CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 156940 82425 65.57 239365 2 200074 106965 65.16 307039 3 198367 118941 62.52 317308 4 132093 107998 55.02 240091 5 111443 108414 50.69 219857 6 79605 77144 50.79 156749 7 88296 73050 54.72 161346 8 99039 75671 56.69 174710 9 105695 77213 57.79 182908 10 109368 71785 60.37 181153 11 124009 75058 62.30 199067 12 137646 77833 63.88 215479 13 133612 76406 63.62 210018 14 126445 74244 63.01 200689 15 129222 75701 63.06 204923 16 130665 77213 62.86 207878 17 141988 90991 60.94 232979 18 135866 78145 63.49 214011 19 134275 76268 63.78 210543 20 139536 77744 64.22 217280 21 141795 79573 64.05 221368 22 139680 77002 64.46 216682 23 141493 76432 64.93 217925 24 143278 78825 64.51 222103 25 146765 77661 65.40 224426 26 145005 76885 65.35 221890 27 146058 79140 64.86 225198 28 145141 76807 65.39 221948 29 145830 77059 65.43 222889 30 146167 76591 65.62 222758 31 147522 76246 65.93 223768 32 147596 76362 65.90 223958 33 149337 76661 66.08 225998 34 149749 76157 66.29 225906 35 151344 77608 66.10 228952 36 150353 77422 66.01 227775 37 149458 76031 66.28 225489 38 151949 77437 66.24 229386 39 151789 76880 66.38 228669 40 151261 75939 66.58 227200 41 155572 78238 66.54 233810 42 155090 77110 66.79 232200 43 155408 75652 67.26 231060 44 159729 77108 67.44 236837 45 158422 77073 67.27 235495 46 156779 75904 67.38 232683 47 157704 75694 67.57 233398 48 159466 77282 67.36 236748 49 160324 77198 67.50 237522 50 162881 78092 67.59 240973 51 157798 76530 67.34 234328 52 155974 75781 67.30 231755 53 157924 76088 67.49 234012 54 158127 76465 67.41 234592 55 157567 76102 67.43 233669 56 158403 77118 67.26 235521 57 159793 77600 67.31 237393 58 157684 75693 67.57 233377 59 158430 76258 67.51 234688 60 156906 75614 67.48 232520 61 155148 74557 67.54 229705 62 156184 74363 67.74 230547 63 156935 75388 67.55 232323 64 157036 75731 67.46 232767 65 157733 75532 67.62 233265 66 158573 76862 67.35 235435 67 159981 78018 67.22 237999 68 157225 75144 67.66 232369 69 155425 76036 67.15 231461 70 155132 74862 67.45 229994 71 155596 74779 67.54 230375 72 154869 75124 67.34 229993 73 153449 74777 67.24 228226 74 154256 74775 67.35 229031 75 153212 74324 67.34 227536 76 152320 74564 67.14 226884 77 153307 74398 67.33 227705 78 152911 74219 67.32 227130 79 150687 73663 67.17 224350 80 151704 75154 66.87 226858 81 150881 74727 66.88 225608 82 149368 74642 66.68 224010 83 149055 74732 66.61 223787 84 148632 74927 66.48 223559 85 145660 73556 66.45 219216 86 145482 73367 66.48 218849 87 144655 73492 66.31 218147 88 145710 74333 66.22 220043 89 143507 73245 66.21 216752 90 143135 72911 66.25 216046 91 141939 72695 66.13 214634 92 139977 72738 65.80 212715 93 139241 73440 65.47 212681 94 135753 71548 65.49 207301 95 133818 71643 65.13 205461 96 132765 72348 64.73 205113 97 128473 71122 64.37 199595 98 117237 67774 63.37 185011 99 95982 62172 60.69 158154 100 26072 37505 41.01 63577 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 121190 556969 17.87 678159 2 62681 195369 24.29 258050 3 57993 293395 16.50 351388 4 36000 356779 9.17 392779 5 18386 441200 4.00 459586 6 14695 495521 2.88 510216 7 13523 320473 4.05 333996 8 13798 306565 4.31 320363 9 13502 313289 4.13 326791 10 16510 316139 4.96 332649 11 21217 317928 6.26 339145 12 13922 335534 3.98 349456 13 13970 338496 3.96 352466 14 12593 334983 3.62 347576 15 14399 334475 4.13 348874 16 15069 340861 4.23 355930 17 12720 345259 3.55 357979 18 12850 369088 3.36 381938 19 12628 343655 3.54 356283 20 12265 345005 3.43 357270 21 12181 345993 3.40 358174 22 11569 350273 3.20 361842 23 11753 342874 3.31 354627 24 11281 344811 3.17 356092 25 11318 358936 3.06 370254 26 11110 358220 3.01 369330 27 10989 353152 3.02 364141 28 10550 361575 2.84 372125 29 10547 360550 2.84 371097 30 10126 360814 2.73 370940 31 9878 367145 2.62 377023 32 9617 357794 2.62 367411 33 9971 367846 2.64 377817 34 9979 371194 2.62 381173 35 9537 366003 2.54 375540 36 9453 367684 2.51 377137 37 9453 376432 2.45 385885 38 9146 372526 2.40 381672 39 9431 384457 2.39 393888 40 9053 374411 2.36 383464 41 8812 382136 2.25 390948 42 8743 382186 2.24 390929 43 9194 387605 2.32 396799 44 8842 376129 2.30 384971 45 8476 380504 2.18 388980 46 8306 382016 2.13 390322 47 8287 375204 2.16 383491 48 8366 380438 2.15 388804 49 8236 388917 2.07 397153 50 8050 385379 2.05 393429 51 8332 386071 2.11 394403 52 8014 386518 2.03 394532 53 7900 385205 2.01 393105 54 7977 379123 2.06 387100 55 8139 388245 2.05 396384 56 7881 383187 2.02 391068 57 8156 387728 2.06 395884 58 7898 382693 2.02 390591 59 7909 379784 2.04 387693 60 8021 378858 2.07 386879 61 8173 383099 2.09 391272 62 7542 379995 1.95 387537 63 7710 379066 1.99 386776 64 7688 380155 1.98 387843 65 7857 379544 2.03 387401 66 7877 379219 2.03 387096 67 8075 387131 2.04 395206 68 7749 377717 2.01 385466 69 8489 376109 2.21 384598 70 7899 380449 2.03 388348 71 7716 372829 2.03 380545 72 8183 371990 2.15 380173 73 7771 376763 2.02 384534 74 7817 372034 2.06 379851 75 7820 371450 2.06 379270 76 7839 371650 2.07 379489 77 7786 368047 2.07 375833 78 7894 366419 2.11 374313 79 7762 366889 2.07 374651 80 8103 365154 2.17 373257 81 8585 362143 2.32 370728 82 7935 362616 2.14 370551 83 8085 359811 2.20 367896 84 8049 358221 2.20 366270 85 8469 361267 2.29 369736 86 8093 356984 2.22 365077 87 8042 355817 2.21 363859 88 8332 356233 2.29 364565 89 8092 352919 2.24 361011 90 8282 350985 2.31 359267 91 8331 349929 2.33 358260 92 8312 349108 2.33 357420 93 8630 349531 2.41 358161 94 8948 355861 2.45 364809 95 9038 343171 2.57 352209 96 9333 342366 2.65 351699 97 9709 341531 2.76 351240 98 9925 333851 2.89 343776 99 9732 327889 2.88 337621 100 5225 268178 1.91 273403 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 272228 496622 35.41 768850 2 274338 637137 30.10 911475 3 210618 607449 25.75 818067 4 155944 699932 18.22 855876 5 85291 917349 8.51 1002640 6 73329 1052469 6.51 1125798 7 75641 1211909 5.87 1287550 8 75447 1212803 5.86 1288250 9 66675 1114336 5.65 1181011 10 66505 1115028 5.63 1181533 11 70855 1099573 6.05 1170428 12 64371 1089626 5.58 1153997 13 64966 1145950 5.37 1210916 14 64131 1144588 5.31 1208719 15 66081 1129773 5.53 1195854 16 66360 1071165 5.83 1137525 17 62780 1088981 5.45 1151761 18 58662 1089573 5.11 1148235 19 63126 1126411 5.31 1189537 20 59522 1139251 4.97 1198773 21 58277 1086009 5.09 1144286 22 55964 1088445 4.89 1144409 23 58386 1091241 5.08 1149627 24 53749 1095463 4.68 1149212 25 54964 1117294 4.69 1172258 26 53581 1132175 4.52 1185756 27 51739 1122600 4.41 1174339 28 50683 1146831 4.23 1197514 29 51640 1154497 4.28 1206137 30 48409 1155892 4.02 1204301 31 50197 1168703 4.12 1218900 32 48050 1149225 4.01 1197275 33 47503 1169122 3.90 1216625 34 47513 1166877 3.91 1214390 35 47428 1174310 3.88 1221738 36 45249 1172640 3.72 1217889 37 45293 1176321 3.71 1221614 38 43211 1182600 3.53 1225811 39 43476 1173343 3.57 1216819 40 42386 1177818 3.47 1220204 41 43114 1228428 3.39 1271542 42 40591 1185661 3.31 1226252 43 42405 1186741 3.45 1229146 44 41147 1200275 3.31 1241422 45 39314 1207174 3.15 1246488 46 38262 1206767 3.07 1245029 47 38392 1217351 3.06 1255743 48 36409 1206671 2.93 1243080 49 36788 1215294 2.94 1252082 50 36149 1229819 2.86 1265968 51 35795 1228436 2.83 1264231 52 34908 1213837 2.80 1248745 53 35128 1225063 2.79 1260191 54 33633 1202355 2.72 1235988 55 33786 1197077 2.74 1230863 56 33764 1222036 2.69 1255800 57 33547 1216753 2.68 1250300 58 33512 1235113 2.64 1268625 59 33919 1246524 2.65 1280443 60 31917 1197581 2.60 1229498 61 33498 1191999 2.73 1225497 62 32233 1223481 2.57 1255714 63 31367 1174023 2.60 1205390 64 31454 1166589 2.63 1198043 65 31446 1178850 2.60 1210296 66 30908 1176015 2.56 1206923 67 31549 1189546 2.58 1221095 68 30681 1168674 2.56 1199355 69 32385 1180992 2.67 1213377 70 30443 1165530 2.55 1195973 71 30881 1155839 2.60 1186720 72 30616 1151041 2.59 1181657 73 30451 1160634 2.56 1191085 74 30532 1181324 2.52 1211856 75 30000 1152680 2.54 1182680 76 29870 1139701 2.55 1169571 77 29953 1154014 2.53 1183967 78 30026 1173188 2.50 1203214 79 30593 1161380 2.57 1191973 80 30041 1140493 2.57 1170534 81 31065 1134364 2.67 1165429 82 30249 1140561 2.58 1170810 83 30016 1117704 2.62 1147720 84 29437 1105924 2.59 1135361 85 31147 1098086 2.76 1129233 86 30432 1103363 2.68 1133795 87 30651 1098310 2.71 1128961 88 30851 1109190 2.71 1140041 89 31426 1104192 2.77 1135618 90 30763 1080867 2.77 1111630 91 30900 1075994 2.79 1106894 92 31072 1072192 2.82 1103264 93 31399 1062870 2.87 1094269 94 32387 1064227 2.95 1096614 95 33412 1070192 3.03 1103604 96 33656 1074228 3.04 1107884 97 35573 1065397 3.23 1100970 98 35956 1041432 3.34 1077388 99 31980 1016875 3.05 1048855 100 18157 858724 2.07 876881 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 137384 85630 61.60 223014 2 172753 102840 62.68 275593 3 175304 112025 61.01 287329 4 114115 96741 54.12 210856 5 95716 102251 48.35 197967 6 69958 70513 49.80 140471 7 73984 65224 53.15 139208 8 84081 66643 55.78 150724 9 85782 66521 56.32 152303 10 88319 61485 58.96 149804 11 97925 62613 61.00 160538 12 108299 64044 62.84 172343 13 105176 62312 62.80 167488 14 96763 58736 62.23 155499 15 96243 58819 62.07 155062 16 96834 58953 62.16 155787 17 104567 70784 59.63 175351 18 96185 56844 62.85 153029 19 93260 54479 63.12 147739 20 94157 54666 63.27 148823 21 94836 54812 63.37 149648 22 90247 52617 63.17 142864 23 89118 50117 64.01 139235 24 89239 50831 63.71 140070 25 90306 49995 64.37 140301 26 86461 48084 64.26 134545 27 84846 48839 63.47 133685 28 82331 45856 64.23 128187 29 80763 45069 64.18 125832 30 79460 43972 64.38 123432 31 77043 42810 64.28 119853 32 75534 41998 64.27 117532 33 74863 41294 64.45 116157 34 74018 40057 64.89 114075 35 73293 40633 64.33 113926 36 70579 39594 64.06 110173 37 68747 37866 64.48 106613 38 68320 37347 64.66 105667 39 66568 37302 64.09 103870 40 64338 35502 64.44 99840 41 66013 35969 64.73 101982 42 64087 34688 64.88 98775 43 62376 33620 64.98 95996 44 63314 33639 65.30 96953 45 60530 32362 65.16 92892 46 58246 30877 65.35 89123 47 57087 30355 65.29 87442 48 56237 30355 64.94 86592 49 55923 29818 65.22 85741 50 56158 30153 65.06 86311 51 52238 28360 64.81 80598 52 49833 26986 64.87 76819 53 48994 26631 64.79 75625 54 48620 26335 64.87 74955 55 47114 25581 64.81 72695 56 46457 25811 64.28 72268 57 45762 25648 64.08 71410 58 44032 23963 64.76 67995 59 42888 23395 64.70 66283 60 41296 22391 64.84 63687 61 39588 21549 64.75 61137 62 38715 21332 64.47 60047 63 38027 20865 64.57 58892 64 36756 20524 64.17 57280 65 36534 20577 63.97 57111 66 36409 20348 64.15 56757 67 35974 20240 63.99 56214 68 33536 18822 64.05 52358 69 32412 18667 63.45 51079 70 31376 17706 63.93 49082 71 30847 17221 64.17 48068 72 30005 16998 63.84 47003 73 28708 16834 63.04 45542 74 28871 16610 63.48 45481 75 27718 16097 63.26 43815 76 26829 15942 62.73 42771 77 25817 15020 63.22 40837 78 25046 14679 63.05 39725 79 24198 14267 62.91 38465 80 23572 14201 62.40 37773 81 23166 13865 62.56 37031 82 22045 13512 62.00 35557 83 21326 13256 61.67 34582 84 20467 12671 61.76 33138 85 19676 11847 62.42 31523 86 18398 11609 61.31 30007 87 18468 11423 61.78 29891 88 17938 11289 61.37 29227 89 17376 10614 62.08 27990 90 16545 10328 61.57 26873 91 16182 9913 62.01 26095 92 15384 9531 61.75 24915 93 15209 9639 61.21 24848 94 14012 8737 61.59 22749 95 13663 8429 61.85 22092 96 13102 8262 61.33 21364 97 12243 7672 61.48 19915 98 10553 7143 59.63 17696 99 8415 6541 56.27 14956 100 2400 3736 39.11 6136 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 109074 601007 15.36 710081 2 47345 202157 18.98 249502 3 44903 263300 14.57 308203 4 29755 328168 8.31 357923 5 16062 409437 3.77 425499 6 12517 449222 2.71 461739 7 11520 288979 3.83 300499 8 10993 267264 3.95 278257 9 10967 270521 3.90 281488 10 12809 264021 4.63 276830 11 17492 257891 6.35 275383 12 10800 267097 3.89 277897 13 10589 267629 3.81 278218 14 9692 260228 3.59 269920 15 10618 253211 4.02 263829 16 11589 250859 4.42 262448 17 9205 251314 3.53 260519 18 9229 266223 3.35 275452 19 8709 239555 3.51 248264 20 8260 235712 3.39 243972 21 8158 230454 3.42 238612 22 7677 227749 3.26 235426 23 7563 219943 3.32 227506 24 7057 214226 3.19 221283 25 7127 220976 3.12 228103 26 6871 215379 3.09 222250 27 6755 206237 3.17 212992 28 6217 207347 2.91 213564 29 6093 203760 2.90 209853 30 5786 198819 2.83 204605 31 5945 197767 2.92 203712 32 5432 188620 2.80 194052 33 5439 190381 2.78 195820 34 5090 187221 2.65 192311 35 5014 179986 2.71 185000 36 4844 176092 2.68 180936 37 5006 177956 2.74 182962 38 4579 172017 2.59 176596 39 4658 176537 2.57 181195 40 4199 164301 2.49 168500 41 4358 165115 2.57 169473 42 3967 161869 2.39 165836 43 4171 162586 2.50 166757 44 3766 151258 2.43 155024 45 3725 151187 2.40 154912 46 3537 146938 2.35 150475 47 3432 140371 2.39 143803 48 3430 140501 2.38 143931 49 3289 139523 2.30 142812 50 3132 136014 2.25 139146 51 3201 134623 2.32 137824 52 3091 131411 2.30 134502 53 2931 127292 2.25 130223 54 2812 122855 2.24 125667 55 2835 121772 2.28 124607 56 2748 118162 2.27 120910 57 2773 118565 2.29 121338 58 2532 110038 2.25 112570 59 2578 107429 2.34 110007 60 2434 104554 2.28 106988 61 2477 104242 2.32 106719 62 2406 100741 2.33 103147 63 2360 98210 2.35 100570 64 2219 95428 2.27 97647 65 2255 93540 2.35 95795 66 2231 91386 2.38 93617 67 2493 92155 2.63 94648 68 2217 87128 2.48 89345 69 2097 84850 2.41 86947 70 1950 83173 2.29 85123 71 1989 78684 2.47 80673 72 1977 77365 2.49 79342 73 1921 76563 2.45 78484 74 1907 73759 2.52 75666 75 1915 73018 2.56 74933 76 1799 70075 2.50 71874 77 1812 67115 2.63 68927 78 1730 65686 2.57 67416 79 1661 62902 2.57 64563 80 1698 61479 2.69 63177 81 1655 58789 2.74 60444 82 1498 57283 2.55 58781 83 1565 55449 2.74 57014 84 1476 54352 2.64 55828 85 1444 52701 2.67 54145 86 1454 50585 2.79 52039 87 1370 49415 2.70 50785 88 1384 49208 2.74 50592 89 1331 46118 2.81 47449 90 1201 44659 2.62 45860 91 1248 42766 2.84 44014 92 1321 42310 3.03 43631 93 1244 41480 2.91 42724 94 1233 42371 2.83 43604 95 1143 37233 2.98 38376 96 1087 36152 2.92 37239 97 1029 34242 2.92 35271 98 991 32307 2.98 33298 99 896 30461 2.86 31357 100 346 23987 1.42 24333 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 206770 496989 29.38 703759 2 208945 648224 24.38 857169 3 165646 607365 21.43 773011 4 125179 668034 15.78 793213 5 70806 852735 7.67 923541 6 61166 954958 6.02 1016124 7 62807 1079673 5.50 1142480 8 61878 1065041 5.49 1126919 9 53158 960183 5.25 1013341 10 52871 949914 5.27 1002785 11 56810 912347 5.86 969157 12 50815 883669 5.44 934484 13 51594 915840 5.33 967434 14 49580 897249 5.24 946829 15 50984 869963 5.54 920947 16 51359 805975 5.99 857334 17 47266 804021 5.55 851287 18 43456 797039 5.17 840495 19 47015 814461 5.46 861476 20 43231 804533 5.10 847764 21 41848 744701 5.32 786549 22 39770 731608 5.16 771378 23 40393 718105 5.33 758498 24 36381 708351 4.89 744732 25 38217 709946 5.11 748163 26 35814 707641 4.82 743455 27 35043 684420 4.87 719463 28 33701 692321 4.64 726022 29 33717 678564 4.73 712281 30 31369 667613 4.49 698982 31 32405 668022 4.63 700427 32 30011 637671 4.49 667682 33 29509 635224 4.44 664733 34 28339 623104 4.35 651443 35 28534 614077 4.44 642611 36 26161 601054 4.17 627215 37 27155 588991 4.41 616146 38 25365 580094 4.19 605459 39 24914 563956 4.23 588870 40 23633 557073 4.07 580706 41 24719 577041 4.11 601760 42 21787 538188 3.89 559975 43 22794 526664 4.15 549458 44 21161 520217 3.91 541378 45 20391 513055 3.82 533446 46 19693 503014 3.77 522707 47 19307 496101 3.75 515408 48 18469 483747 3.68 502216 49 17943 475984 3.63 493927 50 17431 473248 3.55 490679 51 16985 464638 3.53 481623 52 15881 446235 3.44 462116 53 15702 441064 3.44 456766 54 15012 420476 3.45 435488 55 14713 408069 3.48 422782 56 14476 411854 3.40 426330 57 13738 402078 3.30 415816 58 14163 408787 3.35 422950 59 13647 402781 3.28 416428 60 12514 366401 3.30 378915 61 12458 356881 3.37 369339 62 12275 367344 3.23 379619 63 11686 333266 3.39 344952 64 11182 320730 3.37 331912 65 11117 319610 3.36 330727 66 10656 314269 3.28 324925 67 11353 314632 3.48 325985 68 10065 293010 3.32 303075 69 10236 298167 3.32 308403 70 9716 280222 3.35 289938 71 9892 267674 3.56 277566 72 9222 263402 3.38 272624 73 9162 261355 3.39 270517 74 9127 264310 3.34 273437 75 8765 244107 3.47 252872 76 8329 235121 3.42 243450 77 8310 234808 3.42 243118 78 8366 242345 3.34 250711 79 8173 231491 3.41 239664 80 7544 216520 3.37 224064 81 7611 209799 3.50 217410 82 7494 207739 3.48 215233 83 7171 192511 3.59 199682 84 6653 183547 3.50 190200 85 6445 178983 3.48 185428 86 6417 174699 3.54 181116 87 6208 168589 3.55 174797 88 6359 168591 3.63 174950 89 6275 162077 3.73 168352 90 5638 148773 3.65 154411 91 5626 144089 3.76 149715 92 5373 138348 3.74 143721 93 5067 133666 3.65 138733 94 5075 130905 3.73 135980 95 4893 127931 3.68 132824 96 4718 125638 3.62 130356 97 4572 121699 3.62 126271 98 4093 113794 3.47 117887 99 3297 108615 2.95 111912 100 1481 85555 1.70 87036