/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_1_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_1_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
28982766
Paired-end alignments with a unique best hit
4521752
Pairs without alignments under any condition
23239578
Pairs that did not map uniquely
1221436
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
163653583
Methylated C's in CpG context
14475033
Methylated C's in CHG context
1101550
Methylated C's in CHH context
4900521
Methylated C's in Unknown context
581418
Unmethylated C's in CpG context
6611427
Unmethylated C's in CHG context
33757094
Unmethylated C's in CHH context
102807958
Unmethylated C's in Unknown context
2347522
Percentage methylation (CpG context)
68.6%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
4.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1135164
original top strand
CTOT
1123470
complementary to original top strand
CTOB
1130861
complementary to original bottom strand
OB
1132256
original bottom strand
Deduplication
Alignments analysed
4521751
Unique alignments
4407890
Duplicates removed
113861
Duplicated alignments were found at 87450 different positions
