zr2096_10_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6098678 lines in total Total number of methylation call strings processed: 12197356 Final Cytosine Methylation Report ================================= Total number of C's analysed: 161979006 Total methylated C's in CpG context: 15010256 Total methylated C's in CHG context: 1253545 Total methylated C's in CHH context: 4613320 Total C to T conversions in CpG context: 7412133 Total C to T conversions in CHG context: 34551003 Total C to T conversions in CHH context: 99138749 C methylated in CpG context: 66.9% C methylated in CHG context: 3.5% C methylated in CHH context: 4.4%