zr2096_1_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4407890 lines in total Total number of methylation call strings processed: 8815780 Final Cytosine Methylation Report ================================= Total number of C's analysed: 117187042 Total methylated C's in CpG context: 10156041 Total methylated C's in CHG context: 867748 Total methylated C's in CHH context: 3830928 Total C to T conversions in CpG context: 4825412 Total C to T conversions in CHG context: 23903571 Total C to T conversions in CHH context: 73603342 C methylated in CpG context: 67.8% C methylated in CHG context: 3.5% C methylated in CHH context: 4.9%