zr2096_4_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7423370 lines in total Total number of methylation call strings processed: 14846740 Final Cytosine Methylation Report ================================= Total number of C's analysed: 186384892 Total methylated C's in CpG context: 14778915 Total methylated C's in CHG context: 1374799 Total methylated C's in CHH context: 6316301 Total C to T conversions in CpG context: 8756708 Total C to T conversions in CHG context: 38923593 Total C to T conversions in CHH context: 116234576 C methylated in CpG context: 62.8% C methylated in CHG context: 3.4% C methylated in CHH context: 5.2%