 47429 18769 71.65 66198 50 47293 18659 71.71 65952 51 44218 18006 71.06 62224 52 41975 17188 70.95 59163 53 41571 16688 71.36 58259 54 40915 16639 71.09 57554 55 40215 16063 71.46 56278 56 39549 15857 71.38 55406 57 39630 15924 71.34 55554 58 37252 15004 71.29 52256 59 36164 14586 71.26 50750 60 35092 14276 71.08 49368 61 33821 13444 71.56 47265 62 32909 13195 71.38 46104 63 31686 12965 70.96 44651 64 31489 12674 71.30 44163 65 30760 12676 70.82 43436 66 30315 12760 70.38 43075 67 30910 12679 70.91 43589 68 28495 11535 71.18 40030 69 27106 11484 70.24 38590 70 26789 10907 71.07 37696 71 25322 10733 70.23 36055 72 25349 10724 70.27 36073 73 24765 10014 71.21 34779 74 23799 9971 70.47 33770 75 23072 9734 70.33 32806 76 22376 9578 70.03 31954 77 21533 9004 70.51 30537 78 20677 8920 69.86 29597 79 20442 8438 70.78 28880 80 19683 8388 70.12 28071 81 19320 8196 70.21 27516 82 18357 8082 69.43 26439 83 17996 7918 69.45 25914 84 17274 7664 69.27 24938 85 16411 7043 69.97 23454 86 15631 6963 69.18 22594 87 15261 6686 69.54 21947 88 15105 6708 69.25 21813 89 14369 6202 69.85 20571 90 13901 6195 69.17 20096 91 13338 5714 70.01 19052 92 12744 5731 68.98 18475 93 12512 5662 68.85 18174 94 11624 5120 69.42 16744 95 11201 4845 69.81 16046 96 10633 4834 68.75 15467 97 9983 4531 68.78 14514 98 8864 4281 67.43 13145 99 6860 3662 65.20 10522 100 2020 2306 46.69 4326 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 88124 451579 16.33 539703 2 40699 150011 21.34 190710 3 42454 202264 17.35 244718 4 22816 253401 8.26 276217 5 15210 316748 4.58 331958 6 9445 344241 2.67 353686 7 8657 218787 3.81 227444 8 8834 206388 4.10 215222 9 8258 208412 3.81 216670 10 11382 201986 5.33 213368 11 18756 197306 8.68 216062 12 8392 204207 3.95 212599 13 8587 206918 3.98 215505 14 6959 204316 3.29 211275 15 8332 192865 4.14 201197 16 9997 191705 4.96 201702 17 7025 194692 3.48 201717 18 7244 208456 3.36 215700 19 6402 183047 3.38 189449 20 5976 181043 3.20 187019 21 6022 179274 3.25 185296 22 5513 177422 3.01 182935 23 5611 171256 3.17 176867 24 5137 166208 3.00 171345 25 5048 170210 2.88 175258 26 4945 165530 2.90 170475 27 4801 159718 2.92 164519 28 4637 161071 2.80 165708 29 4522 156318 2.81 160840 30 4304 152864 2.74 157168 31 4274 151791 2.74 156065 32 3951 145905 2.64 149856 33 3917 147218 2.59 151135 34 3680 144500 2.48 148180 35 3854 138156 2.71 142010 36 3546 134986 2.56 138532 37 3707 137258 2.63 140965 38 3384 131827 2.50 135211 39 3439 134690 2.49 138129 40 3142 125753 2.44 128895 41 3251 127382 2.49 130633 42 2944 123319 2.33 126263 43 3065 123701 2.42 126766 44 2815 115874 2.37 118689 45 2676 115341 2.27 118017 46 2602 111790 2.27 114392 47 2594 107003 2.37 109597 48 2562 106972 2.34 109534 49 2418 106830 2.21 109248 50 2295 103271 2.17 105566 51 2311 102112 2.21 104423 52 2276 100026 2.22 102302 53 2181 96438 2.21 98619 54 2129 93093 2.24 95222 55 2147 92441 2.27 94588 56 1967 89341 2.15 91308 57 1996 88463 2.21 90459 58 1798 84003 2.10 85801 59 1810 81413 2.17 83223 60 1775 79301 2.19 81076 61 1786 78426 2.23 80212 62 1670 76020 2.15 77690 63 1663 74199 2.19 75862 64 1661 71366 2.27 73027 65 1654 70307 2.30 71961 66 1745 68553 2.48 70298 67 1697 69123 2.40 70820 68 1608 65657 2.39 67265 69 1621 63374 2.49 64995 70 1458 62002 2.30 63460 71 1526 58751 2.53 60277 72 1439 57702 2.43 59141 73 1432 56818 2.46 58250 74 1389 54522 2.48 55911 75 1418 53790 2.57 55208 76 1379 52215 2.57 53594 77 1267 50424 2.45 51691 78 1335 48547 2.68 49882 79 1213 46684 2.53 47897 80 1299 46009 2.75 47308 81 1164 43717 2.59 44881 82 1130 42181 2.61 43311 83 1160 41454 2.72 42614 84 1087 39582 2.67 40669 85 1062 38830 2.66 39892 86 1029 37486 2.67 38515 87 1004 36288 2.69 37292 88 1008 35508 2.76 36516 89 996 33881 2.86 34877 90 991 32623 2.95 33614 91 932 31855 2.84 32787 92 951 30877 2.99 31828 93 851 30142 2.75 30993 94 885 30538 2.82 31423 95 855 27436 3.02 28291 96 771 25856 2.90 26627 97 765 25126 2.95 25891 98 738 23502 3.04 24240 99 655 22529 2.83 23184 100 238 17448 1.35 17686 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 174826 371600 31.99 546426 2 171572 493786 25.79 665358 3 137224 454004 23.21 591228 4 94946 503844 15.86 598790 5 63056 626022 9.15 689078 6 54974 706899 7.22 761873 7 51597 804531 6.03 856128 8 55001 794362 6.48 849363 9 42076 723824 5.49 765900 10 41654 703102 5.59 744756 11 47009 667954 6.58 714963 12 42201 649026 6.11 691227 13 41352 673290 5.79 714642 14 39530 661231 5.64 700761 15 43626 643340 6.35 686966 16 46012 594307 7.19 640319 17 39644 593732 6.26 633376 18 36760 586072 5.90 622832 19 40698 599874 6.35 640572 20 36700 594771 5.81 631471 21 36256 552827 6.15 589083 22 33873 544035 5.86 577908 23 35047 534359 6.16 569406 24 31448 529276 5.61 560724 25 32842 530048 5.83 562890 26 30373 527946 5.44 558319 27 30656 511637 5.65 542293 28 28935 517136 5.30 546071 29 29840 503350 5.60 533190 30 27470 497055 5.24 524525 31 28516 495035 5.45 523551 32 26503 473281 5.30 499784 33 26106 471170 5.25 497276 34 24327 461137 5.01 485464 35 25264 453872 5.27 479136 36 22786 445352 4.87 468138 37 23924 436201 5.20 460125 38 21935 428290 4.87 450225 39 22310 416925 5.08 439235 40 20458 411586 4.74 432044 41 21239 427553 4.73 448792 42 18645 397007 4.49 415652 43 19887 387826 4.88 407713 44 18394 382527 4.59 400921 45 17706 377302 4.48 395008 46 16709 370506 4.32 387215 47 16586 363818 4.36 380404 48 15344 352131 4.18 367475 49 15230 347517 4.20 362747 50 14776 344717 4.11 359493 51 14446 339258 4.08 353704 52 13681 323958 4.05 337639 53 13324 320695 3.99 334019 54 12481 305854 3.92 318335 55 12446 296884 4.02 309330 56 11876 297976 3.83 309852 57 11550 289946 3.83 301496 58 11516 294993 3.76 306509 59 11296 289004 3.76 300300 60 10215 264018 3.72 274233 61 10057 255732 3.78 265789 62 9894 262816 3.63 272710 63 9706 239808 3.89 249514 64 9217 231999 3.82 241216 65 9026 228958 3.79 237984 66 8413 225504 3.60 233917 67 8989 224858 3.84 233847 68 8241 208635 3.80 216876 69 8227 212946 3.72 221173 70 7713 200956 3.70 208669 71 8080 190961 4.06 199041 72 7310 187617 3.75 194927 73 7389 185878 3.82 193267 74 7175 186960 3.70 194135 75 6872 172778 3.83 179650 76 6610 165974 3.83 172584 77 6524 165817 3.79 172341 78 6389 171325 3.60 177714 79 6403 162253 3.80 168656 80 5962 152123 3.77 158085 81 5972 146940 3.91 152912 82 5768 145901 3.80 151669 83 5611 134732 4.00 140343 84 5304 128601 3.96 133905 85 5031 124636 3.88 129667 86 4776 121920 3.77 126696 87 4659 117731 3.81 122390 88 4772 116944 3.92 121716 89 4727 112358 4.04 117085 90 4334 103231 4.03 107565 91 4199 100020 4.03 104219 92 4075 95957 4.07 100032 93 3920 92224 4.08 96144 94 3659 90359 3.89 94018 95 3619 87809 3.96 91428 96 3502 87128 3.86 90630 97 3359 84520 3.82 87879 98 3014 78637 3.69 81651 99 2388 75207 3.08 77595 100 975 59005 1.63 59980