/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_2_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_2_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
30798582
Paired-end alignments with a unique best hit
7879875
Pairs without alignments under any condition
20682061
Pairs that did not map uniquely
2236646
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
282047529
Methylated C's in CpG context
25969563
Methylated C's in CHG context
1938729
Methylated C's in CHH context
9023855
Methylated C's in Unknown context
934954
Unmethylated C's in CpG context
11825530
Unmethylated C's in CHG context
61284539
Unmethylated C's in CHH context
172005313
Unmethylated C's in Unknown context
3930167
Percentage methylation (CpG context)
68.7%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
5.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1988714
original top strand
CTOT
1934508
complementary to original top strand
CTOB
1961754
complementary to original bottom strand
OB
1994898
original bottom strand
Deduplication
Alignments analysed
7879874
Unique alignments
7582898
Duplicates removed
296976
Duplicated alignments were found at 239515 different positions
