CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 108155 56474 65.70 164629 2 140870 71431 66.35 212301 3 138983 78503 63.90 217486 4 98714 72202 57.76 170916 5 81210 73000 52.66 154210 6 60277 51275 54.03 111552 7 66272 47954 58.02 114226 8 74416 49915 59.85 124331 9 79357 50821 60.96 130178 10 82154 48122 63.06 130276 11 91821 49298 65.07 141119 12 102713 50880 66.87 153593 13 99531 50602 66.30 150133 14 96186 49192 66.16 145378 15 96199 49932 65.83 146131 16 98103 50652 65.95 148755 17 102287 57834 63.88 160121 18 101816 51036 66.61 152852 19 99530 49788 66.66 149318 20 103651 50997 67.02 154648 21 105131 52012 66.90 157143 22 104081 49976 67.56 154057 23 104995 50405 67.56 155400 24 107675 52316 67.30 159991 25 108983 51229 68.02 160212 26 108323 51004 67.99 159327 27 108905 51767 67.78 160672 28 108095 51085 67.91 159180 29 108439 50176 68.37 158615 30 107538 50453 68.07 157991 31 108749 50165 68.43 158914 32 109575 50248 68.56 159823 33 110366 50477 68.62 160843 34 111315 49910 69.04 161225 35 111887 50692 68.82 162579 36 111944 51244 68.60 163188 37 110144 50001 68.78 160145 38 112666 50449 69.07 163115 39 112185 50292 69.05 162477 40 111917 49562 69.31 161479 41 114098 50911 69.15 165009 42 114411 50613 69.33 165024 43 114671 50179 69.56 164850 44 117316 51108 69.66 168424 45 115728 50429 69.65 166157 46 115038 49743 69.81 164781 47 115369 49869 69.82 165238 48 116629 50693 69.70 167322 49 117422 50439 69.95 167861 50 119657 51900 69.75 171557 51 116270 50704 69.63 166974 52 114351 49306 69.87 163657 53 116450 49818 70.04 166268 54 116141 50380 69.75 166521 55 115965 49981 69.88 165946 56 116386 50248 69.85 166634 57 117201 51310 69.55 168511 58 116575 49908 70.02 166483 59 116603 50081 69.95 166684 60 115535 50027 69.78 165562 61 113869 49331 69.77 163200 62 114635 49355 69.90 163990 63 116023 49586 70.06 165609 64 114914 50259 69.57 165173 65 116201 49984 69.92 166185 66 116753 51057 69.57 167810 67 116805 51178 69.53 167983 68 115537 50517 69.58 166054 69 114211 50098 69.51 164309 70 113465 49946 69.44 163411 71 114518 49852 69.67 164370 72 113320 49424 69.63 162744 73 112749 49450 69.51 162199 74 112859 49491 69.52 162350 75 111838 49484 69.33 161322 76 111345 49123 69.39 160468 77 111910 49223 69.45 161133 78 111409 49495 69.24 160904 79 109793 49334 69.00 159127 80 110650 50194 68.79 160844 81 110326 50055 68.79 160381 82 108382 49916 68.47 158298 83 108788 49972 68.52 158760 84 108649 50064 68.46 158713 85 106891 49192 68.48 156083 86 106157 49133 68.36 155290 87 106195 49732 68.11 155927 88 106248 49745 68.11 155993 89 105581 49241 68.20 154822 90 104025 49478 67.77 153503 91 103574 48847 67.95 152421 92 101684 48671 67.63 150355 93 101113 49304 67.22 150417 94 99290 47984 67.42 147274 95 97769 48509 66.84 146278 96 95920 48736 66.31 144656 97 93505 47941 66.11 141446 98 84372 44992 65.22 129364 99 67715 40824 62.39 108539 100 18141 24532 42.51 42673 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 77547 359547 17.74 437094 2 38136 128144 22.93 166280 3 37269 193416 16.16 230685 4 23378 230481 9.21 253859 5 12518 294639 4.08 307157 6 9584 331023 2.81 340607 7 8864 211660 4.02 220524 8 9080 204593 4.25 213673 9 8760 210122 4.00 218882 10 10663 211370 4.80 222033 11 14388 211690 6.36 226078 12 9041 220832 3.93 229873 13 9005 227129 3.81 236134 14 8407 226565 3.58 234972 15 9243 222898 3.98 232141 16 9760 227178 4.12 236938 17 8349 232608 3.46 240957 18 8361 242158 3.34 250519 19 7844 231296 3.28 239140 20 8065 231026 3.37 239091 21 8001 232613 3.33 240614 22 7474 233934 3.10 241408 23 7670 231048 3.21 238718 24 7456 231393 3.12 238849 25 7510 240894 3.02 248404 26 7269 240132 2.94 247401 27 7059 236065 2.90 243124 28 6849 243011 2.74 249860 29 6840 241873 2.75 248713 30 6678 241605 2.69 248283 31 6655 244514 2.65 251169 32 6469 239960 2.63 246429 33 6617 246139 2.62 252756 34 6245 248376 2.45 254621 35 6352 244915 2.53 251267 36 6379 244219 2.55 250598 37 6348 251829 2.46 258177 38 6147 248242 2.42 254389 39 6246 255401 2.39 261647 40 5972 247797 2.35 253769 41 5839 254196 2.25 260035 42 5905 252667 2.28 258572 43 5994 257597 2.27 263591 44 5660 252473 2.19 258133 45 5816 251876 2.26 257692 46 5553 252855 2.15 258408 47 5527 248874 2.17 254401 48 5688 251649 2.21 257337 49 5536 256648 2.11 262184 50 5678 255553 2.17 261231 51 5661 255231 2.17 260892 52 5470 257529 2.08 262999 53 5443 254694 2.09 260137 54 5588 251298 2.18 256886 55 5430 257346 2.07 262776 56 5331 252850 2.06 258181 57 5521 255085 2.12 260606 58 5308 253355 2.05 258663 59 5372 253491 2.08 258863 60 5988 249665 2.34 255653 61 5276 255243 2.03 260519 62 5481 251194 2.14 256675 63 5430 250427 2.12 255857 64 5240 252220 2.04 257460 65 5199 251801 2.02 257000 66 5334 250619 2.08 255953 67 5368 256447 2.05 261815 68 5253 249896 2.06 255149 69 5335 250229 2.09 255564 70 5277 252649 2.05 257926 71 5349 247650 2.11 252999 72 5156 246809 2.05 251965 73 5163 249523 2.03 254686 74 5223 248118 2.06 253341 75 5238 247041 2.08 252279 76 5226 246832 2.07 252058 77 5255 245042 2.10 250297 78 5163 244193 2.07 249356 79 5184 245318 2.07 250502 80 5337 242696 2.15 248033 81 5359 242432 2.16 247791 82 5296 244529 2.12 249825 83 5305 241240 2.15 246545 84 5317 238671 2.18 243988 85 5338 242425 2.15 247763 86 5164 239347 2.11 244511 87 5349 237438 2.20 242787 88 5416 238315 2.22 243731 89 5455 236107 2.26 241562 90 5490 234504 2.29 239994 91 5448 234103 2.27 239551 92 5587 233089 2.34 238676 93 5765 231503 2.43 237268 94 5862 235353 2.43 241215 95 5832 229236 2.48 235068 96 6034 227056 2.59 233090 97 6259 227562 2.68 233821 98 6508 221071 2.86 227579 99 6036 214857 2.73 220893 100 3315 174623 1.86 177938 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 155690 306593 33.68 462283 2 152542 394170 27.90 546712 3 120624 372025 24.48 492649 4 90205 430635 17.32 520840 5 49613 566629 8.05 616242 6 43756 655745 6.26 699501 7 43742 751510 5.50 795252 8 45023 749885 5.66 794908 9 38174 696853 5.19 735027 10 37734 689507 5.19 727241 11 40020 680933 5.55 720953 12 36852 674705 5.18 711557 13 36535 698190 4.97 734725 14 36047 698425 4.91 734472 15 37983 687860 5.23 725843 16 38451 665486 5.46 703937 17 34900 673692 4.93 708592 18 33553 670360 4.77 703913 19 35485 688421 4.90 723906 20 34170 696612 4.68 730782 21 33132 675096 4.68 708228 22 31801 670864 4.53 702665 23 32386 679378 4.55 711764 24 30443 678124 4.30 708567 25 31449 689263 4.36 720712 26 29960 699442 4.11 729402 27 30066 692004 4.16 722070 28 28963 704836 3.95 733799 29 29181 709974 3.95 739155 30 27726 707257 3.77 734983 31 29087 714960 3.91 744047 32 27571 706446 3.76 734017 33 27293 714785 3.68 742078 34 26750 716170 3.60 742920 35 27413 716162 3.69 743575 36 25788 716429 3.47 742217 37 25628 720599 3.43 746227 38 25064 722847 3.35 747911 39 24966 714943 3.37 739909 40 24003 721223 3.22 745226 41 24739 744837 3.21 769576 42 23359 724817 3.12 748176 43 23769 726399 3.17 750168 44 23009 734078 3.04 757087 45 23023 735343 3.04 758366 46 22252 736882 2.93 759134 47 22190 742898 2.90 765088 48 21562 735560 2.85 757122 49 21429 737898 2.82 759327 50 21440 745422 2.80 766862 51 20776 742790 2.72 763566 52 20760 740004 2.73 760764 53 20345 744006 2.66 764351 54 19824 731848 2.64 751672 55 19902 729299 2.66 749201 56 19705 742791 2.58 762496 57 19768 739466 2.60 759234 58 19404 748293 2.53 767697 59 19635 754663 2.54 774298 60 20568 725009 2.76 745577 61 19049 729810 2.54 748859 62 19652 740549 2.59 760201 63 18816 719741 2.55 738557 64 18411 714482 2.51 732893 65 18654 720696 2.52 739350 66 18341 718028 2.49 736369 67 18657 726399 2.50 745056 68 18142 717761 2.47 735903 69 18366 723280 2.48 741646 70 18290 715973 2.49 734263 71 17909 712650 2.45 730559 72 17760 708694 2.44 726454 73 18205 713021 2.49 731226 74 17963 723179 2.42 741142 75 17593 708997 2.42 726590 76 17524 703287 2.43 720811 77 17530 709751 2.41 727281 78 17697 718098 2.41 735795 79 17812 710183 2.45 727995 80 17293 701970 2.40 719263 81 17621 699685 2.46 717306 82 17681 701477 2.46 719158 83 17539 692661 2.47 710200 84 17365 685870 2.47 703235 85 17477 683833 2.49 701310 86 17645 686226 2.51 703871 87 17851 680705 2.56 698556 88 17960 684973 2.56 702933 89 18676 683772 2.66 702448 90 17957 673331 2.60 691288 91 18194 669948 2.64 688142 92 18557 668660 2.70 687217 93 18839 662111 2.77 680950 94 19154 665532 2.80 684686 95 19696 665172 2.88 684868 96 20169 665835 2.94 686004 97 21077 659156 3.10 680233 98 20944 647106 3.14 668050 99 18391 628995 2.84 647386 100 10157 511589 1.95 521746 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 94313 56673 62.46 150986 2 121623 67349 64.36 188972 3 121399 72403 62.64 193802 4 84622 64606 56.71 149228 5 69487 66548 51.08 136035 6 51776 46443 52.71 98219 7 54221 42969 55.79 97190 8 62188 44028 58.55 106216 9 63825 43306 59.58 107131 10 65813 40996 61.62 106809 11 73248 41179 64.01 114427 12 81277 42063 65.90 123340 13 79323 40835 66.02 120158 14 72951 39306 64.99 112257 15 72148 38485 65.21 110633 16 72883 39143 65.06 112026 17 74530 44460 62.64 118990 18 72351 37837 65.66 110188 19 69821 36335 65.77 106156 20 71184 36448 66.14 107632 21 71295 36226 66.31 107521 22 67623 34739 66.06 102362 23 68485 33637 67.06 102122 24 68256 34178 66.63 102434 25 68488 33419 67.21 101907 26 66459 32270 67.31 98729 27 64820 32352 66.71 97172 28 63264 31105 67.04 94369 29 62634 29982 67.63 92616 30 60303 30112 66.70 90415 31 59992 29034 67.39 89026 32 58662 28411 67.37 87073 33 57824 28208 67.21 86032 34 57682 27279 67.89 84961 35 56852 27219 67.62 84071 36 54711 26707 67.20 81418 37 53092 25408 67.63 78500 38 53886 25362 68.00 79248 39 51995 24949 67.58 76944 40 50658 23860 67.98 74518 41 50643 24399 67.49 75042 42 49489 23537 67.77 73026 43 48691 22746 68.16 71437 44 48823 22985 67.99 71808 45 46877 22213 67.85 69090 46 45907 21080 68.53 66987 47 44780 20759 68.33 65539 48 44333 20814 68.05 65147 49 44161 20464 68.33 64625 50 44231 20121 68.73 64352 51 41255 19500 67.90 60755 52 39415 18830 67.67 58245 53 39352 18264 68.30 57616 54 38666 18066 68.16 56732 55 37450 17866 67.70 55316 56 36890 17849 67.39 54739 57 36488 17753 67.27 54241 58 35362 16648 67.99 52010 59 34184 16295 67.72 50479 60 33392 16105 67.46 49497 61 32083 15279 67.74 47362 62 31551 15231 67.44 46782 63 30866 14967 67.34 45833 64 30089 14551 67.40 44640 65 29906 14304 67.65 44210 66 29263 14515 66.84 43778 67 29056 14246 67.10 43302 68 27484 13706 66.72 41190 69 26629 13291 66.71 39920 70 25874 12727 67.03 38601 71 25275 12465 66.97 37740 72 24719 12266 66.84 36985 73 24267 11855 67.18 36122 74 23853 11564 67.35 35417 75 22452 11325 66.47 33777 76 21878 11174 66.19 33052 77 21321 10836 66.30 32157 78 20388 10627 65.74 31015 79 20192 10442 65.91 30634 80 19565 10184 65.77 29749 81 19428 9976 66.07 29404 82 18511 9785 65.42 28296 83 17892 9692 64.86 27584 84 17494 9436 64.96 26930 85 16567 8816 65.27 25383 86 16228 8494 65.64 24722 87 15744 8245 65.63 23989 88 15249 8681 63.72 23930 89 15195 7991 65.54 23186 90 14537 7867 64.89 22404 91 14015 7460 65.26 21475 92 13314 7200 64.90 20514 93 13226 7385 64.17 20611 94 12464 6818 64.64 19282 95 12034 6572 64.68 18606 96 11700 6320 64.93 18020 97 10786 6102 63.87 16888 98 9402 5540 62.92 14942 99 7325 4912 59.86 12237 100 1978 2856 40.92 4834 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70832 382143 15.64 452975 2 32389 128413 20.14 160802 3 31668 171758 15.57 203426 4 20313 207501 8.92 227814 5 11958 268261 4.27 280219 6 8717 293241 2.89 301958 7 7893 189192 4.00 197085 8 7834 176213 4.26 184047 9 7744 179494 4.14 187238 10 9415 176148 5.07 185563 11 13334 171699 7.21 185033 12 7748 175055 4.24 182803 13 7732 181057 4.10 188789 14 6624 176407 3.62 183031 15 7731 168821 4.38 176552 16 8615 168362 4.87 176977 17 6196 171153 3.49 177349 18 6525 176232 3.57 182757 19 6144 161641 3.66 167785 20 5975 159657 3.61 165632 21 5680 158515 3.46 164195 22 5323 155438 3.31 160761 23 5194 150067 3.35 155261 24 4845 147318 3.18 152163 25 4929 152675 3.13 157604 26 4946 148173 3.23 153119 27 4546 142600 3.09 147146 28 4479 143621 3.02 148100 29 4301 140980 2.96 145281 30 4091 137062 2.90 141153 31 3955 135788 2.83 139743 32 3867 131192 2.86 135059 33 3852 132704 2.82 136556 34 3722 129880 2.79 133602 35 3563 125153 2.77 128716 36 3455 123005 2.73 126460 37 3422 124376 2.68 127798 38 3286 119694 2.67 122980 39 3297 122586 2.62 125883 40 2998 114925 2.54 117923 41 2945 115494 2.49 118439 42 2878 112483 2.49 115361 43 2824 113090 2.44 115914 44 2642 106793 2.41 109435 45 2562 105259 2.38 107821 46 2395 102555 2.28 104950 47 2511 99675 2.46 102186 48 2400 98502 2.38 100902 49 2357 98177 2.34 100534 50 2218 95544 2.27 97762 51 2411 94406 2.49 96817 52 2144 92248 2.27 94392 53 2091 90090 2.27 92181 54 2102 85915 2.39 88017 55 2004 86093 2.27 88097 56 1916 83557 2.24 85473 57 1978 83167 2.32 85145 58 1869 79387 2.30 81256 59 1830 77351 2.31 79181 60 1727 75124 2.25 76851 61 1703 74596 2.23 76299 62 1563 72305 2.12 73868 63 1710 70261 2.38 71971 64 1596 68545 2.28 70141 65 1576 67260 2.29 68836 66 1630 65809 2.42 67439 67 1594 66238 2.35 67832 68 1479 63071 2.29 64550 69 1447 61527 2.30 62974 70 1440 60326 2.33 61766 71 1451 57720 2.45 59171 72 1368 56151 2.38 57519 73 1259 55429 2.22 56688 74 1322 53963 2.39 55285 75 1285 52749 2.38 54034 76 1191 50935 2.28 52126 77 1239 49269 2.45 50508 78 1254 48257 2.53 49511 79 1202 46532 2.52 47734 80 1177 45998 2.49 47175 81 1123 44324 2.47 45447 82 1078 43113 2.44 44191 83 1113 42232 2.57 43345 84 1070 40811 2.55 41881 85 998 40547 2.40 41545 86 1051 38307 2.67 39358 87 1007 37826 2.59 38833 88 950 36823 2.52 37773 89 899 35263 2.49 36162 90 910 34353 2.58 35263 91 868 33508 2.53 34376 92 845 32238 2.55 33083 93 872 31357 2.71 32229 94 850 31736 2.61 32586 95 883 29239 2.93 30122 96 793 27988 2.76 28781 97 781 27072 2.80 27853 98 721 25914 2.71 26635 99 604 24429 2.41 25033 100 273 19197 1.40 19470 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 128919 304712 29.73 433631 2 131089 397700 24.79 528789 3 104335 367776 22.10 472111 4 80513 406104 16.55 486617 5 47064 518244 8.33 565308 6 40899 585412 6.53 626311 7 39417 663456 5.61 702873 8 40778 648957 5.91 689735 9 33227 593974 5.30 627201 10 32407 583566 5.26 615973 11 35191 559776 5.91 594967 12 31967 544072 5.55 576039 13 31243 552961 5.35 584204 14 29994 544924 5.22 574918 15 32423 530268 5.76 562691 16 33106 503065 6.17 536171 17 27939 502210 5.27 530149 18 26464 493025 5.09 519489 19 28058 500580 5.31 528638 20 26143 496306 5.00 522449 21 25449 470465 5.13 495914 22 23916 459413 4.95 483329 23 24471 455082 5.10 479553 24 22150 447070 4.72 469220 25 22605 446470 4.82 469075 26 21396 445123 4.59 466519 27 21083 430592 4.67 451675 28 20127 433201 4.44 453328 29 20275 425128 4.55 445403 30 18813 418082 4.31 436895 31 19241 415215 4.43 434456 32 18052 400551 4.31 418603 33 17485 397770 4.21 415255 34 16863 389398 4.15 406261 35 17018 382879 4.26 399897 36 15793 376244 4.03 392037 37 15791 372042 4.07 387833 38 15083 365107 3.97 380190 39 14997 355650 4.05 370647 40 14186 351903 3.88 366089 41 14226 358979 3.81 373205 42 13047 340247 3.69 353294 43 13033 334361 3.75 347394 44 12238 329341 3.58 341579 45 12283 324071 3.65 336354 46 11668 319101 3.53 330769 47 11181 315476 3.42 326657 48 10639 305925 3.36 316564 49 10411 300316 3.35 310727 50 10250 298264 3.32 308514 51 9793 292526 3.24 302319 52 9389 283567 3.20 292956 53 9383 279463 3.25 288846 54 8757 267364 3.17 276121 55 8706 259519 3.25 268225 56 8473 261278 3.14 269751 57 8132 255724 3.08 263856 58 7968 256416 3.01 264384 59 7783 252771 2.99 260554 60 7230 235024 2.98 242254 61 7281 230180 3.07 237461 62 7222 232399 3.01 239621 63 6918 216757 3.09 223675 64 6562 210079 3.03 216641 65 6630 208163 3.09 214793 66 6084 203666 2.90 209750 67 6411 203098 3.06 209509 68 5858 192113 2.96 197971 69 5919 192181 2.99 198100 70 5567 183964 2.94 189531 71 5506 178539 2.99 184045 72 5255 174121 2.93 179376 73 5360 171227 3.04 176587 74 5226 171862 2.95 177088 75 5133 161460 3.08 166593 76 4738 156153 2.94 160891 77 4816 155523 3.00 160339 78 4787 157707 2.95 162494 79 5024 151384 3.21 156408 80 4356 144599 2.92 148955 81 4253 140748 2.93 145001 82 4264 138092 3.00 142356 83 4061 131021 3.01 135082 84 3943 125435 3.05 129378 85 3864 122734 3.05 126598 86 3804 120113 3.07 123917 87 3659 116626 3.04 120285 88 3632 115592 3.05 119224 89 3491 111645 3.03 115136 90 3293 104360 3.06 107653 91 3235 101435 3.09 104670 92 3102 98232 3.06 101334 93 3024 95307 3.08 98331 94 3015 92947 3.14 95962 95 2895 91213 3.08 94108 96 2763 89564 2.99 92327 97 2666 86727 2.98 89393 98 2416 82228 2.85 84644 99 1953 78593 2.42 80546 100 932 62229 1.48 63161