zr2096_5_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9873285 lines in total Total number of methylation call strings processed: 19746570 Final Cytosine Methylation Report ================================= Total number of C's analysed: 252492402 Total methylated C's in CpG context: 20157186 Total methylated C's in CHG context: 1871699 Total methylated C's in CHH context: 7828745 Total C to T conversions in CpG context: 11121885 Total C to T conversions in CHG context: 51406712 Total C to T conversions in CHH context: 160106175 C methylated in CpG context: 64.4% C methylated in CHG context: 3.5% C methylated in CHH context: 4.7%