Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000044:409991-410084 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_6807.ps.pdf
Locus Name: Cluster_6807
AUUCAGUGUUUAUCGCUUCAAAUGACAUCUCAGGUUUGGGAAAUUUAUUUUUCCAAAUCUGUGAUGUUAUUGAAAGAGUUAACCAUUACGCAAG
....((((.(((.(.(((..(((((((((.(((((((((((((.....))))))))))))).)))))))))..))).).))).))))....... (-33.00)
....................AAUGACAUCUCAGGUUUGG....................................................... len:19 al:5
....................AAUGACAUCUCAGGUUUGGGAAg................................................... len:23 al:1
....................AAUGACgUCUCAGGUUUGGGAAA................................................... len:23 al:4
....................AAUGgCAUCUCAGGUUUGGGAAA................................................... len:23 al:1
....................AAUGACAUCUCAGGUUUGGGgA.................................................... len:22 al:1
....................cAUGACAUCUCAGGUUUGGGAAA................................................... len:23 al:1
....................AAcGACAUCUCAGGUUUGGGAA.................................................... len:22 al:1
....................AAUGACAUCUCAGGUUUGGGgAA................................................... len:23 al:1
....................AgUGACAUCUCAGGUUUGG....................................................... len:19 al:1
....................AAUGACAUCUCAGGUUUGGGAA.................................................... len:22 al:29
....................AAUGACAUCUCAGGUUUG........................................................ len:18 al:1
....................AAUGACAUCUCAGGUUUGGGAgA................................................... len:23 al:3
....................AAUGACAcCUCAGGUUUGGGAA.................................................... len:22 al:1
....................AAUGACAcCUCAGGUUUGGGAAA................................................... len:23 al:2
....................AAUGcCAUCUCAGGUUUGGGAAA................................................... len:23 al:1
....................AAcGACAUCUCAGGUUUGGGAAA................................................... len:23 al:1
....................AAUGACAUCUCAGGUUUGGGA..................................................... len:21 al:6
....................gAUGACAUCUCAGGUUUGG....................................................... len:19 al:1
....................AAUGACAUCUCAGGUUUGGGAAA................................................... len:23 al:212
....................AAUGACAUCcCAGGUUUGGGAAA................................................... len:23 al:2
....................AAUGACAUCUCAGGUUUGGGAAAU.................................................. len:24 al:1
....................AAUGACAaCUCAGGUUUGGGAAA................................................... len:23 al:1
....................AAUGACAUCUCAGGUUUGGGAAu................................................... len:23 al:7
.....................AUGACAUCUCAGGUUUGGGu..................................................... len:20 al:3
.....................AUGACAUCUCAGGUUUGGGAAu................................................... len:22 al:1
.....................AUGACAUCUCAGGUUUGGGA..................................................... len:20 al:13
.....................AUGACAUCUCAGGUUUGGG...................................................... len:19 al:5
......................UGACAUCUCAGGUUUGGGAAA................................................... len:21 al:2
......................UGACAUCUCAGGUUUGGGAA.................................................... len:20 al:1
..............................CAGGUUUGGGAAAUUUAUUUU........................................... len:21 al:1
...........................................UUUAUUUUUCCAAAUCUGUGAUGUUAUUGA..................... len:30 al:4
...........................................UUUAUUUUUCCAAAUCUGUGAUGUUAU........................ len:27 al:1
..............................................uUUUUUCCAAAUCUGUGAUGUUAUU....................... len:25 al:2
................................................UcUUCCAAAUCUGUGAUGUUAUUGA..................... len:25 al:1
.................................................cUUCCAAAUCUGUGAUGUUAUUGA..................... len:24 al:3
.................................................UUUCCAAAUCUGUGAUGUUAUUGA..................... len:24 al:1
..................................................UUCCAAAUCUGUGAUGUUA......................... len:19 al:22
..................................................UUCCAuAUCUGUGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUGAAA................... len:25 al:2
..................................................UUCCAAAUCUGUGAUGUUcUUGA..................... len:23 al:6
..................................................UUCCgAAUCUGUGAUGUUAUUGA..................... len:23 al:33
..................................................UUCuAAAUCUGUGAUGUUAUUG...................... len:22 al:1
..................................................UUCCAAAUuUGUGAUGUUAUUGA..................... len:23 al:8
..................................................UUCCAAAUCUGUGAUGUUAUgGA..................... len:23 al:1
..................................................UUCCAAAUCgGUGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGcU.......................... len:18 al:1
..................................................UUCCAAAUCUGcGAUGUUAUUG...................... len:22 al:3
..................................................UUCCAAAUCUGUGAUG............................ len:16 al:1
..................................................UUCCAAAUCUGUGAUGUUAUc....................... len:21 al:4
..................................................gUCCAAAUCUGUGAUGUUAUUGA..................... len:23 al:5
..................................................UUCCAAAUCUGUGAUGUUAUgG...................... len:22 al:2
..................................................UUCCAAAUCUGcGAUGUUAUUGA..................... len:23 al:44
..................................................cUCCAAAUCUGUGAUGUU.......................... len:18 al:1
..................................................UUCCAAAUCUGcGAUGUU.......................... len:18 al:1
..................................................UUCCAAAUCUGUGAUGUa.......................... len:18 al:2
..................................................cUCCAAAUCUGUGAUGUUAUUG...................... len:22 al:3
..................................................UUCCAAAUCUGUGAUGUgAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUGg..................... len:23 al:110
..................................................UUCCAAAUCUGUGAUGUUgUU....................... len:21 al:1
..................................................UUuCAAAUCUGUGAUGUUAUUGA..................... len:23 al:11
..................................................UUCCAAAUCUGUGAUGUUAUUGc..................... len:23 al:63
..................................................UUCCAAcUCUGUGAUGUUAU........................ len:20 al:1
..................................................UUCCAgAUCUGUGAUGUUAUUG...................... len:22 al:2
..................................................UUCCAAAUCUGaGAUGUUAUUG...................... len:22 al:2
..................................................UUCCgAAUCUGUGAUGUUAUUG...................... len:22 al:4
..................................................UUCCAgAUCUGUGAUGUUAUUGA..................... len:23 al:28
..................................................cUCCAAAUCUGUGAUGUUAUU....................... len:21 al:1
..................................................UUCCAAAUCUGUGAUGUcAUUG...................... len:22 al:2
..................................................UUCCAAAUCUGUGAUGUUAUUa...................... len:22 al:37
..................................................UUCCAAAUCUGcGAUGUUAUU....................... len:21 al:1
..................................................UUCCAAAUCUGUGAUaUUAUUG...................... len:22 al:1
..................................................UUCCAAAUCUGUGAUGUUAU........................ len:20 al:92
..................................................UUCCAAAUCUGUGAUGgU.......................... len:18 al:2
..................................................UUCCAAAUCUuUGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGUcAUUGA..................... len:23 al:23
..................................................UUCCAAAUCUGUGAUcUUAUU....................... len:21 al:1
..................................................UcCCAAAUCUGUGAUGUUAUUGAA.................... len:24 al:1
..................................................UUCCAAAUCUaUGAUGUUAUUGA..................... len:23 al:6
..................................................UaCCAAAUCUGUGAUGUUAUUGA..................... len:23 al:7
..................................................UUCCAAAUCUGUGAUGUc.......................... len:18 al:10
..................................................UUCCAAAUCUGUGAUGUUAaUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUGAA.................... len:24 al:45
..................................................aUCCAAAUCUGUGAUGUUAUUGA..................... len:23 al:17
..................................................UUCCAAAcCUGUGAUGUUAUUGA..................... len:23 al:31
..................................................UcCCAAAUCUGUGAUGUUAUUG...................... len:22 al:2
..................................................UUCCAAAUCUGUGAaGUUAUUGA..................... len:23 al:1
..................................................UcCCAAAUCUGUGAUGUUAUUGA..................... len:23 al:46
..................................................UUCCAAAUCUGUGAUGUUAUUGAuA................... len:25 al:16
..................................................UUCCAAAUCUGUGAUGUUAUUGu..................... len:23 al:674
..................................................UUCCAAcUCUGUGAUGUUAUUG...................... len:22 al:1
..................................................UUCCAAAUCUGUGAUGUUAcUGA..................... len:23 al:20
..................................................UUCCAAAUCUGUaAUGUUAUUGA..................... len:23 al:8
..................................................UUCCAAAUCUGUGAUGUUAUUu...................... len:22 al:2
..................................................UUCCAAcUCUGUGAUGUUAUUGA..................... len:23 al:7
..................................................UUCCAAAUCUGUGAUGUUAc........................ len:20 al:1
..................................................UUaCAAAUCUGUGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGUUAUcGA..................... len:23 al:26
..................................................UUCCAAAcCUGUGAUGUUAUUG...................... len:22 al:2
..................................................UUCCAAAUCUGUGAUGUUAUa....................... len:21 al:2
..................................................UUCCAAAUCaGUGAUGUUAUUGA..................... len:23 al:7
..................................................UUCCAAAUCUGUGAUGUUAUUcA..................... len:23 al:1
..................................................UUuCAAAUCUGUGAUGUUAUUG...................... len:22 al:1
..................................................UUCCAAAUCUGUGcUGUUAUUGA..................... len:23 al:4
..................................................UUCCAAAUCUGUaAUGUUAU........................ len:20 al:1
..................................................UUCCcAAUCUGUGAUGUUAUU....................... len:21 al:1
..................................................UUCCAAAUCUGUGAUGUg.......................... len:18 al:1
..................................................UUCCAAAUCUGaGAUGUUAUUGA..................... len:23 al:2
..................................................UUCCAAAUCUGUGAUGaUAUUGA..................... len:23 al:4
..................................................UUCCAAAUCUGUGAUGUUAcUG...................... len:22 al:2
..................................................UUCCAAAUCcGUGAUGUUAUUGA..................... len:23 al:44
..................................................UUCCAAAUCUGUGAUaUUAUUGA..................... len:23 al:9
..................................................UUCCAAAUCUGUGAUGUUAUUaA..................... len:23 al:7
..................................................cUCCAAAUCUGUGAUGUUAUUGA..................... len:23 al:87
..................................................cUCCAAAUCUGUGAUGUUAU........................ len:20 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUG...................... len:22 al:841
..................................................UUCCAAgUCUGUGAUGUUAUUGA..................... len:23 al:32
..................................................UUCCgAAUCUGUGAUGUUAU........................ len:20 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUGAAc................... len:25 al:11
..................................................UUCCAAAUCUGUGAUuUUAUUGA..................... len:23 al:1
..................................................UUCCAAgUCUGUGAUGUUAUUG...................... len:22 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUc...................... len:22 al:3
..................................................UUCCAAAUCUGUGAUGUUAUUGAc.................... len:24 al:1281
..................................................UUCuAAAUCUGUGAUGUUAUUGA..................... len:23 al:9
..................................................UUCCAAAUCUGUGAUGUUAgU....................... len:21 al:1
..................................................UUCCAcAUCUGUGAUGUUAUUG...................... len:22 al:1
..................................................UUCCAAAUCUGUGAUGUUgUUGA..................... len:23 al:20
..................................................UUCCAcAUCUGUGAUGUUAUUGA..................... len:23 al:8
..................................................UUCCAAAUCUGUGAUGUU.......................... len:18 al:124
..................................................UUCCAAAUCUGUGAUGUUAUUGAAAc.................. len:26 al:2
..................................................UUCCAAAUCUGUGAUGUUAUUGAg.................... len:24 al:3
..................................................UUCCAAAUCUGUGAUGcUAU........................ len:20 al:2
..................................................UUCCAAAUCUGUGuUGUUAUUGA..................... len:23 al:8
..................................................UUCCAAAUCUGUGAUGUUAUUGAAAu.................. len:26 al:5
..................................................UUCCAAAUCUGUGAUGUUAUUGAu.................... len:24 al:358
..................................................UUCCAAAUCUGUGAUGUUAUUGAAu................... len:25 al:20
..................................................UUCCAAAUaUGUGAUGUUAUUGA..................... len:23 al:3
..................................................UUCCuAAUCUGUGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAaGUUAUUG...................... len:22 al:2
..................................................UUCCAAAUCUGUGAUGUUAUU....................... len:21 al:130
..................................................UUCCAAAUCUGUGAcGUUAUUG...................... len:22 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUGgA.................... len:24 al:1
..................................................UUCCAAAUCUGUGAU............................. len:15 al:1
..................................................UUCCAAAUCcGUGAUGUUAUUG...................... len:22 al:3
..................................................UUCCAAAUCUGUGgUGUUAUUGA..................... len:23 al:69
..................................................UUCCAAAUCUGUGAUGUUAUUuA..................... len:23 al:3
..................................................UUCCAAAUCUGUGAcGUUAUUGA..................... len:23 al:40
..................................................UUCCAAAUCUGUGAUGcUAUUGA..................... len:23 al:40
..................................................UUCCAAAUCUcUGAUGUUAUUGA..................... len:23 al:3
..................................................UUCCAAAaCUGUGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGU........................... len:17 al:1
..................................................UUCCAAAUCcGUGAUGUUAU........................ len:20 al:2
..................................................UUCCAAgUCUGUGAUGUUAUU....................... len:21 al:1
..................................................UUCCAAgUCUGUGAUGUU.......................... len:18 al:1
..................................................UUCaAAAUCUGUGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGUUgUUG...................... len:22 al:7
..................................................UUCCAAAUCUGUGAUGUaAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAUGUUAUUGA..................... len:23 al:16518
..................................................UUCCcAAUCUGUGAUGUUAUUGA..................... len:23 al:10
..................................................UUCCAAAUCUGgGAUGUUAUUGA..................... len:23 al:1
..................................................UUCCAAAUCUGUGAgGUUAUUGA..................... len:23 al:2
...................................................UCCcAAUCUGUGAUGUUAUUGA..................... len:22 al:1
...................................................UCCAAAUCUGUGAUGU........................... len:16 al:1
...................................................UCCAAAUCUGUGAUGUUAUUGA..................... len:22 al:39
...................................................UCCAAAUCUGUGAcGUUAUU....................... len:20 al:1
...................................................UCCAAAUCUGUGAUGUUAUUGAu.................... len:23 al:1
...................................................UCCAAAUCUGUGAUGUUAUUGAc.................... len:23 al:6
....................................................CCAAAUCUGUGAUGUUAUUGAc.................... len:22 al:5
....................................................CCAAAUCUGUGAUGUUAUUGA..................... len:21 al:21
....................................................CCAAgUCUGUGAUGUUAUUGAA.................... len:22 al:1
....................................................CCAAAUCUGUGAUGUUAU........................ len:18 al:2
....................................................CCAAAUCUGUGAUGUUAUUGAA.................... len:22 al:1
....................................................CCAgAUCUGUGAUGUUAUUGA..................... len:21 al:2
....................................................CCAAAUCUGUGAUGUUAUUGc..................... len:21 al:1
....................................................CCAAAUCUGUGAUGU........................... len:15 al:1
....................................................CCAAAUCUGUGAUGUUAUUG...................... len:20 al:2
....................................................CCAAAUCUGUGAUGUUAUUGAu.................... len:22 al:3
.....................................................CAAAUCUGUGAUGUUAUUGA..................... len:20 al:7
.....................................................CAAAUCUGUGAUGUUAUUG...................... len:19 al:1
......................................................AAcUCUGUGAUGUUAUUGA..................... len:19 al:1
......................................................AAAUCUGUGAUGUUAUUGAc.................... len:20 al:1
......................................................AAAUCUGUGAUGUUAUUGAA.................... len:20 al:1
......................................................AAAUCUGUGAUGUUAUUGA..................... len:19 al:21
......................................................AAAUCUGUGAUGUUAUUGAu.................... len:20 al:2
......................................................AAAUCUGUGAUGUUAUUGu..................... len:19 al:1
.......................................................AAUCUGUGAUGUUAUUGA..................... len:18 al:2
........................................................AUCUGUGAUGUUAUUGA..................... len:17 al:1