zr2096_2_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7582898 lines in total Total number of methylation call strings processed: 15165796 Final Cytosine Methylation Report ================================= Total number of C's analysed: 190616346 Total methylated C's in CpG context: 16881804 Total methylated C's in CHG context: 1484733 Total methylated C's in CHH context: 7213704 Total C to T conversions in CpG context: 8165931 Total C to T conversions in CHG context: 40637178 Total C to T conversions in CHH context: 116232996 C methylated in CpG context: 67.4% C methylated in CHG context: 3.5% C methylated in CHH context: 5.8%