/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_6_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_6_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
24237290
Paired-end alignments with a unique best hit
7735314
Pairs without alignments under any condition
14340992
Pairs that did not map uniquely
2160984
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
275523644
Methylated C's in CpG context
25657852
Methylated C's in CHG context
1838651
Methylated C's in CHH context
7806415
Methylated C's in Unknown context
911519
Unmethylated C's in CpG context
10345208
Unmethylated C's in CHG context
58273355
Unmethylated C's in CHH context
171602163
Unmethylated C's in Unknown context
3902421
Percentage methylation (CpG context)
71.3%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
4.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2038524
original top strand
CTOT
1822720
complementary to original top strand
CTOB
1834457
complementary to original bottom strand
OB
2039611
original bottom strand
Deduplication
Alignments analysed
7735312
Unique alignments
7550283
Duplicates removed
185029
Duplicated alignments were found at 153083 different positions
