zr2096_3_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9734305 lines in total Total number of methylation call strings processed: 19468610 Final Cytosine Methylation Report ================================= Total number of C's analysed: 262062166 Total methylated C's in CpG context: 27665110 Total methylated C's in CHG context: 2000329 Total methylated C's in CHH context: 7413378 Total C to T conversions in CpG context: 9692932 Total C to T conversions in CHG context: 56032292 Total C to T conversions in CHH context: 159258125 C methylated in CpG context: 74.1% C methylated in CHG context: 3.4% C methylated in CHH context: 4.4%