/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_5_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_5_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
31778715
Paired-end alignments with a unique best hit
10309461
Pairs without alignments under any condition
18728694
Pairs that did not map uniquely
2740560
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
370441524
Methylated C's in CpG context
30590802
Methylated C's in CHG context
2478038
Methylated C's in CHH context
10020162
Methylated C's in Unknown context
1213895
Unmethylated C's in CpG context
15985714
Unmethylated C's in CHG context
76625684
Unmethylated C's in CHH context
234741124
Unmethylated C's in Unknown context
5096608
Percentage methylation (CpG context)
65.7%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
4.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2677514
original top strand
CTOT
2476905
complementary to original top strand
CTOB
2486673
complementary to original bottom strand
OB
2668364
original bottom strand
Deduplication
Alignments analysed
10309456
Unique alignments
9873285
Duplicates removed
436171
Duplicated alignments were found at 368608 different positions
