File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr2096_10_s1_R1_bismark_bt2_pe.bam	17717127	6293704	9714892	1708531	0	195026	6098678	161979006	15010256	7412133	1253545	34551003	4613320	99138749
zr2096_1_s1_R1_bismark_bt2_pe.bam	28982766	4521751	23239578	1221436	1	113861	4407890	117187042	10156041	4825412	867748	23903571	3830928	73603342
zr2096_2_s1_R1_bismark_bt2_pe.bam	30798582	7879874	20682061	2236646	1	296976	7582898	190616346	16881804	8165931	1484733	40637178	7213704	116232996
zr2096_3_s1_R1_bismark_bt2_pe.bam	29892002	10170152	16789874	2931975	1	435847	9734305	262062166	27665110	9692932	2000329	56032292	7413378	159258125
zr2096_4_s1_R1_bismark_bt2_pe.bam	24341968	7587322	14662643	2092002	1	163952	7423370	186384892	14778915	8756708	1374799	38923593	6316301	116234576
zr2096_5_s1_R1_bismark_bt2_pe.bam	31778715	10309456	18728694	2740560	5	436171	9873285	252492402	20157186	11121885	1871699	51406712	7828745	160106175
zr2096_6_s1_R1_bismark_bt2_pe.bam	24237290	7735312	14340992	2160984	2	185029	7550283	190864683	17248355	7336625	1442731	39733116	6328119	118775737
zr2096_7_s1_R1_bismark_bt2_pe.bam	29534746	10263535	16560814	2710396	1	307646	9955889	259380298	22460519	10024937	2034052	54122929	7897415	162840446
zr2096_8_s1_R1_bismark_bt2_pe.bam	29761837	9031919	18352667	2377246	5	303983	8727936	223405198	17003347	9662409	1714400	46581820	7367274	141075948
zr2096_9_s1_R1_bismark_bt2_pe.bam	32636231	10389381	19378195	2868653	2	1209178	9180203	247569836	24620940	9054979	2094757	52006634	7736902	152055624