/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_4_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_4_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
24341968
Paired-end alignments with a unique best hit
7587323
Pairs without alignments under any condition
14662643
Pairs that did not map uniquely
2092002
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
268056140
Methylated C's in CpG context
21938186
Methylated C's in CHG context
1744867
Methylated C's in CHH context
7735389
Methylated C's in Unknown context
834133
Unmethylated C's in CpG context
12374431
Unmethylated C's in CHG context
56852641
Unmethylated C's in CHH context
167410626
Unmethylated C's in Unknown context
3707185
Percentage methylation (CpG context)
63.9%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
4.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1946078
original top strand
CTOT
1835678
complementary to original top strand
CTOB
1856529
complementary to original bottom strand
OB
1949037
original bottom strand
Deduplication
Alignments analysed
7587322
Unique alignments
7423370
Duplicates removed
163952
Duplicated alignments were found at 136766 different positions
