/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_3_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_3_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
29892002
Paired-end alignments with a unique best hit
10170153
Pairs without alignments under any condition
16789874
Pairs that did not map uniquely
2931975
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
380186993
Methylated C's in CpG context
41316176
Methylated C's in CHG context
2588230
Methylated C's in CHH context
9338662
Methylated C's in Unknown context
1160192
Unmethylated C's in CpG context
13734426
Unmethylated C's in CHG context
82498352
Unmethylated C's in CHH context
230711147
Unmethylated C's in Unknown context
4951346
Percentage methylation (CpG context)
75.1%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
3.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2554767
original top strand
CTOT
2514160
complementary to original top strand
CTOB
2537491
complementary to original bottom strand
OB
2563734
original bottom strand
Deduplication
Alignments analysed
10170152
Unique alignments
9734305
Duplicates removed
435847
Duplicated alignments were found at 329738 different positions
