CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 180461 85429 67.87 265890 2 242133 98711 71.04 340844 3 244373 110493 68.86 354866 4 166800 118650 58.43 285450 5 153067 97505 61.09 250572 6 108333 70813 60.47 179146 7 121758 67045 64.49 188803 8 135559 68648 66.38 204207 9 145315 71203 67.11 216518 10 149576 65584 69.52 215160 11 173952 66550 72.33 240502 12 197845 68824 74.19 266669 13 184705 67976 73.10 252681 14 172140 66283 72.20 238423 15 174912 67363 72.20 242275 16 177415 68792 72.06 246207 17 184721 79634 69.88 264355 18 184961 68524 72.97 253485 19 182986 66378 73.38 249364 20 191322 69143 73.45 260465 21 193955 69446 73.63 263401 22 191179 67019 74.04 258198 23 193626 67219 74.23 260845 24 195184 68609 73.99 263793 25 198557 67743 74.56 266300 26 196133 67269 74.46 263402 27 196578 68504 74.16 265082 28 197910 67006 74.71 264916 29 197890 66629 74.81 264519 30 199155 65597 75.22 264752 31 201531 65627 75.44 267158 32 200656 65784 75.31 266440 33 202651 65456 75.59 268107 34 203858 65296 75.74 269154 35 206595 66231 75.72 272826 36 205949 66498 75.59 272447 37 203999 63890 76.15 267889 38 208313 65251 76.15 273564 39 206828 64710 76.17 271538 40 206327 64060 76.31 270387 41 210094 65857 76.13 275951 42 212402 65301 76.49 277703 43 210892 63594 76.83 274486 44 216536 65111 76.88 281647 45 214103 64107 76.96 278210 46 213050 62595 77.29 275645 47 214300 62490 77.42 276790 48 216873 63881 77.25 280754 49 217651 63258 77.48 280909 50 219774 65093 77.15 284867 51 215017 63390 77.23 278407 52 213085 61733 77.54 274818 53 214839 62383 77.50 277222 54 216918 62531 77.62 279449 55 214887 62177 77.56 277064 56 215560 62570 77.50 278130 57 218029 64247 77.24 282276 58 215856 61493 77.83 277349 59 216487 62198 77.68 278685 60 215173 62357 77.53 277530 61 211133 60411 77.75 271544 62 213604 61543 77.63 275147 63 213054 61616 77.57 274670 64 213510 61682 77.59 275192 65 214937 62476 77.48 277413 66 216062 63291 77.34 279353 67 218350 63708 77.41 282058 68 214534 62046 77.57 276580 69 212401 62307 77.32 274708 70 210561 61900 77.28 272461 71 212152 61906 77.41 274058 72 209327 61247 77.36 270574 73 208468 61383 77.25 269851 74 210537 61134 77.50 271671 75 208484 61070 77.34 269554 76 206103 61018 77.16 267121 77 207034 60859 77.28 267893 78 206678 61727 77.00 268405 79 204757 60701 77.13 265458 80 205542 62052 76.81 267594 81 204542 62314 76.65 266856 82 201838 62243 76.43 264081 83 201810 61872 76.54 263682 84 201525 62240 76.40 263765 85 197014 60842 76.40 257856 86 197718 60906 76.45 258624 87 197000 62152 76.02 259152 88 196015 62177 75.92 258192 89 194382 60839 76.16 255221 90 193133 61135 75.96 254268 91 192223 60888 75.94 253111 92 189213 61272 75.54 250485 93 187768 61555 75.31 249323 94 183383 60064 75.33 243447 95 181835 61310 74.78 243145 96 180147 61310 74.61 241457 97 174960 61030 74.14 235990 98 159931 59059 73.03 218990 99 130043 54244 70.57 184287 100 36517 34985 51.07 71502 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 126007 566858 18.19 692865 2 67503 201802 25.07 269305 3 71614 315016 18.52 386630 4 37819 390340 8.83 428159 5 23684 468993 4.81 492677 6 14945 525833 2.76 540778 7 13554 341892 3.81 355446 8 15207 331443 4.39 346650 9 13883 339677 3.93 353560 10 19272 342162 5.33 361434 11 31150 342516 8.34 373666 12 14398 354638 3.90 369036 13 14258 367132 3.74 381390 14 12122 368440 3.19 380562 15 14904 361042 3.96 375946 16 17099 367929 4.44 385028 17 12831 379461 3.27 392292 18 13211 395705 3.23 408916 19 12460 374765 3.22 387225 20 11695 373241 3.04 384936 21 11889 379649 3.04 391538 22 11159 382034 2.84 393193 23 11547 375834 2.98 387381 24 10897 376400 2.81 387297 25 10990 393905 2.71 404895 26 10687 389670 2.67 400357 27 10763 382806 2.73 393569 28 10544 395401 2.60 405945 29 10199 391276 2.54 401475 30 9911 392761 2.46 402672 31 10247 398898 2.50 409145 32 9750 391788 2.43 401538 33 9941 402139 2.41 412080 34 9909 401487 2.41 411396 35 9553 397390 2.35 406943 36 9750 396114 2.40 405864 37 9190 409098 2.20 418288 38 9126 404582 2.21 413708 39 9664 415755 2.27 425419 40 9274 403477 2.25 412751 41 9061 414684 2.14 423745 42 8527 411040 2.03 419567 43 9314 419061 2.17 428375 44 8932 407517 2.14 416449 45 8406 411374 2.00 419780 46 8435 413284 2.00 421719 47 8403 404659 2.03 413062 48 8479 410669 2.02 419148 49 8208 421037 1.91 429245 50 8227 416127 1.94 424354 51 8444 415240 1.99 423684 52 8178 418058 1.92 426236 53 7833 412827 1.86 420660 54 8178 410475 1.95 418653 55 8024 418324 1.88 426348 56 7789 412831 1.85 420620 57 8168 415176 1.93 423344 58 7824 413468 1.86 421292 59 7918 411163 1.89 419081 60 7911 407066 1.91 414977 61 8089 412213 1.92 420302 62 7776 408083 1.87 415859 63 7991 407541 1.92 415532 64 7917 408924 1.90 416841 65 7846 408854 1.88 416700 66 7946 407495 1.91 415441 67 8047 415335 1.90 423382 68 7720 405211 1.87 412931 69 8440 405502 2.04 413942 70 7666 410425 1.83 418091 71 7763 400745 1.90 408508 72 8224 398210 2.02 406434 73 7747 405159 1.88 412906 74 7573 397826 1.87 405399 75 7812 397544 1.93 405356 76 7527 397854 1.86 405381 77 7628 395558 1.89 403186 78 7725 395598 1.92 403323 79 7898 394185 1.96 402083 80 7813 391655 1.96 399468 81 8222 391256 2.06 399478 82 7649 391768 1.92 399417 83 7725 389175 1.95 396900 84 8028 386061 2.04 394089 85 8343 389670 2.10 398013 86 8163 382979 2.09 391142 87 8116 382438 2.08 390554 88 8093 384139 2.06 392232 89 7973 380297 2.05 388270 90 8070 379458 2.08 387528 91 7943 376698 2.07 384641 92 8295 375910 2.16 384205 93 8614 374540 2.25 383154 94 8929 381229 2.29 390158 95 8638 368737 2.29 377375 96 9226 367481 2.45 376707 97 9374 368735 2.48 378109 98 9773 359594 2.65 369367 99 9624 352693 2.66 362317 100 4462 286371 1.53 290833 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 260111 470814 35.59 730925 2 258260 613647 29.62 871907 3 198652 581046 25.48 779698 4 135859 696621 16.32 832480 5 88691 887282 9.09 975973 6 76601 1028453 6.93 1105054 7 70561 1193402 5.58 1263963 8 77481 1185133 6.14 1262614 9 58243 1106424 5.00 1164667 10 57660 1091373 5.02 1149033 11 64577 1068093 5.70 1132670 12 59175 1060776 5.28 1119951 13 57552 1103488 4.96 1161040 14 55937 1105552 4.82 1161489 15 60452 1102287 5.20 1162739 16 64950 1055062 5.80 1120012 17 55759 1071717 4.95 1127476 18 53764 1066779 4.80 1120543 19 57609 1092234 5.01 1149843 20 55070 1111078 4.72 1166148 21 53310 1076106 4.72 1129416 22 51656 1073308 4.59 1124964 23 53659 1089708 4.69 1143367 24 48794 1093975 4.27 1142769 25 50541 1113035 4.34 1163576 26 48983 1127768 4.16 1176751 27 48525 1119493 4.15 1168018 28 46712 1140840 3.93 1187552 29 47925 1146548 4.01 1194473 30 45492 1143548 3.83 1189040 31 46091 1149709 3.85 1195800 32 44045 1140326 3.72 1184371 33 43953 1157862 3.66 1201815 34 44179 1156702 3.68 1200881 35 43930 1163906 3.64 1207836 36 41714 1161295 3.47 1203009 37 41333 1163100 3.43 1204433 38 40108 1175112 3.30 1215220 39 40110 1160513 3.34 1200623 40 39129 1163021 3.25 1202150 41 39750 1204316 3.20 1244066 42 36919 1171423 3.06 1208342 43 38691 1171126 3.20 1209817 44 38049 1183430 3.11 1221479 45 36053 1188195 2.94 1224248 46 35107 1191382 2.86 1226489 47 35453 1199572 2.87 1235025 48 33666 1189489 2.75 1223155 49 33643 1193090 2.74 1226733 50 33385 1205208 2.70 1238593 51 32921 1202969 2.66 1235890 52 31994 1192550 2.61 1224544 53 32439 1204464 2.62 1236903 54 31342 1183656 2.58 1214998 55 31559 1179886 2.61 1211445 56 30755 1202034 2.49 1232789 57 30706 1191089 2.51 1221795 58 30543 1204715 2.47 1235258 59 30483 1216907 2.44 1247390 60 29353 1178904 2.43 1208257 61 30414 1171773 2.53 1202187 62 29158 1200804 2.37 1229962 63 28768 1158279 2.42 1187047 64 28692 1151509 2.43 1180201 65 28694 1161178 2.41 1189872 66 28084 1155766 2.37 1183850 67 28705 1166222 2.40 1194927 68 27779 1153477 2.35 1181256 69 29446 1157139 2.48 1186585 70 27604 1151110 2.34 1178714 71 27777 1143310 2.37 1171087 72 27854 1135877 2.39 1163731 73 27350 1141213 2.34 1168563 74 26855 1158845 2.26 1185700 75 27135 1136835 2.33 1163970 76 26649 1128144 2.31 1154793 77 26571 1135222 2.29 1161793 78 26737 1146553 2.28 1173290 79 26655 1137621 2.29 1164276 80 26446 1123739 2.30 1150185 81 27540 1118145 2.40 1145685 82 26517 1120903 2.31 1147420 83 26915 1105885 2.38 1132800 84 26294 1093455 2.35 1119749 85 27928 1087235 2.50 1115163 86 27076 1089879 2.42 1116955 87 26615 1084449 2.40 1111064 88 26804 1090294 2.40 1117098 89 27171 1087860 2.44 1115031 90 26876 1067021 2.46 1093897 91 27092 1065137 2.48 1092229 92 27390 1058728 2.52 1086118 93 27964 1049416 2.60 1077380 94 28260 1054572 2.61 1082832 95 29283 1055999 2.70 1085282 96 29916 1056056 2.75 1085972 97 31014 1050678 2.87 1081692 98 31198 1031184 2.94 1062382 99 27623 1005467 2.67 1033090 100 14380 853352 1.66 867732 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 160649 86825 64.92 247474 2 208673 95172 68.68 303845 3 210659 102934 67.18 313593 4 145875 103628 58.47 249503 5 128388 88287 59.25 216675 6 94595 63947 59.67 158542 7 100442 59884 62.65 160326 8 112798 60064 65.25 172862 9 117756 60653 66.00 178409 10 121154 55636 68.53 176790 11 137174 54974 71.39 192148 12 157864 56367 73.69 214231 13 150380 55285 73.12 205665 14 131855 53103 71.29 184958 15 131618 52834 71.36 184452 16 132267 52885 71.44 185152 17 135027 62635 68.31 197662 18 131854 50895 72.15 182749 19 128108 48523 72.53 176631 20 131763 49095 72.85 180858 21 130809 49403 72.59 180212 22 125881 46669 72.95 172550 23 124831 45324 73.36 170155 24 124742 45893 73.10 170635 25 124919 44828 73.59 169747 26 120735 43514 73.51 164249 27 117863 42926 73.30 160789 28 116157 41410 73.72 157567 29 113799 39700 74.14 153499 30 111851 38970 74.16 150821 31 111067 38270 74.37 149337 32 108047 37744 74.11 145791 33 106740 37315 74.10 144055 34 105742 35990 74.61 141732 35 104953 36644 74.12 141597 36 102448 34948 74.56 137396 37 99568 33508 74.82 133076 38 99225 33170 74.95 132395 39 96413 32728 74.66 129141 40 93182 31449 74.77 124631 41 93983 31777 74.73 125760 42 93044 30738 75.17 123782 43 90110 29635 75.25 119745 44 90003 29061 75.59 119064 45 87328 28354 75.49 115682 46 84987 27260 75.71 112247 47 83707 26777 75.76 110484 48 83012 26810 75.59 109822 49 81930 26479 75.57 108409 50 81200 26075 75.69 107275 51 76882 24978 75.48 101860 52 74237 23766 75.75 98003 53 73463 23452 75.80 96915 54 72776 23374 75.69 96150 55 70754 22864 75.58 93618 56 68994 22830 75.14 91824 57 69036 22858 75.13 91894 58 66360 21223 75.77 87583 59 64548 20747 75.68 85295 60 62433 20333 75.43 82766 61 60407 19326 75.76 79733 62 58824 19346 75.25 78170 63 57814 18660 75.60 76474 64 56439 18485 75.33 74924 65 55881 18282 75.35 74163 66 55369 18071 75.39 73440 67 55151 18378 75.01 73529 68 51541 17265 74.91 68806 69 50259 16691 75.07 66950 70 48327 16314 74.76 64641 71 47627 16037 74.81 63664 72 46637 15527 75.02 62164 73 45406 15159 74.97 60565 74 44659 14979 74.88 59638 75 42698 14457 74.71 57155 76 41471 14450 74.16 55921 77 40157 13778 74.45 53935 78 39337 13517 74.43 52854 79 37754 13293 73.96 51047 80 36994 13120 73.82 50114 81 36332 12811 73.93 49143 82 34828 12164 74.11 46992 83 34088 11945 74.05 46033 84 32604 11973 73.14 44577 85 31391 10986 74.08 42377 86 30286 10773 73.76 41059 87 29984 10638 73.81 40622 88 29440 10684 73.37 40124 89 28258 10016 73.83 38274 90 27301 9857 73.47 37158 91 26580 9534 73.60 36114 92 25333 9127 73.51 34460 93 24974 9334 72.79 34308 94 23508 8691 73.01 32199 95 22827 8295 73.35 31122 96 22183 8179 73.06 30362 97 20680 7695 72.88 28375 98 18126 7063 71.96 25189 99 14060 6402 68.71 20462 100 3958 3938 50.13 7896 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 112739 587278 16.11 700017 2 54074 208239 20.61 262313 3 58666 281176 17.26 339842 4 33134 351302 8.62 384436 5 24104 424156 5.38 448260 6 13268 462371 2.79 475639 7 12381 302843 3.93 315224 8 12900 286433 4.31 299333 9 11920 288936 3.96 300856 10 16328 283433 5.45 299761 11 29289 277857 9.54 307146 12 12059 282680 4.09 294739 13 13022 291637 4.27 304659 14 9866 291271 3.28 301137 15 12063 273382 4.23 285445 16 15543 272048 5.40 287591 17 9648 278133 3.35 287781 18 10567 288752 3.53 299319 19 9470 262048 3.49 271518 20 8896 257310 3.34 266206 21 8540 257547 3.21 266087 22 7846 253443 3.00 261289 23 7874 246735 3.09 254609 24 7410 240044 2.99 247454 25 7271 247471 2.85 254742 26 7103 242386 2.85 249489 27 7081 230361 2.98 237442 28 6891 233224 2.87 240115 29 6651 227152 2.84 233803 30 6382 224324 2.77 230706 31 6339 223049 2.76 229388 32 5929 213962 2.70 219891 33 5819 215907 2.62 221726 34 5506 211097 2.54 216603 35 5446 203116 2.61 208562 36 5305 200150 2.58 205455 37 5397 202077 2.60 207474 38 4995 195744 2.49 200739 39 4932 198998 2.42 203930 40 4710 185958 2.47 190668 41 4823 187695 2.51 192518 42 4192 182680 2.24 186872 43 4488 185399 2.36 189887 44 4087 172715 2.31 176802 45 3990 172765 2.26 176755 46 3642 168037 2.12 171679 47 3782 161127 2.29 164909 48 3747 161375 2.27 165122 49 3523 161995 2.13 165518 50 3489 156386 2.18 159875 51 3518 155145 2.22 158663 52 3304 151108 2.14 154412 53 3079 146257 2.06 149336 54 3150 142264 2.17 145414 55 3196 140741 2.22 143937 56 2988 136302 2.15 139290 57 2963 136310 2.13 139273 58 2803 129486 2.12 132289 59 2806 126173 2.18 128979 60 2693 123172 2.14 125865 61 2625 121880 2.11 124505 62 2526 118008 2.10 120534 63 2585 115670 2.19 118255 64 2544 112221 2.22 114765 65 2549 110376 2.26 112925 66 2445 107825 2.22 110270 67 2630 107918 2.38 110548 68 2234 102374 2.14 104608 69 2261 99641 2.22 101902 70 2215 99663 2.17 101878 71 2188 93552 2.29 95740 72 2182 91179 2.34 93361 73 2138 90603 2.31 92741 74 2003 87908 2.23 89911 75 2084 85635 2.38 87719 76 1851 83058 2.18 84909 77 1852 80543 2.25 82395 78 1836 79585 2.25 81421 79 1896 76593 2.42 78489 80 1825 75109 2.37 76934 81 1754 71848 2.38 73602 82 1674 70042 2.33 71716 83 1649 68427 2.35 70076 84 1649 66374 2.42 68023 85 1532 65420 2.29 66952 86 1496 62490 2.34 63986 87 1517 61092 2.42 62609 88 1439 60653 2.32 62092 89 1475 58074 2.48 59549 90 1418 56240 2.46 57658 91 1292 54459 2.32 55751 92 1408 52930 2.59 54338 93 1395 52170 2.60 53565 94 1308 52675 2.42 53983 95 1216 47963 2.47 49179 96 1141 45823 2.43 46964 97 1187 44993 2.57 46180 98 1071 42143 2.48 43214 99 950 40561 2.29 41511 100 389 30837 1.25 31226 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 212931 482264 30.63 695195 2 211309 628032 25.18 839341 3 167145 586212 22.19 753357 4 118769 671888 15.02 790657 5 83749 820108 9.27 903857 6 71765 923301 7.21 995066 7 63237 1049979 5.68 1113216 8 71664 1025779 6.53 1097443 9 49206 948715 4.93 997921 10 48878 925694 5.02 974572 11 55441 879117 5.93 934558 12 51221 856184 5.64 907405 13 48074 874823 5.21 922897 14 45590 865161 5.01 910751 15 51002 853044 5.64 904046 16 58419 792718 6.86 851137 17 44691 798407 5.30 843098 18 43725 782252 5.29 825977 19 47046 794648 5.59 841694 20 43573 790272 5.23 833845 21 42112 748370 5.33 790482 22 39703 734128 5.13 773831 23 40269 730568 5.22 770837 24 36463 720333 4.82 756796 25 37631 724023 4.94 761654 26 35344 718408 4.69 753752 27 35055 697768 4.78 732823 28 33483 701811 4.55 735294 29 33492 690305 4.63 723797 30 31209 678162 4.40 709371 31 32089 672753 4.55 704842 32 30200 650718 4.44 680918 33 29268 648841 4.32 678109 34 28348 635018 4.27 663366 35 28651 627068 4.37 655719 36 26318 617185 4.09 643503 37 26686 605348 4.22 632034 38 24903 597247 4.00 622150 39 24644 582135 4.06 606779 40 23735 573370 3.98 597105 41 24087 585304 3.95 609391 42 21925 552836 3.81 574761 43 22466 541941 3.98 564407 44 20932 537252 3.75 558184 45 19919 529157 3.63 549076 46 19431 521629 3.59 541060 47 18782 514123 3.52 532905 48 17696 498871 3.43 516567 49 17003 491735 3.34 508738 50 16791 486213 3.34 503004 51 16054 477463 3.25 493517 52 15572 463113 3.25 478685 53 15135 458478 3.20 473613 54 14320 439082 3.16 453402 55 14131 427800 3.20 441931 56 13813 429952 3.11 443765 57 12879 417742 2.99 430621 58 12948 418057 3.00 431005 59 12732 413587 2.99 426319 60 12247 384779 3.08 397026 61 11715 375182 3.03 386897 62 11591 380748 2.95 392339 63 11135 354647 3.04 365782 64 10735 343120 3.03 353855 65 10431 340939 2.97 351370 66 10034 333275 2.92 343309 67 10685 330692 3.13 341377 68 9494 313693 2.94 323187 69 9633 314302 2.97 323935 70 9125 300192 2.95 309317 71 9285 288284 3.12 297569 72 8352 283956 2.86 292308 73 8312 279388 2.89 287700 74 8427 280119 2.92 288546 75 8093 262352 2.99 270445 76 7670 255548 2.91 263218 77 7671 253540 2.94 261211 78 7558 255758 2.87 263316 79 7398 247249 2.91 254647 80 7048 234921 2.91 241969 81 7047 228042 3.00 235089 82 6885 224636 2.97 231521 83 6607 212752 3.01 219359 84 6218 204454 2.95 210672 85 6070 199838 2.95 205908 86 5824 194923 2.90 200747 87 5748 190129 2.93 195877 88 5716 187395 2.96 193111 89 5569 182061 2.97 187630 90 5332 171524 3.01 176856 91 5070 166279 2.96 171349 92 5101 160662 3.08 165763 93 4779 155429 2.98 160208 94 4697 152231 2.99 156928 95 4555 148965 2.97 153520 96 4358 146743 2.88 151101 97 4241 143625 2.87 147866 98 3723 135677 2.67 139400 99 3031 130025 2.28 133056 100 1321 101687 1.28 103008