CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 117462 67213 63.60 184675 2 155979 81570 65.66 237549 3 155303 92978 62.55 248281 4 108352 93336 53.72 201688 5 97576 82338 54.23 179914 6 69729 59872 53.80 129601 7 77369 55368 58.29 132737 8 88606 58279 60.32 146885 9 93935 59907 61.06 153842 10 96613 55554 63.49 152167 11 112084 56791 66.37 168875 12 126575 58454 68.41 185029 13 119301 58518 67.09 177819 14 109829 56608 65.99 166437 15 113266 57496 66.33 170762 16 113554 58414 66.03 171968 17 120783 68230 63.90 189013 18 118464 59677 66.50 178141 19 118171 57431 67.29 175602 20 122243 59181 67.38 181424 21 124890 60623 67.32 185513 22 122758 58211 67.83 180969 23 124564 57794 68.31 182358 24 125649 60180 67.62 185829 25 126945 58894 68.31 185839 26 126715 58140 68.55 184855 27 126861 59953 67.91 186814 28 127357 58306 68.60 185663 29 127512 58033 68.72 185545 30 127824 57990 68.79 185814 31 128466 57761 68.98 186227 32 128806 58083 68.92 186889 33 129513 58198 69.00 187711 34 131041 57129 69.64 188170 35 132141 58657 69.26 190798 36 131492 58678 69.14 190170 37 130376 57420 69.42 187796 38 133143 57499 69.84 190642 39 133528 58440 69.56 191968 40 131820 57040 69.80 188860 41 135293 58732 69.73 194025 42 135489 58022 70.02 193511 43 134746 56913 70.31 191659 44 138180 58220 70.36 196400 45 137281 57600 70.44 194881 46 136946 56365 70.84 193311 47 136354 56511 70.70 192865 48 138047 57524 70.59 195571 49 138090 57349 70.66 195439 50 140796 58278 70.73 199074 51 137745 57221 70.65 194966 52 134728 55976 70.65 190704 53 136002 55833 70.90 191835 54 137809 56701 70.85 194510 55 136677 55958 70.95 192635 56 137470 56787 70.77 194257 57 138369 57247 70.74 195616 58 136589 55680 71.04 192269 59 136546 55780 71.00 192326 60 136313 56211 70.80 192524 61 133200 54464 70.98 187664 62 135003 54988 71.06 189991 63 134553 55068 70.96 189621 64 135267 55099 71.06 190366 65 135705 55512 70.97 191217 66 135478 56530 70.56 192008 67 136656 56894 70.61 193550 68 134656 55331 70.88 189987 69 132760 55320 70.59 188080 70 132771 54766 70.80 187537 71 132553 54545 70.85 187098 72 131118 54420 70.67 185538 73 131058 54124 70.77 185182 74 131396 53804 70.95 185200 75 130115 53928 70.70 184043 76 128646 53470 70.64 182116 77 128983 53694 70.61 182677 78 128511 53756 70.51 182267 79 127258 53496 70.40 180754 80 127954 53990 70.33 181944 81 127347 54351 70.09 181698 82 125218 53615 70.02 178833 83 124726 53636 69.93 178362 84 124280 53801 69.79 178081 85 122340 52778 69.86 175118 86 122478 52384 70.04 174862 87 121636 52923 69.68 174559 88 121275 53290 69.47 174565 89 119453 51955 69.69 171408 90 118157 52402 69.28 170559 91 117490 51394 69.57 168884 92 116097 51684 69.20 167781 93 114190 51541 68.90 165731 94 111536 50947 68.64 162483 95 110665 50705 68.58 161370 96 108842 52101 67.63 160943 97 104842 50849 67.34 155691 98 96007 48694 66.35 144701 99 78239 44862 63.56 123101 100 22068 27627 44.41 49695 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 93837 439928 17.58 533765 2 50580 154811 24.63 205391 3 51514 238526 17.76 290040 4 28007 296006 8.64 324013 5 17296 354100 4.66 371396 6 11144 397450 2.73 408594 7 10043 259169 3.73 269212 8 10977 250964 4.19 261941 9 10282 258936 3.82 269218 10 13689 258225 5.03 271914 11 21221 258119 7.60 279340 12 10567 271754 3.74 282321 13 10674 279000 3.68 289674 14 9130 278363 3.18 287493 15 10981 272892 3.87 283873 16 12094 277521 4.18 289615 17 9224 284886 3.14 294110 18 9565 302258 3.07 311823 19 9065 283414 3.10 292479 20 8835 284347 3.01 293182 21 8755 286551 2.96 295306 22 8516 288923 2.86 297439 23 8714 282865 2.99 291579 24 8270 284642 2.82 292912 25 8169 297414 2.67 305583 26 8202 293913 2.71 302115 27 7968 290158 2.67 298126 28 8055 299015 2.62 307070 29 7907 297341 2.59 305248 30 7621 298055 2.49 305676 31 7776 301517 2.51 309293 32 7391 296013 2.44 303404 33 7472 304833 2.39 312305 34 7671 305982 2.45 313653 35 7218 302607 2.33 309825 36 7241 301001 2.35 308242 37 7309 312229 2.29 319538 38 7110 304966 2.28 312076 39 7325 314639 2.28 321964 40 6800 304529 2.18 311329 41 6909 312444 2.16 319353 42 6749 311775 2.12 318524 43 7026 317699 2.16 324725 44 6816 308039 2.16 314855 45 6411 310365 2.02 316776 46 6329 311927 1.99 318256 47 6345 307243 2.02 313588 48 6428 309601 2.03 316029 49 6245 315890 1.94 322135 50 6135 312205 1.93 318340 51 6624 313148 2.07 319772 52 6117 314311 1.91 320428 53 6217 311315 1.96 317532 54 5944 308056 1.89 314000 55 6394 314279 1.99 320673 56 5984 310077 1.89 316061 57 6247 312642 1.96 318889 58 6067 308943 1.93 315010 59 6150 309049 1.95 315199 60 5912 305799 1.90 311711 61 6114 310039 1.93 316153 62 5838 305923 1.87 311761 63 5882 305479 1.89 311361 64 6054 305006 1.95 311060 65 5970 305071 1.92 311041 66 6012 305118 1.93 311130 67 5999 309562 1.90 315561 68 5877 302255 1.91 308132 69 6508 300415 2.12 306923 70 5926 304625 1.91 310551 71 5943 298257 1.95 304200 72 6075 297110 2.00 303185 73 5747 299810 1.88 305557 74 5742 295282 1.91 301024 75 5934 296019 1.97 301953 76 5707 295529 1.89 301236 77 5656 292636 1.90 298292 78 5853 291457 1.97 297310 79 5978 289999 2.02 295977 80 5815 287886 1.98 293701 81 6284 287409 2.14 293693 82 5921 287144 2.02 293065 83 5908 284442 2.03 290350 84 5849 282678 2.03 288527 85 6320 285001 2.17 291321 86 6182 279445 2.16 285627 87 5958 279314 2.09 285272 88 6086 280064 2.13 286150 89 5910 275371 2.10 281281 90 6093 273335 2.18 279428 91 6030 273753 2.16 279783 92 6165 271087 2.22 277252 93 6239 270304 2.26 276543 94 6574 274124 2.34 280698 95 6659 266770 2.44 273429 96 6903 265376 2.54 272279 97 7222 264365 2.66 271587 98 7613 258427 2.86 266040 99 7545 254600 2.88 262145 100 3532 204302 1.70 207834 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 213547 377298 36.14 590845 2 209919 487520 30.10 697439 3 164920 457025 26.52 621945 4 118163 542876 17.88 661039 5 78432 688956 10.22 767388 6 67041 795734 7.77 862775 7 65912 917960 6.70 983872 8 69170 915748 7.02 984918 9 56599 847481 6.26 904080 10 56863 838926 6.35 895789 11 63215 821957 7.14 885172 12 57178 817556 6.54 874734 13 58451 855208 6.40 913659 14 56581 856998 6.19 913579 15 60216 850906 6.61 911122 16 61749 811065 7.07 872814 17 57611 820390 6.56 878001 18 53545 821980 6.12 875525 19 59700 844912 6.60 904612 20 55938 857699 6.12 913637 21 54513 826467 6.19 880980 22 52890 824781 6.03 877671 23 55847 832108 6.29 887955 24 49947 837205 5.63 887152 25 53096 853354 5.86 906450 26 51497 864103 5.62 915600 27 50992 856968 5.62 907960 28 48933 876330 5.29 925263 29 51047 876886 5.50 927933 30 46728 878534 5.05 925262 31 50010 882026 5.37 932036 32 47638 872271 5.18 919909 33 46826 886042 5.02 932868 34 46529 884530 5.00 931059 35 47088 889706 5.03 936794 36 43226 887127 4.65 930353 37 45098 887152 4.84 932250 38 42605 894272 4.55 936877 39 42748 884143 4.61 926891 40 41173 885384 4.44 926557 41 42798 922084 4.44 964882 42 38925 891505 4.18 930430 43 41513 890346 4.45 931859 44 40288 898158 4.29 938446 45 38200 901882 4.06 940082 46 37296 901449 3.97 938745 47 38131 906464 4.04 944595 48 35082 897470 3.76 932552 49 35905 902922 3.82 938827 50 35274 914283 3.71 949557 51 34436 908972 3.65 943408 52 33855 897940 3.63 931795 53 34188 905889 3.64 940077 54 31614 888843 3.43 920457 55 32768 884090 3.57 916858 56 32141 901656 3.44 933797 57 31385 892775 3.40 924160 58 30906 907354 3.29 938260 59 31419 912109 3.33 943528 60 29218 880768 3.21 909986 61 30905 872428 3.42 903333 62 29346 894187 3.18 923533 63 28796 860107 3.24 888903 64 28606 855771 3.23 884377 65 28700 862783 3.22 891483 66 27159 858737 3.07 885896 67 28027 865880 3.14 893907 68 27417 851925 3.12 879342 69 28092 858836 3.17 886928 70 26844 850497 3.06 877341 71 27002 841082 3.11 868084 72 26675 838284 3.08 864959 73 26349 841015 3.04 867364 74 26160 853023 2.98 879183 75 25731 833422 2.99 859153 76 25234 827392 2.96 852626 77 25461 834949 2.96 860410 78 25100 840280 2.90 865380 79 25412 834643 2.95 860055 80 24729 822028 2.92 846757 81 25251 817159 3.00 842410 82 24865 817979 2.95 842844 83 24776 803943 2.99 828719 84 23815 793682 2.91 817497 85 25217 788298 3.10 813515 86 24750 788932 3.04 813682 87 23619 784762 2.92 808381 88 24404 787624 3.01 812028 89 24682 785740 3.05 810422 90 23745 769778 2.99 793523 91 24471 767455 3.09 791926 92 24398 763310 3.10 787708 93 24108 756063 3.09 780171 94 24913 755761 3.19 780674 95 25833 758113 3.30 783946 96 25961 755604 3.32 781565 97 27191 747788 3.51 774979 98 27428 733716 3.60 761144 99 23953 713935 3.25 737888 100 12535 599013 2.05 611548 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 104244 66753 60.96 170997 2 133851 77072 63.46 210923 3 133129 85182 60.98 218311 4 92138 81187 53.16 173325 5 80707 74021 52.16 154728 6 58506 52846 52.54 111352 7 61505 48188 56.07 109693 8 71096 49656 58.88 120752 9 73317 50018 59.45 123335 10 74875 45434 62.24 120309 11 84182 45048 65.14 129230 12 97949 46265 67.92 144214 13 92977 45505 67.14 138482 14 79990 42733 65.18 122723 15 80014 43019 65.03 123033 16 80249 42830 65.20 123079 17 82342 51171 61.67 133513 18 78755 41044 65.74 119799 19 76518 39087 66.19 115605 20 77852 39508 66.34 117360 21 76745 39802 65.85 116547 22 73447 38040 65.88 111487 23 72437 36260 66.64 108697 24 72634 36866 66.33 109500 25 72455 35974 66.82 108429 26 69419 34395 66.87 103814 27 67932 34650 66.22 102582 28 67178 33603 66.66 100781 29 65181 31878 67.16 97059 30 63734 31531 66.90 95265 31 62383 30522 67.15 92905 32 60854 29968 67.00 90822 33 59726 29524 66.92 89250 34 59055 28665 67.32 87720 35 58570 28539 67.24 87109 36 56059 27764 66.88 83823 37 54898 26544 67.41 81442 38 54300 26956 66.83 81256 39 52574 26050 66.87 78624 40 50774 24632 67.33 75406 41 51426 25500 66.85 76926 42 50317 24711 67.06 75028 43 49148 23415 67.73 72563 44 49195 23291 67.87 72486 45 47322 22477 67.80 69799 46 45407 21538 67.83 66945 47 43944 21006 67.66 64950 48 43837 20877 67.74 64714 49 42992 20614 67.59 63606 50 42595 20542 67.46 63137 51 40120 19738 67.03 59858 52 38538 18783 67.23 57321 53 37526 18082 67.48 55608 54 37470 17826 67.76 55296 55 36218 17652 67.23 53870 56 35386 17898 66.41 53284 57 35070 17738 66.41 52808 58 33559 16458 67.10 50017 59 32330 15659 67.37 47989 60 31673 15736 66.81 47409 61 30196 14714 67.24 44910 62 29365 14435 67.04 43800 63 28409 14319 66.49 42728 64 27758 14109 66.30 41867 65 27533 14034 66.24 41567 66 27142 14045 65.90 41187 67 27022 13881 66.06 40903 68 24922 12590 66.44 37512 69 24026 12268 66.20 36294 70 23166 12001 65.87 35167 71 22275 11403 66.14 33678 72 22087 11303 66.15 33390 73 21288 10775 66.39 32063 74 20600 10645 65.93 31245 75 19479 10548 64.87 30027 76 18994 10186 65.09 29180 77 18268 9722 65.27 27990 78 17559 9542 64.79 27101 79 16868 9351 64.34 26219 80 16796 9126 64.79 25922 81 16102 8854 64.52 24956 82 15498 8531 64.50 24029 83 14649 8290 63.86 22939 84 14225 7998 64.01 22223 85 13681 7433 64.80 21114 86 12970 7221 64.24 20191 87 12498 7168 63.55 19666 88 12178 6959 63.64 19137 89 11700 6415 64.59 18115 90 11055 6189 64.11 17244 91 10566 5925 64.07 16491 92 10242 5567 64.79 15809 93 9692 5544 63.61 15236 94 9267 5191 64.10 14458 95 8725 4770 64.65 13495 96 8415 4664 64.34 13079 97 7873 4501 63.63 12374 98 6753 3963 63.02 10716 99 5295 3444 60.59 8739 100 1451 2146 40.34 3597 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 84664 452195 15.77 536859 2 41205 157117 20.78 198322 3 43688 210529 17.19 254217 4 24586 261778 8.59 286364 5 17563 314721 5.29 332284 6 10218 342657 2.90 352875 7 9256 223624 3.97 232880 8 9278 209436 4.24 218714 9 8767 213104 3.95 221871 10 12161 205800 5.58 217961 11 20903 200264 9.45 221167 12 8789 207435 4.06 216224 13 9561 210525 4.34 220086 14 7349 209114 3.40 216463 15 8709 196607 4.24 205316 16 11161 193239 5.46 204400 17 7011 197439 3.43 204450 18 7467 207308 3.48 214775 19 6566 184491 3.44 191057 20 6374 181257 3.40 187631 21 6250 180797 3.34 187047 22 5787 177927 3.15 183714 23 5687 170479 3.23 176166 24 5363 165883 3.13 171246 25 5445 170798 3.09 176243 26 5284 166368 3.08 171652 27 5045 159109 3.07 164154 28 5050 160357 3.05 165407 29 4911 155248 3.07 160159 30 4542 152609 2.89 157151 31 4631 150351 2.99 154982 32 4451 144104 3.00 148555 33 4348 146654 2.88 151002 34 4139 143538 2.80 147677 35 4101 137050 2.91 141151 36 3870 134252 2.80 138122 37 4032 136547 2.87 140579 38 3609 130080 2.70 133689 39 3645 132627 2.67 136272 40 3454 123478 2.72 126932 41 3527 124720 2.75 128247 42 3249 121290 2.61 124539 43 3464 122274 2.75 125738 44 2982 113282 2.56 116264 45 2883 112763 2.49 115646 46 2903 109936 2.57 112839 47 2803 104892 2.60 107695 48 2728 104554 2.54 107282 49 2626 103622 2.47 106248 50 2449 99521 2.40 101970 51 2558 99927 2.50 102485 52 2439 96359 2.47 98798 53 2378 93637 2.48 96015 54 2275 89786 2.47 92061 55 2223 89202 2.43 91425 56 2178 85536 2.48 87714 57 2168 86034 2.46 88202 58 2120 80374 2.57 82494 59 2041 78632 2.53 80673 60 1942 76329 2.48 78271 61 1875 75776 2.41 77651 62 1823 72501 2.45 74324 63 1926 70192 2.67 72118 64 1819 67582 2.62 69401 65 1699 67130 2.47 68829 66 1751 65171 2.62 66922 67 1890 65462 2.81 67352 68 1658 61872 2.61 63530 69 1590 59774 2.59 61364 70 1576 58360 2.63 59936 71 1651 54921 2.92 56572 72 1517 54078 2.73 55595 73 1401 52741 2.59 54142 74 1418 51209 2.69 52627 75 1414 49940 2.75 51354 76 1333 48043 2.70 49376 77 1291 45724 2.75 47015 78 1335 44929 2.89 46264 79 1268 43128 2.86 44396 80 1271 41685 2.96 42956 81 1278 39786 3.11 41064 82 1096 38479 2.77 39575 83 1139 37372 2.96 38511 84 1028 36100 2.77 37128 85 1050 35022 2.91 36072 86 1054 33321 3.07 34375 87 994 32711 2.95 33705 88 1020 31752 3.11 32772 89 917 29803 2.99 30720 90 924 28525 3.14 29449 91 848 27874 2.95 28722 92 877 26990 3.15 27867 93 784 25892 2.94 26676 94 847 26176 3.13 27023 95 765 23523 3.15 24288 96 747 22132 3.27 22879 97 723 21323 3.28 22046 98 640 19853 3.12 20493 99 553 18973 2.83 19526 100 200 14329 1.38 14529 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 179679 384360 31.86 564039 2 177127 492443 26.45 669570 3 141901 455016 23.77 596917 4 104034 511908 16.89 615942 5 74941 624596 10.71 699537 6 63216 700617 8.28 763833 7 60034 792758 7.04 852792 8 64348 774623 7.67 838971 9 49599 706828 6.56 756427 10 48791 689221 6.61 738012 11 55701 653994 7.85 709695 12 49865 635116 7.28 684981 13 49242 651121 7.03 700363 14 47384 642350 6.87 689734 15 51663 629948 7.58 681611 16 55490 581042 8.72 636532 17 47369 581710 7.53 629079 18 44085 573517 7.14 617602 19 49551 580980 7.86 630531 20 45353 575718 7.30 621071 21 43863 538960 7.53 582823 22 42180 527064 7.41 569244 23 43390 518689 7.72 562079 24 38242 514471 6.92 552713 25 41080 513224 7.41 554304 26 38785 510681 7.06 549466 27 38247 494746 7.18 532993 28 36508 498634 6.82 535142 29 37457 485580 7.16 523037 30 33746 479089 6.58 512835 31 36446 475897 7.11 512343 32 34005 454757 6.96 488762 33 32472 453238 6.69 485710 34 31644 442810 6.67 474454 35 32711 434950 6.99 467661 36 28949 427702 6.34 456651 37 30841 418491 6.86 449332 38 28098 409715 6.42 437813 39 28201 397452 6.63 425653 40 26687 391946 6.37 418633 41 27349 403506 6.35 430855 42 24214 376018 6.05 400232 43 25832 367783 6.56 393615 44 23385 362861 6.05 386246 45 22938 356352 6.05 379290 46 21748 349813 5.85 371561 47 21909 343771 5.99 365680 48 19610 332278 5.57 351888 49 19908 327900 5.72 347808 50 18959 323821 5.53 342780 51 18461 316935 5.50 335396 52 17517 303668 5.45 321185 53 17366 299208 5.49 316574 54 15704 284516 5.23 300220 55 16039 275140 5.51 291179 56 15310 276336 5.25 291646 57 14559 267806 5.16 282365 58 14423 271415 5.05 285838 59 14216 265863 5.08 280079 60 12764 243573 4.98 256337 61 12764 234619 5.16 247383 62 12651 238990 5.03 251641 63 11763 217723 5.13 229486 64 11442 210003 5.17 221445 65 11363 208153 5.18 219516 66 10220 204473 4.76 214693 67 10895 202549 5.10 213444 68 10123 189065 5.08 199188 69 9649 190858 4.81 200507 70 9312 180405 4.91 189717 71 9877 170574 5.47 180451 72 8737 167452 4.96 176189 73 8625 164957 4.97 173582 74 8560 165761 4.91 174321 75 7883 153078 4.90 160961 76 7687 146492 4.99 154179 77 7693 145591 5.02 153284 78 7293 148491 4.68 155784 79 7383 141606 4.96 148989 80 6935 131923 4.99 138858 81 6605 128065 4.90 134670 82 6655 124953 5.06 131608 83 6363 115749 5.21 122112 84 6013 109741 5.19 115754 85 5653 106187 5.05 111840 86 5556 102966 5.12 108522 87 5312 98603 5.11 103915 88 5280 97342 5.15 102622 89 5262 93736 5.32 98998 90 4562 86307 5.02 90869 91 4544 82253 5.24 86797 92 4380 78543 5.28 82923 93 4077 74982 5.16 79059 94 3935 72877 5.12 76812 95 3843 70677 5.16 74520 96 3569 69302 4.90 72871 97 3487 66454 4.99 69941 98 3085 61852 4.75 64937 99 2389 58554 3.92 60943 100 960 46098 2.04 47058