CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 108376 64068 62.85 172444 2 140341 84645 62.38 224986 3 138021 95596 59.08 233617 4 92991 98640 48.53 191631 5 84621 85545 49.73 170166 6 60010 61538 49.37 121548 7 67612 57176 54.18 124788 8 75352 59864 55.73 135216 9 81658 61591 57.00 143249 10 83173 57648 59.06 140821 11 97719 59592 62.12 157311 12 112640 60733 64.97 173373 13 102797 60382 63.00 163179 14 94476 59246 61.46 153722 15 96392 60531 61.43 156923 16 97883 61326 61.48 159209 17 103018 71809 58.93 174827 18 100730 62091 61.87 162821 19 100508 61104 62.19 161612 20 105325 63025 62.56 168350 21 106346 63936 62.45 170282 22 105457 62227 62.89 167684 23 106512 61771 63.29 168283 24 106569 62850 62.90 169419 25 108596 62311 63.54 170907 26 107880 61779 63.59 169659 27 108223 63175 63.14 171398 28 108255 61855 63.64 170110 29 109233 60914 64.20 170147 30 108421 61631 63.76 170052 31 109256 61571 63.96 170827 32 109805 61485 64.10 171290 33 110184 61658 64.12 171842 34 111410 60869 64.67 172279 35 112222 61623 64.55 173845 36 111565 62880 63.95 174445 37 111455 60653 64.76 172108 38 113227 61886 64.66 175113 39 112886 61456 64.75 174342 40 112145 60261 65.05 172406 41 114847 62028 64.93 176875 42 115685 61643 65.24 177328 43 114141 60406 65.39 174547 44 118286 61991 65.61 180277 45 117302 61566 65.58 178868 46 116677 60565 65.83 177242 47 116323 60222 65.89 176545 48 117470 61156 65.76 178626 49 118096 60933 65.96 179029 50 119759 61839 65.95 181598 51 116960 60977 65.73 177937 52 115286 60431 65.61 175717 53 115889 60015 65.88 175904 54 116730 60535 65.85 177265 55 116502 60412 65.85 176914 56 116572 61101 65.61 177673 57 117846 61242 65.80 179088 58 116705 60102 66.01 176807 59 116559 59811 66.09 176370 60 114827 60143 65.63 174970 61 114324 59056 65.94 173380 62 115173 58492 66.32 173665 63 114974 59168 66.02 174142 64 114912 59256 65.98 174168 65 115899 60063 65.87 175962 66 115985 60018 65.90 176003 67 116432 60774 65.70 177206 68 114626 59895 65.68 174521 69 113918 59484 65.70 173402 70 113725 58748 65.94 172473 71 113860 58900 65.91 172760 72 113179 58734 65.84 171913 73 111967 57887 65.92 169854 74 112439 58504 65.78 170943 75 111427 58231 65.68 169658 76 110466 58131 65.52 168597 77 110733 58045 65.61 168778 78 110567 58176 65.52 168743 79 109693 57564 65.58 167257 80 110184 57901 65.55 168085 81 109166 58141 65.25 167307 82 108228 58118 65.06 166346 83 107206 57556 65.07 164762 84 106631 58452 64.59 165083 85 104850 56901 64.82 161751 86 105100 56529 65.03 161629 87 104870 57441 64.61 162311 88 103966 57672 64.32 161638 89 103882 56428 64.80 160310 90 103704 56530 64.72 160234 91 101883 55915 64.57 157798 92 100939 56377 64.16 157316 93 99593 56394 63.85 155987 94 98009 55350 63.91 153359 95 96315 55682 63.37 151997 96 95204 55771 63.06 150975 97 92441 55276 62.58 147717 98 84099 52075 61.76 136174 99 68921 47820 59.04 116741 100 19383 28534 40.45 47917 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 94809 402707 19.06 497516 2 50649 144674 25.93 195323 3 51608 228747 18.41 280355 4 27385 279487 8.92 306872 5 16668 335459 4.73 352127 6 10344 377176 2.67 387520 7 9635 243757 3.80 253392 8 10621 238010 4.27 248631 9 9779 242849 3.87 252628 10 13766 242886 5.36 256652 11 21588 243340 8.15 264928 12 10140 254647 3.83 264787 13 10150 261194 3.74 271344 14 8587 261788 3.18 270375 15 10202 256900 3.82 267102 16 12011 261011 4.40 273022 17 8563 268043 3.10 276606 18 9310 284391 3.17 293701 19 8483 265526 3.10 274009 20 8262 266674 3.01 274936 21 8276 269239 2.98 277515 22 7675 272653 2.74 280328 23 7703 267713 2.80 275416 24 7463 267922 2.71 275385 25 7447 277634 2.61 285081 26 7361 275788 2.60 283149 27 7233 272126 2.59 279359 28 7066 279895 2.46 286961 29 7086 278813 2.48 285899 30 6828 278468 2.39 285296 31 6962 282395 2.41 289357 32 6678 277686 2.35 284364 33 6690 285147 2.29 291837 34 6846 286294 2.34 293140 35 6601 282666 2.28 289267 36 6687 282233 2.31 288920 37 6257 291208 2.10 297465 38 6347 286328 2.17 292675 39 6420 293654 2.14 300074 40 6126 286803 2.09 292929 41 6147 293968 2.05 300115 42 6033 292629 2.02 298662 43 6445 296724 2.13 303169 44 6201 288031 2.11 294232 45 5866 292448 1.97 298314 46 5696 291773 1.91 297469 47 5591 288103 1.90 293694 48 5723 290098 1.93 295821 49 5668 295866 1.88 301534 50 5477 293496 1.83 298973 51 5676 294580 1.89 300256 52 5444 295021 1.81 300465 53 5323 293444 1.78 298767 54 5391 289443 1.83 294834 55 5440 294930 1.81 300370 56 5294 291126 1.79 296420 57 5380 294164 1.80 299544 58 5153 290770 1.74 295923 59 5137 289356 1.74 294493 60 5132 287949 1.75 293081 61 5349 290883 1.81 296232 62 5030 288331 1.71 293361 63 5241 286333 1.80 291574 64 5135 288842 1.75 293977 65 5188 287672 1.77 292860 66 5258 287221 1.80 292479 67 5185 291760 1.75 296945 68 5227 284884 1.80 290111 69 5597 284294 1.93 289891 70 5181 285538 1.78 290719 71 5135 281927 1.79 287062 72 5413 281375 1.89 286788 73 5125 284657 1.77 289782 74 5061 279924 1.78 284985 75 5142 279387 1.81 284529 76 5003 278965 1.76 283968 77 5164 277329 1.83 282493 78 5108 275823 1.82 280931 79 5130 275183 1.83 280313 80 5129 273106 1.84 278235 81 5512 273713 1.97 279225 82 5242 272910 1.88 278152 83 5088 270031 1.85 275119 84 5192 269276 1.89 274468 85 5677 270863 2.05 276540 86 5519 267349 2.02 272868 87 5265 265997 1.94 271262 88 5405 267050 1.98 272455 89 5424 263929 2.01 269353 90 5384 263650 2.00 269034 91 5423 261713 2.03 267136 92 5566 260473 2.09 266039 93 5727 259909 2.16 265636 94 5758 262311 2.15 268069 95 5990 255555 2.29 261545 96 6128 255239 2.34 261367 97 6288 254685 2.41 260973 98 6535 249619 2.55 256154 99 6459 244207 2.58 250666 100 3321 196725 1.66 200046 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 218068 363211 37.52 581279 2 212570 470007 31.14 682577 3 166455 447622 27.11 614077 4 114112 533695 17.62 647807 5 74782 669357 10.05 744139 6 63348 769543 7.61 832891 7 59685 893026 6.26 952711 8 64386 888305 6.76 952691 9 50741 828433 5.77 879174 10 50356 814566 5.82 864922 11 56202 794919 6.60 851121 12 51185 793830 6.06 845015 13 51460 833552 5.81 885012 14 49300 836253 5.57 885553 15 54052 833451 6.09 887503 16 57062 789157 6.74 846219 17 50460 799956 5.93 850416 18 47812 801285 5.63 849097 19 52636 824833 6.00 877469 20 49123 837537 5.54 886660 21 48525 803036 5.70 851561 22 46114 805638 5.41 851752 23 48679 814381 5.64 863060 24 43571 819173 5.05 862744 25 46108 837819 5.22 883927 26 43924 846233 4.93 890157 27 43427 840853 4.91 884280 28 42319 857863 4.70 900182 29 43743 860046 4.84 903789 30 40369 859194 4.49 899563 31 42435 867268 4.66 909703 32 40317 855567 4.50 895884 33 39962 867002 4.41 906964 34 39131 865239 4.33 904370 35 39271 870667 4.32 909938 36 36869 871249 4.06 908118 37 38116 872375 4.19 910491 38 36046 874880 3.96 910926 39 36220 866040 4.01 902260 40 34685 869571 3.84 904256 41 35707 903342 3.80 939049 42 32586 872903 3.60 905489 43 34516 873825 3.80 908341 44 33499 883930 3.65 917429 45 31983 889059 3.47 921042 46 30846 887382 3.36 918228 47 31171 890971 3.38 922142 48 28891 884849 3.16 913740 49 29857 891820 3.24 921677 50 28754 899323 3.10 928077 51 28551 896971 3.08 925522 52 27683 887052 3.03 914735 53 28061 891756 3.05 919817 54 26187 876572 2.90 902759 55 27056 872104 3.01 899160 56 26500 888748 2.90 915248 57 26255 883364 2.89 909619 58 26005 897758 2.82 923763 59 26104 900594 2.82 926698 60 24372 869954 2.73 894326 61 25532 865090 2.87 890622 62 24486 884060 2.70 908546 63 23844 852659 2.72 876503 64 23911 849743 2.74 873654 65 24080 852775 2.75 876855 66 22795 853836 2.60 876631 67 23583 861155 2.67 884738 68 22939 848792 2.63 871731 69 24044 852744 2.74 876788 70 22354 846293 2.57 868647 71 22535 837135 2.62 859670 72 22484 833979 2.63 856463 73 21855 839031 2.54 860886 74 22063 849527 2.53 871590 75 21767 831647 2.55 853414 76 21298 825312 2.52 846610 77 21632 829961 2.54 851593 78 21406 840382 2.48 861788 79 21733 833080 2.54 854813 80 21417 821260 2.54 842677 81 21849 815806 2.61 837655 82 21120 817952 2.52 839072 83 21153 804618 2.56 825771 84 20829 794497 2.55 815326 85 22118 790399 2.72 812517 86 21487 789359 2.65 810846 87 20830 786026 2.58 806856 88 20983 791194 2.58 812177 89 21300 788174 2.63 809474 90 20797 773098 2.62 793895 91 20974 769464 2.65 790438 92 21014 767093 2.67 788107 93 21366 759644 2.74 781010 94 21657 761494 2.77 783151 95 22738 762560 2.90 785298 96 22612 762478 2.88 785090 97 24192 756124 3.10 780316 98 23936 739432 3.14 763368 99 21092 720432 2.84 741524 100 11527 605792 1.87 617319 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 96335 66181 59.28 162516 2 123528 81091 60.37 204619 3 121757 89184 57.72 210941 4 83310 85724 49.29 169034 5 71583 78289 47.76 149872 6 52655 54971 48.92 107626 7 55327 51159 51.96 106486 8 62752 52035 54.67 114787 9 65544 52082 55.72 117626 10 66452 48204 57.96 114656 11 75665 48138 61.12 123803 12 88161 48833 64.35 136994 13 82722 48097 63.23 130819 14 70924 45647 60.84 116571 15 71434 45589 61.04 117023 16 71933 46200 60.89 118133 17 75518 54548 58.06 130066 18 70320 44483 61.25 114803 19 68416 42501 61.68 110917 20 69539 42903 61.84 112442 21 69291 43378 61.50 112669 22 66313 41588 61.46 107901 23 65680 39406 62.50 105086 24 65179 39806 62.08 104985 25 65661 39274 62.57 104935 26 62857 37648 62.54 100505 27 61430 37773 61.92 99203 28 60543 36388 62.46 96931 29 59808 35140 62.99 94948 30 58085 34769 62.56 92854 31 57085 33574 62.97 90659 32 55403 33183 62.54 88586 33 55005 32407 62.93 87412 34 53595 31910 62.68 85505 35 53208 31410 62.88 84618 36 51189 31149 62.17 82338 37 50386 29398 63.15 79784 38 50267 29348 63.14 79615 39 48703 28632 62.98 77335 40 46612 27473 62.92 74085 41 47039 27740 62.90 74779 42 46218 26969 63.15 73187 43 44975 26306 63.10 71281 44 45629 25984 63.72 71613 45 43766 25436 63.24 69202 46 42207 24140 63.62 66347 47 41392 23319 63.96 64711 48 40801 23773 63.18 64574 49 39893 22885 63.55 62778 50 40335 23385 63.30 63720 51 37660 21955 63.17 59615 52 35691 21141 62.80 56832 53 35693 20754 63.23 56447 54 34735 20344 63.06 55079 55 34069 19993 63.02 54062 56 33496 19863 62.77 53359 57 32866 19517 62.74 52383 58 31699 18469 63.19 50168 59 30931 17999 63.21 48930 60 29605 17763 62.50 47368 61 28296 16696 62.89 44992 62 27750 16548 62.64 44298 63 27014 15815 63.07 42829 64 26142 15950 62.11 42092 65 26003 15871 62.10 41874 66 25819 15486 62.51 41305 67 25731 15463 62.46 41194 68 23759 14584 61.96 38343 69 22898 14182 61.75 37080 70 22472 13773 62.00 36245 71 21591 13482 61.56 35073 72 21205 12857 62.25 34062 73 20267 12676 61.52 32943 74 20260 12384 62.06 32644 75 19358 11955 61.82 31313 76 18719 11815 61.31 30534 77 18191 11223 61.84 29414 78 17240 11032 60.98 28272 79 16856 10848 60.84 27704 80 16413 10647 60.65 27060 81 16089 10154 61.31 26243 82 15258 10040 60.31 25298 83 14840 9596 60.73 24436 84 14060 9360 60.03 23420 85 13680 8875 60.65 22555 86 13011 8400 60.77 21411 87 12887 8437 60.43 21324 88 12779 8231 60.82 21010 89 11960 7758 60.66 19718 90 11612 7600 60.44 19212 91 11211 7278 60.64 18489 92 10570 6948 60.34 17518 93 10212 6960 59.47 17172 94 10140 6393 61.33 16533 95 9384 6072 60.71 15456 96 8910 5907 60.13 14817 97 8277 5497 60.09 13774 98 7346 5203 58.54 12549 99 5623 4709 54.42 10332 100 1582 2707 36.89 4289 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 83392 435503 16.07 518895 2 37727 151476 19.94 189203 3 39705 201415 16.47 241120 4 22753 250028 8.34 272781 5 16364 306967 5.06 323331 6 8933 335258 2.60 344191 7 8459 216981 3.75 225440 8 8417 203512 3.97 211929 9 7677 205247 3.61 212924 10 11235 198575 5.35 209810 11 19307 195514 8.99 214821 12 7988 200420 3.83 208408 13 8699 204554 4.08 213253 14 6473 202424 3.10 208897 15 8009 190471 4.04 198480 16 9927 188770 5.00 198697 17 6250 191582 3.16 197832 18 6869 203269 3.27 210138 19 5959 180104 3.20 186063 20 5878 177746 3.20 183624 21 5791 176016 3.19 181807 22 5081 174306 2.83 179387 23 5155 169268 2.96 174423 24 4918 163263 2.92 168181 25 4872 166299 2.85 171171 26 4651 162358 2.78 167009 27 4659 156795 2.89 161454 28 4383 155953 2.73 160336 29 4310 153461 2.73 157771 30 4112 149519 2.68 153631 31 3997 149005 2.61 153002 32 3836 143167 2.61 147003 33 3928 143652 2.66 147580 34 3658 142356 2.51 146014 35 3526 135518 2.54 139044 36 3479 132923 2.55 136402 37 3566 134261 2.59 137827 38 3223 129817 2.42 133040 39 3357 131651 2.49 135008 40 3069 123557 2.42 126626 41 3129 124017 2.46 127146 42 2891 119795 2.36 122686 43 3130 121582 2.51 124712 44 2650 114072 2.27 116722 45 2627 112943 2.27 115570 46 2480 109832 2.21 112312 47 2517 105500 2.33 108017 48 2574 104715 2.40 107289 49 2337 105186 2.17 107523 50 2306 101251 2.23 103557 51 2321 100694 2.25 103015 52 2092 97565 2.10 99657 53 2076 95238 2.13 97314 54 2057 90865 2.21 92922 55 1951 90829 2.10 92780 56 1917 87453 2.15 89370 57 1945 87245 2.18 89190 58 1883 81488 2.26 83371 59 1775 80497 2.16 82272 60 1717 77927 2.16 79644 61 1721 76565 2.20 78286 62 1648 74082 2.18 75730 63 1670 72106 2.26 73776 64 1565 70648 2.17 72213 65 1604 69414 2.26 71018 66 1545 67355 2.24 68900 67 1614 67436 2.34 69050 68 1588 63960 2.42 65548 69 1463 62322 2.29 63785 70 1449 61087 2.32 62536 71 1443 57455 2.45 58898 72 1400 56791 2.41 58191 73 1353 56181 2.35 57534 74 1293 53796 2.35 55089 75 1306 52788 2.41 54094 76 1334 51177 2.54 52511 77 1238 48844 2.47 50082 78 1186 47902 2.42 49088 79 1157 45736 2.47 46893 80 1139 44722 2.48 45861 81 1157 42652 2.64 43809 82 1009 41632 2.37 42641 83 1082 40329 2.61 41411 84 990 39055 2.47 40045 85 943 37836 2.43 38779 86 974 36909 2.57 37883 87 1002 35728 2.73 36730 88 965 34934 2.69 35899 89 899 33353 2.62 34252 90 896 32236 2.70 33132 91 859 31006 2.70 31865 92 826 30332 2.65 31158 93 814 29546 2.68 30360 94 860 30221 2.77 31081 95 784 26487 2.87 27271 96 746 25308 2.86 26054 97 706 24769 2.77 25475 98 620 23307 2.59 23927 99 551 22460 2.39 23011 100 200 16983 1.16 17183 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 166877 366924 31.26 533801 2 162115 479646 25.26 641761 3 131449 446664 22.74 578113 4 93599 506619 15.59 600218 5 66660 614795 9.78 681455 6 55964 688994 7.51 744958 7 51903 786996 6.19 838899 8 56273 768623 6.82 824896 9 41522 707158 5.55 748680 10 41310 686935 5.67 728245 11 47445 648599 6.82 696044 12 42497 632851 6.29 675348 13 41597 653324 5.99 694921 14 39782 646818 5.79 686600 15 43984 632957 6.50 676941 16 48239 583865 7.63 632104 17 40144 583186 6.44 623330 18 38072 575376 6.21 613448 19 41760 587992 6.63 629752 20 38155 581609 6.16 619764 21 37463 542302 6.46 579765 22 35176 532145 6.20 567321 23 36497 526235 6.49 562732 24 32390 520693 5.86 553083 25 34403 522158 6.18 556561 26 31912 519448 5.79 551360 27 32136 504969 5.98 537105 28 30083 507128 5.60 537211 29 31216 494510 5.94 525726 30 28538 488573 5.52 517111 31 29918 485082 5.81 515000 32 27983 464642 5.68 492625 33 27399 461397 5.61 488796 34 26075 454620 5.42 480695 35 26733 446282 5.65 473015 36 24103 439130 5.20 463233 37 25089 429296 5.52 454385 38 23246 419773 5.25 443019 39 23220 409726 5.36 432946 40 21863 404463 5.13 426326 41 22377 416168 5.10 438545 42 19743 387061 4.85 406804 43 20850 379200 5.21 400050 44 19237 373677 4.90 392914 45 18648 369265 4.81 387913 46 17777 362564 4.67 380341 47 17524 357503 4.67 375027 48 16200 345652 4.48 361852 49 16170 341252 4.52 357422 50 15586 337876 4.41 353462 51 14737 330938 4.26 345675 52 14301 317306 4.31 331607 53 13979 313134 4.27 327113 54 12981 299087 4.16 312068 55 12926 289020 4.28 301946 56 12399 290563 4.09 302962 57 11920 283298 4.04 295218 58 11965 287590 3.99 299555 59 11614 282144 3.95 293758 60 10583 258855 3.93 269438 61 10442 251281 3.99 261723 62 10391 256407 3.89 266798 63 9805 233786 4.03 243591 64 9434 227167 3.99 236601 65 9481 224117 4.06 233598 66 8694 220327 3.80 229021 67 9121 219647 3.99 228768 68 8509 205217 3.98 213726 69 8141 207828 3.77 215969 70 8000 196722 3.91 204722 71 7902 187561 4.04 195463 72 7229 184550 3.77 191779 73 7334 182099 3.87 189433 74 7182 182818 3.78 190000 75 6721 169494 3.81 176215 76 6563 162878 3.87 169441 77 6484 162497 3.84 168981 78 6465 165202 3.77 171667 79 6340 158205 3.85 164545 80 6015 148041 3.90 154056 81 5829 144057 3.89 149886 82 5803 142751 3.91 148554 83 5525 132721 4.00 138246 84 5178 126330 3.94 131508 85 4999 122384 3.92 127383 86 4817 118646 3.90 123463 87 4737 114700 3.97 119437 88 4558 114231 3.84 118789 89 4583 109901 4.00 114484 90 4173 101735 3.94 105908 91 4004 98504 3.91 102508 92 4107 93978 4.19 98085 93 3756 90847 3.97 94603 94 3709 88977 4.00 92686 95 3584 86596 3.97 90180 96 3399 85263 3.83 88662 97 3273 82215 3.83 85488 98 2924 76895 3.66 79819 99 2282 72990 3.03 75272 100 959 57349 1.64 58308