CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 64920 39085 62.42 104005 2 89298 48753 64.68 138051 3 87170 54980 61.32 142150 4 60799 56643 51.77 117442 5 53938 47325 53.27 101263 6 39263 33810 53.73 73073 7 43823 31371 58.28 75194 8 49515 32543 60.34 82058 9 53285 33630 61.31 86915 10 54574 31221 63.61 85795 11 63151 31937 66.41 95088 12 72397 32762 68.85 105159 13 67579 32494 67.53 100073 14 62385 31978 66.11 94363 15 62865 32116 66.19 94981 16 64691 32453 66.59 97144 17 69678 36082 65.88 105760 18 66847 33671 66.50 100518 19 66844 32378 67.37 99222 20 68966 33203 67.50 102169 21 70831 34304 67.37 105135 22 70087 33320 67.78 103407 23 69711 32979 67.88 102690 24 70363 33443 67.78 103806 25 71472 33133 68.33 104605 26 70675 32789 68.31 103464 27 71186 33710 67.86 104896 28 71088 32549 68.59 103637 29 71747 32739 68.67 104486 30 71542 32670 68.65 104212 31 71688 32728 68.66 104416 32 72780 32606 69.06 105386 33 72307 32662 68.88 104969 34 73571 31603 69.95 105174 35 73902 32705 69.32 106607 36 73887 33068 69.08 106955 37 72968 32236 69.36 105204 38 74530 32565 69.59 107095 39 73908 32402 69.52 106310 40 73940 31879 69.87 105819 41 75740 32445 70.01 108185 42 76010 32655 69.95 108665 43 76019 32051 70.34 108070 44 77926 32158 70.79 110084 45 76394 32453 70.18 108847 46 76425 31695 70.69 108120 47 77338 31625 70.98 108963 48 77309 32184 70.61 109493 49 78069 31965 70.95 110034 50 79526 32790 70.81 112316 51 77571 32280 70.61 109851 52 76008 31563 70.66 107571 53 76505 31661 70.73 108166 54 77349 31698 70.93 109047 55 77543 31450 71.14 108993 56 77708 31690 71.03 109398 57 78790 31761 71.27 110551 58 77558 31339 71.22 108897 59 77501 31547 71.07 109048 60 77309 31572 71.00 108881 61 76250 31406 70.83 107656 62 76899 30826 71.38 107725 63 76195 30742 71.25 106937 64 76322 31335 70.89 107657 65 77171 31324 71.13 108495 66 77542 31679 71.00 109221 67 78812 31963 71.15 110775 68 76180 31673 70.63 107853 69 75954 31480 70.70 107434 70 75682 31324 70.73 107006 71 76181 30873 71.16 107054 72 75517 31061 70.86 106578 73 75802 30807 71.10 106609 74 75297 31224 70.69 106521 75 74966 31209 70.61 106175 76 74503 30556 70.92 105059 77 74690 31020 70.66 105710 78 74014 30710 70.68 104724 79 73603 31106 70.29 104709 80 73803 31339 70.19 105142 81 73838 30964 70.45 104802 82 73419 31113 70.24 104532 83 73655 31180 70.26 104835 84 72541 31537 69.70 104078 85 71258 30615 69.95 101873 86 71478 30592 70.03 102070 87 71793 30737 70.02 102530 88 71315 30895 69.77 102210 89 70814 30606 69.82 101420 90 70558 30879 69.56 101437 91 69638 30245 69.72 99883 92 68918 30321 69.45 99239 93 68928 30519 69.31 99447 94 67142 29827 69.24 96969 95 66030 30534 68.38 96564 96 65632 30686 68.14 96318 97 63887 30282 67.84 94169 98 57960 29006 66.65 86966 99 47754 26554 64.26 74308 100 13667 16711 44.99 30378 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53978 250027 17.76 304005 2 28588 85994 24.95 114582 3 30943 134095 18.75 165038 4 16379 167706 8.90 184085 5 10643 200920 5.03 211563 6 6362 223004 2.77 229366 7 5727 143370 3.84 149097 8 6584 139160 4.52 145744 9 5895 142645 3.97 148540 10 8132 142013 5.42 150145 11 13337 142750 8.54 156087 12 6323 150316 4.04 156639 13 6077 152741 3.83 158818 14 5265 153993 3.31 159258 15 6040 150552 3.86 156592 16 7228 153321 4.50 160549 17 5407 156717 3.34 162124 18 5555 167597 3.21 173152 19 5233 155756 3.25 160989 20 5097 157438 3.14 162535 21 5002 158717 3.06 163719 22 4635 160231 2.81 164866 23 4757 157827 2.93 162584 24 4645 158361 2.85 163006 25 4649 162823 2.78 167472 26 4540 161581 2.73 166121 27 4412 160785 2.67 165197 28 4610 165374 2.71 169984 29 4306 163451 2.57 167757 30 4279 164277 2.54 168556 31 4279 166074 2.51 170353 32 4100 163049 2.45 167149 33 3932 167578 2.29 171510 34 4193 168913 2.42 173106 35 3851 166456 2.26 170307 36 4070 166064 2.39 170134 37 3867 170236 2.22 174103 38 3953 168169 2.30 172122 39 4018 173460 2.26 177478 40 3859 168385 2.24 172244 41 3743 172922 2.12 176665 42 3617 173009 2.05 176626 43 3971 175369 2.21 179340 44 3734 170257 2.15 173991 45 3560 171883 2.03 175443 46 3414 172820 1.94 176234 47 3550 169866 2.05 173416 48 3383 171675 1.93 175058 49 3377 175366 1.89 178743 50 3282 174154 1.85 177436 51 3490 174592 1.96 178082 52 3339 175403 1.87 178742 53 3281 172067 1.87 175348 54 3267 171942 1.86 175209 55 3292 175625 1.84 178917 56 3229 172431 1.84 175660 57 3354 174095 1.89 177449 58 3231 172087 1.84 175318 59 3179 171370 1.82 174549 60 3176 170812 1.83 173988 61 3242 173288 1.84 176530 62 3113 171091 1.79 174204 63 3060 170832 1.76 173892 64 3111 171596 1.78 174707 65 3191 171595 1.83 174786 66 3341 170739 1.92 174080 67 3272 174055 1.85 177327 68 3284 170810 1.89 174094 69 3618 170991 2.07 174609 70 3136 172449 1.79 175585 71 3142 168092 1.83 171234 72 3347 168139 1.95 171486 73 3146 169522 1.82 172668 74 3136 168190 1.83 171326 75 3156 168331 1.84 171487 76 3110 168700 1.81 171810 77 3025 167781 1.77 170806 78 3180 167001 1.87 170181 79 3149 165967 1.86 169116 80 3064 165667 1.82 168731 81 3376 164318 2.01 167694 82 3063 164771 1.83 167834 83 3200 163952 1.91 167152 84 3383 162922 2.03 166305 85 3428 165153 2.03 168581 86 3370 162114 2.04 165484 87 3281 161562 1.99 164843 88 3303 162667 1.99 165970 89 3280 160987 2.00 164267 90 3226 159667 1.98 162893 91 3206 159096 1.98 162302 92 3408 158413 2.11 161821 93 3550 158772 2.19 162322 94 3663 162072 2.21 165735 95 3582 155958 2.25 159540 96 3713 155209 2.34 158922 97 3949 155684 2.47 159633 98 4232 151967 2.71 156199 99 3953 149730 2.57 153683 100 1937 122360 1.56 124297 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 120690 217984 35.64 338674 2 120634 278925 30.19 399559 3 94825 263973 26.43 358798 4 64954 318816 16.93 383770 5 43733 398087 9.90 441820 6 37868 461863 7.58 499731 7 34940 533480 6.15 568420 8 39032 529144 6.87 568176 9 29137 499672 5.51 528809 10 30182 490924 5.79 521106 11 32919 477457 6.45 510376 12 29222 477976 5.76 507198 13 30346 501327 5.71 531673 14 29020 501278 5.47 530298 15 30886 497744 5.84 528630 16 33519 476391 6.57 509910 17 28745 484635 5.60 513380 18 28312 484703 5.52 513015 19 30440 497028 5.77 527468 20 28700 503525 5.39 532225 21 27654 487997 5.36 515651 22 27823 488479 5.39 516302 23 27422 493360 5.27 520782 24 24926 497712 4.77 522638 25 26899 504663 5.06 531562 26 25939 510692 4.83 536631 27 24687 511460 4.60 536147 28 24867 520110 4.56 544977 29 24319 520918 4.46 545237 30 23184 522818 4.25 546002 31 24914 524057 4.54 548971 32 23403 519723 4.31 543126 33 22899 527016 4.16 549915 34 23338 525743 4.25 549081 35 22897 527111 4.16 550008 36 21778 529130 3.95 550908 37 22175 529268 4.02 551443 38 21550 531563 3.90 553113 39 21293 529590 3.87 550883 40 20645 529132 3.76 549777 41 20531 550236 3.60 570767 42 18940 534188 3.42 553128 43 20133 532012 3.65 552145 44 20216 538328 3.62 558544 45 18299 541459 3.27 559758 46 18191 542062 3.25 560253 47 18754 543709 3.33 562463 48 17363 540749 3.11 558112 49 17263 545056 3.07 562319 50 17261 549423 3.05 566684 51 16971 549687 2.99 566658 52 16527 544110 2.95 560637 53 16579 546040 2.95 562619 54 15556 537597 2.81 553153 55 16117 536323 2.92 552440 56 16108 544893 2.87 561001 57 15880 542232 2.85 558112 58 15891 551246 2.80 567137 59 15740 552919 2.77 568659 60 14971 536276 2.72 551247 61 15085 531749 2.76 546834 62 15137 544114 2.71 559251 63 14525 527141 2.68 541666 64 14336 524323 2.66 538659 65 15147 525922 2.80 541069 66 13972 526363 2.59 540335 67 13907 532031 2.55 545938 68 14399 522610 2.68 537009 69 14856 528315 2.74 543171 70 13669 521951 2.55 535620 71 14032 518219 2.64 532251 72 13929 517786 2.62 531715 73 13607 519702 2.55 533309 74 13623 526965 2.52 540588 75 13786 516038 2.60 529824 76 13624 512198 2.59 525822 77 13879 515252 2.62 529131 78 13701 524405 2.55 538106 79 13226 519468 2.48 532694 80 13820 512409 2.63 526229 81 13946 509150 2.67 523096 82 13112 512497 2.49 525609 83 13473 501268 2.62 514741 84 13041 497664 2.55 510705 85 13616 494129 2.68 507745 86 13410 496178 2.63 509588 87 12928 492946 2.56 505874 88 13270 496778 2.60 510048 89 13649 494617 2.69 508266 90 13222 484119 2.66 497341 91 13217 483307 2.66 496524 92 13231 481191 2.68 494422 93 13530 477673 2.75 491203 94 13729 476701 2.80 490430 95 14396 478860 2.92 493256 96 14443 480769 2.92 495212 97 14750 477740 2.99 492490 98 14776 466589 3.07 481365 99 12931 456607 2.75 469538 100 6737 388225 1.71 394962 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57903 39074 59.71 96977 2 77389 46135 62.65 123524 3 75133 51365 59.39 126498 4 52804 50451 51.14 103255 5 45512 42322 51.82 87834 6 33715 31052 52.06 64767 7 35843 27637 56.46 63480 8 40881 28297 59.10 69178 9 43798 28794 60.33 72592 10 44498 26736 62.47 71234 11 51024 26769 65.59 77793 12 60066 26916 69.06 86982 13 57024 26126 68.58 83150 14 48636 25764 65.37 74400 15 48195 25762 65.17 73957 16 48470 25666 65.38 74136 17 52304 28928 64.39 81232 18 49520 25110 66.35 74630 19 48362 24057 66.78 72419 20 48802 24216 66.84 73018 21 49068 24642 66.57 73710 22 47318 23846 66.49 71164 23 46540 22537 67.37 69077 24 46181 22974 66.78 69155 25 46536 22246 67.66 68782 26 45157 21538 67.71 66695 27 44139 21672 67.07 65811 28 43833 20683 67.94 64516 29 42951 20077 68.15 63028 30 42526 20035 67.98 62561 31 41799 19521 68.17 61320 32 40752 19117 68.07 59869 33 40004 19042 67.75 59046 34 40175 18506 68.46 58681 35 39730 18806 67.87 58536 36 38659 18236 67.95 56895 37 37745 17245 68.64 54990 38 37658 17222 68.62 54880 39 37056 16880 68.70 53936 40 35909 16224 68.88 52133 41 36262 16191 69.13 52453 42 35586 16054 68.91 51640 43 34721 15533 69.09 50254 44 34956 15228 69.66 50184 45 33465 14676 69.51 48141 46 32803 14479 69.38 47282 47 32448 13881 70.04 46329 48 32163 13864 69.88 46027 49 31897 13764 69.86 45661 50 31430 13655 69.71 45085 51 30055 12875 70.01 42930 52 28922 12839 69.26 41761 53 28210 12319 69.60 40529 54 28047 12098 69.86 40145 55 27836 11884 70.08 39720 56 26998 11817 69.56 38815 57 27138 11679 69.91 38817 58 26003 11195 69.90 37198 59 25314 11028 69.65 36342 60 24934 10752 69.87 35686 61 23724 10304 69.72 34028 62 23696 10269 69.77 33965 63 22684 9875 69.67 32559 64 22436 10018 69.13 32454 65 22207 9700 69.60 31907 66 22203 9707 69.58 31910 67 21991 9579 69.66 31570 68 20492 9129 69.18 29621 69 20089 9052 68.94 29141 70 19766 8660 69.53 28426 71 19172 8461 69.38 27633 72 18700 8418 68.96 27118 73 18426 8183 69.25 26609 74 17969 7858 69.57 25827 75 17076 7755 68.77 24831 76 16949 7583 69.09 24532 77 16409 7334 69.11 23743 78 16028 7350 68.56 23378 79 15568 7094 68.70 22662 80 15503 7086 68.63 22589 81 14837 6675 68.97 21512 82 14557 6770 68.26 21327 83 14324 6409 69.09 20733 84 13636 6281 68.46 19917 85 13009 6047 68.27 19056 86 12764 5856 68.55 18620 87 12581 5854 68.25 18435 88 12462 5811 68.20 18273 89 11803 5515 68.15 17318 90 11580 5457 67.97 17037 91 11144 5019 68.95 16163 92 10607 5043 67.78 15650 93 10659 5057 67.82 15716 94 9998 4739 67.84 14737 95 9771 4560 68.18 14331 96 9384 4579 67.21 13963 97 8959 4231 67.92 13190 98 7886 3876 67.05 11762 99 6061 3579 62.87 9640 100 1751 2035 46.25 3786 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 49358 251886 16.38 301244 2 25044 87930 22.17 112974 3 27735 119530 18.83 147265 4 15068 150726 9.09 165794 5 12135 180630 6.30 192765 6 5982 194709 2.98 200691 7 5540 126359 4.20 131899 8 6064 119709 4.82 125773 9 5453 122034 4.28 127487 10 7998 119286 6.28 127284 11 14558 116121 11.14 130679 12 5806 121031 4.58 126837 13 5738 122510 4.47 128248 14 4369 124559 3.39 128928 15 5381 115951 4.43 121332 16 7329 115622 5.96 122951 17 4283 118263 3.50 122546 18 4897 125962 3.74 130859 19 4268 112565 3.65 116833 20 4069 111062 3.53 115131 21 3910 110727 3.41 114637 22 3594 110185 3.16 113779 23 3533 107498 3.18 111031 24 3382 104284 3.14 107666 25 3331 106440 3.03 109771 26 3226 104108 3.01 107334 27 3284 100601 3.16 103885 28 3296 101871 3.13 105167 29 2864 99369 2.80 102233 30 2856 97753 2.84 100609 31 2725 96554 2.74 99279 32 2554 93604 2.66 96158 33 2508 94631 2.58 97139 34 2400 93083 2.51 95483 35 2417 89901 2.62 92318 36 2369 88543 2.61 90912 37 2366 88959 2.59 91325 38 2426 85975 2.74 88401 39 2307 87850 2.56 90157 40 2246 83121 2.63 85367 41 2147 83439 2.51 85586 42 1988 81944 2.37 83932 43 2110 81629 2.52 83739 44 1801 77144 2.28 78945 45 1827 76791 2.32 78618 46 1710 75362 2.22 77072 47 1803 72336 2.43 74139 48 1634 72677 2.20 74311 49 1471 71965 2.00 73436 50 1542 70433 2.14 71975 51 1602 69557 2.25 71159 52 1444 67781 2.09 69225 53 1438 66368 2.12 67806 54 1378 64267 2.10 65645 55 1292 63445 2.00 64737 56 1288 62082 2.03 63370 57 1313 61269 2.10 62582 58 1234 58649 2.06 59883 59 1231 57677 2.09 58908 60 1129 56296 1.97 57425 61 1137 55913 1.99 57050 62 1109 53781 2.02 54890 63 1097 53098 2.02 54195 64 1097 52071 2.06 53168 65 1100 51082 2.11 52182 66 1126 49295 2.23 50421 67 1183 49761 2.32 50944 68 1114 47881 2.27 48995 69 1104 46668 2.31 47772 70 1009 46101 2.14 47110 71 1053 43365 2.37 44418 72 903 43411 2.04 44314 73 976 42379 2.25 43355 74 940 41174 2.23 42114 75 914 40454 2.21 41368 76 842 39641 2.08 40483 77 813 38091 2.09 38904 78 823 37283 2.16 38106 79 812 36392 2.18 37204 80 823 35247 2.28 36070 81 848 34140 2.42 34988 82 773 33442 2.26 34215 83 728 33091 2.15 33819 84 803 31910 2.45 32713 85 691 31267 2.16 31958 86 658 29893 2.15 30551 87 683 29547 2.26 30230 88 700 29157 2.34 29857 89 653 27770 2.30 28423 90 643 27212 2.31 27855 91 635 26900 2.31 27535 92 649 25858 2.45 26507 93 593 25657 2.26 26250 94 572 26225 2.13 26797 95 549 23447 2.29 23996 96 637 22504 2.75 23141 97 606 22031 2.68 22637 98 543 20940 2.53 21483 99 453 19837 2.23 20290 100 160 15161 1.04 15321 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 105342 223316 32.05 328658 2 105814 284848 27.09 390662 3 84847 266324 24.16 351171 4 60067 306671 16.38 366738 5 44818 369279 10.82 414097 6 38219 418899 8.36 457118 7 32653 475226 6.43 507879 8 38350 463180 7.65 501530 9 25955 435538 5.62 461493 10 26902 421149 6.00 448051 11 29859 399240 6.96 429099 12 26656 391318 6.38 417974 13 25962 404882 6.03 430844 14 24902 398839 5.88 423741 15 27195 394093 6.46 421288 16 32243 366988 8.08 399231 17 24078 370367 6.10 394445 18 24348 365427 6.25 389775 19 26412 370500 6.65 396912 20 23856 367766 6.09 391622 21 22972 350525 6.15 373497 22 22458 345661 6.10 368119 23 21340 344474 5.83 365814 24 19443 342228 5.38 361671 25 21127 341575 5.82 362702 26 19563 339860 5.44 359423 27 18906 333416 5.37 352322 28 19091 335199 5.39 354290 29 17876 329407 5.15 347283 30 17300 325162 5.05 342462 31 18522 322455 5.43 340977 32 16926 311417 5.15 328343 33 16590 310398 5.07 326988 34 16162 304577 5.04 320739 35 15926 299714 5.05 315640 36 14932 296921 4.79 311853 37 15319 290864 5.00 306183 38 14081 286729 4.68 300810 39 14069 281479 4.76 295548 40 13646 276992 4.70 290638 41 13465 283718 4.53 297183 42 11963 269601 4.25 281564 43 12544 264043 4.54 276587 44 11804 261635 4.32 273439 45 10986 258969 4.07 269955 46 10833 254557 4.08 265390 47 10792 249867 4.14 260659 48 10094 243558 3.98 253652 49 9823 241094 3.91 250917 50 9653 238331 3.89 247984 51 9162 235185 3.75 244347 52 8772 227034 3.72 235806 53 8572 224790 3.67 233362 54 7904 216857 3.52 224761 55 7963 210903 3.64 218866 56 7968 210512 3.65 218480 57 7702 206541 3.59 214243 58 7753 207043 3.61 214796 59 7186 204305 3.40 211491 60 6902 191958 3.47 198860 61 6514 186227 3.38 192741 62 6578 188396 3.37 194974 63 6212 176826 3.39 183038 64 5815 171539 3.28 177354 65 6128 169269 3.49 175397 66 5513 166697 3.20 172210 67 5770 164797 3.38 170567 68 5489 157409 3.37 162898 69 5378 157850 3.29 163228 70 4949 151459 3.16 156408 71 5210 145566 3.46 150776 72 4688 144106 3.15 148794 73 4660 142251 3.17 146911 74 4554 141476 3.12 146030 75 4596 134605 3.30 139201 76 4435 130230 3.29 134665 77 4405 129367 3.29 133772 78 4318 130844 3.19 135162 79 4019 125889 3.09 129908 80 4003 121125 3.20 125128 81 3925 117886 3.22 121811 82 3692 117072 3.06 120764 83 3699 110409 3.24 114108 84 3402 105875 3.11 109277 85 3206 103340 3.01 106546 86 3255 101617 3.10 104872 87 3068 98904 3.01 101972 88 3130 97816 3.10 100946 89 3067 95746 3.10 98813 90 2807 90470 3.01 93277 91 2821 87813 3.11 90634 92 2690 84872 3.07 87562 93 2526 82550 2.97 85076 94 2574 80820 3.09 83394 95 2600 79379 3.17 81979 96 2342 78507 2.90 80849 97 2238 76451 2.84 78689 98 2052 71865 2.78 73917 99 1649 69914 2.30 71563 100 709 54716 1.28 55425