/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_10_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_10_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
17717127
Paired-end alignments with a unique best hit
6293704
Pairs without alignments under any condition
9714892
Pairs that did not map uniquely
1708531
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
232453732
Methylated C's in CpG context
22151409
Methylated C's in CHG context
1632227
Methylated C's in CHH context
5841216
Methylated C's in Unknown context
707839
Unmethylated C's in CpG context
10405571
Unmethylated C's in CHG context
50198281
Unmethylated C's in CHH context
142225028
Unmethylated C's in Unknown context
2858024
Percentage methylation (CpG context)
68.0%
Percentage methylation (CHG context)
3.1%
Percentage methylation (CHH context)
3.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1601646
original top strand
CTOT
1537591
complementary to original top strand
CTOB
1548913
complementary to original bottom strand
OB
1605554
original bottom strand
Deduplication
Alignments analysed
6293704
Unique alignments
6098678
Duplicates removed
195026
Duplicated alignments were found at 163458 different positions
