Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000035:1989820-1989912 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_6456.ps.pdf
Locus Name: Cluster_6456
AUUUUUCUGUACCAAAUAGCUUUAUUUACAACUCUCAAAACAACAUUAUUUUGUUUUAAGAGUUGUGAAAAAAAUUAUUUGGUAAAUGAACAA
....(((..((((((((((.(((.(((((((((((.(((((((.......))))))).))))))))))).))).))))))))))...)))... (-29.60)
AUUUUUCUGUACCAAAUAGCUU....................................................................... len:22 al:2
.UUUcUCUGUACCAAAUAG.......................................................................... len:18 al:2
.UUUUUCUGUACCAAAUAGCUU....................................................................... len:21 al:27
.UUUUUCUGUACCAAAaAGCUU....................................................................... len:21 al:1
.UUUUUCcGUACCAAAUAGCUU....................................................................... len:21 al:2
..UUUUCUGUACCAAAUAGCUc....................................................................... len:20 al:2
..UUUUCUGUACCAAgUAGCUU....................................................................... len:20 al:1
..UUUUCUGUACCAAAUAGCgU....................................................................... len:20 al:1
..UUUUCcGUACCAAAUAGCUU....................................................................... len:20 al:2
..UUUUCUGUACCAAAUAGCUU....................................................................... len:20 al:57
..cUUUCUGUACCAAAUAGCUU....................................................................... len:20 al:1
..UUUUCUGUACCAAAUAGCUa....................................................................... len:20 al:1
...UUUCUGUACCAAAUAGCUg....................................................................... len:19 al:1
...UUUCUGUACCAAAUAGCUU....................................................................... len:19 al:26
....UUCUGUACCAAAUAGCUU....................................................................... len:18 al:3
..............AAUAGCUUUAUUUACAACUCU.......................................................... len:21 al:2
.....................cUAUUUACAACUCUCAAAACAACA................................................ len:24 al:2
.....................cUAUUUACAACUCUCAAAACAAC................................................. len:23 al:1
.....................UUAUUUACAACUCUCAAAACAAC................................................. len:23 al:1
......................UAUUcACAACUCUCAAAACAA.................................................. len:21 al:2
......................cAUUUACAACUCUCAAAACAAC................................................. len:22 al:17
......................UAUUUACAACUCUCAAAACAACu................................................ len:23 al:670
......................UAUUUACAACUCUCAA....................................................... len:16 al:1
......................UAUUUACAACUCUCAAgACAACA................................................ len:23 al:1
......................UAUUUACAACUCUCAcAACAACA................................................ len:23 al:1
......................UAUaUACAACUCUCAAAACAAC................................................. len:22 al:1
......................UAUUUACAACUCUCgAAACAA.................................................. len:21 al:1
......................UAUUUACAACUCUCAAAACAACAU............................................... len:24 al:10
......................UAUUUACAACUCUCAuAACAAC................................................. len:22 al:1
......................UgUUUACAACUCUCAAAACAAC................................................. len:22 al:11
......................UAUUUACAACUCUCAAAACA................................................... len:20 al:329
......................UAUUUACgACUCUCAAAACAAC................................................. len:22 al:22
......................UAUUUACAACUCUCAAAACAACAUUAUUUUa........................................ len:31 al:2
......................UAUUUACAACUCUuAAAACAAC................................................. len:22 al:3
......................UAUUUACAACUCUCAAAcCAA.................................................. len:21 al:1
......................UAUUUACAACUCUCAAgACA................................................... len:20 al:1
......................UAUUUACAACUCUCAAAACAc.................................................. len:21 al:5
......................UAUUUcCAACUCUCAAAACAAC................................................. len:22 al:4
......................UAUUUACAACUCUCAAAu..................................................... len:18 al:6
......................UAUUUACAACUCUCAAAACAACAUUAUc........................................... len:28 al:1
......................UAaUUACAACUCUCAAAAC.................................................... len:19 al:2
......................UAUUUACAuCUCUCAAAACAAC................................................. len:22 al:4
......................UAUUUACAACUCUCAAAACcAC................................................. len:22 al:1
......................UAUUUACAACUCUCAAAcCAAC................................................. len:22 al:5
......................UAUUUACAACUCUuAAAACAA.................................................. len:21 al:1
......................UAUUUACAACUCUCAAAACAgCAUUAUU........................................... len:28 al:1
......................UAUUUACAACUCUCAAAACAACAUUAUU........................................... len:28 al:29
......................UAUUUACAACUCUCAAgACAACAUUAUU........................................... len:28 al:1
......................UAUUUACAACUCUCAAAACAcCA................................................ len:23 al:1
......................UAUUUACAACUCUCAAAACAuC................................................. len:22 al:1
......................UAUUUACAACUCUCuAAACAACA................................................ len:23 al:1
......................UAUcUACAACUCUCAAAACA................................................... len:20 al:2
......................UAUUUACAACUCUCgAAACA................................................... len:20 al:2
......................UAUUUACAACUCUCAAAACAgC................................................. len:22 al:21
......................UAUUUACAACUCUCAAAAC.................................................... len:19 al:116
......................UAUUUACAACUCUCAAAACAACAUUAUUUUG........................................ len:31 al:149
......................UAUUUACgACUCUCAAAACAACA................................................ len:23 al:2
......................UAUUUACAACUCUCAAAACAACAUUAUa........................................... len:28 al:1
......................UAUUUACAACUCUCAAgACAA.................................................. len:21 al:4
......................UAUUUACAACUCUCAAA...................................................... len:17 al:6
......................UAUUUACAACUCUCAAAACAu.................................................. len:21 al:11
......................UAUcUACAACUCUCAAAAC.................................................... len:19 al:1
......................UAUUUACAACUCUCAAAACAACAc............................................... len:24 al:1
......................UAgUUACAACUCUCAAAACA................................................... len:20 al:1
......................UAUUUACgACUCUCAAAACAACAUUAUUUUG........................................ len:31 al:2
......................UAUUUACAACUCUCAgAACAACA................................................ len:23 al:2
......................UAUUUACAACUCUCAAAACgA.................................................. len:21 al:3
......................UAUcUACAACUCUCAAAACAA.................................................. len:21 al:5
......................UAUUUACAACUCUCAAAgCAACA................................................ len:23 al:2
......................cAUUUACAACUCUCAAAACAA.................................................. len:21 al:2
......................UAUUUACAACUCUCAAAACgAC................................................. len:22 al:17
......................UAUcUACAACUCUCAAAACAACAUUAUUUUG........................................ len:31 al:1
......................UAUUUACAACUCUCAAgACAAC................................................. len:22 al:16
......................aAUUUACAACUCUCAAAACAACA................................................ len:23 al:1
......................UAUUUACAACUCcCAAAACAA.................................................. len:21 al:3
......................UAUUUACAACUCUCAAAACAACAcU.............................................. len:25 al:1
......................UAUUUACAACUCUCAAAACAAC................................................. len:22 al:4733
......................UAUUcACAACUCUCAAAACAAC................................................. len:22 al:11
......................UAUUUACcACUCUCAAAACAA.................................................. len:21 al:1
......................UAUUUACAACUCUCAAAACAACAa............................................... len:24 al:2
......................UAUUUACAACUCUCAAAgCAAC................................................. len:22 al:10
......................UAUUUACAACUCUCAAAACAACAUUAUUUU......................................... len:30 al:5
......................UAUUUACAACUCUCAAAACuACA................................................ len:23 al:1
......................UAUUUgCAACUCUCAAAACAAC................................................. len:22 al:8
......................UAUUUACAACUCUCgAAACAACA................................................ len:23 al:1
......................UAUUUAuAACUCUCAAAACAA.................................................. len:21 al:2
......................cAUUUACAACUCUCAAAACA................................................... len:20 al:1
......................UAUUUACAACUCUCAAAACAAu................................................. len:22 al:187
......................UAUUUACAACUCUCAAAACAACAUc.............................................. len:25 al:1
......................UAUUUACAcCUCUCAAAACA................................................... len:20 al:1
......................UAUUUACAcCUCUCAAAACAA.................................................. len:21 al:1
......................UAUUUACAACUCUCAuAACAACAUUAUUUUG........................................ len:31 al:1
......................UAUUUACAACUCUCAAAACAACAg............................................... len:24 al:2
......................UAUUUACAACUCUCAAAA..................................................... len:18 al:43
......................UAUUUAuAACUCUCAAAACAACAUUAUUUUG........................................ len:31 al:1
......................UAUUUACAACcCUCAAAACAACA................................................ len:23 al:3
......................UAUcUACAACUCUCAAAACAACA................................................ len:23 al:5
......................UAcUUACAACUCUCAAAA..................................................... len:18 al:1
......................cAUUUACAACUCUCAAAACAACA................................................ len:23 al:1
......................UAUUUACAACUCUCAAAACg................................................... len:20 al:3
......................UAUUUACAACUCUCAAAACAACAUU.............................................. len:25 al:21
......................UAUUcACAACUCUCAAAAC.................................................... len:19 al:1
......................UAUUUACAACUCUCAAAACAACAcUAUUUUG........................................ len:31 al:1
......................UAUUUACAACUCUCAAu...................................................... len:17 al:1
......................UAUUUACcACUCUCAAAACAAC................................................. len:22 al:2
......................UAUcUACAACUCUCAAAACAAC................................................. len:22 al:13
......................UAUUUACAACUCUCAAAACAACg................................................ len:23 al:23
......................UAUUUACAACUCUCAAAACAACAUa.............................................. len:25 al:3
......................UAUUUACAACUCcCAAAACAAC................................................. len:22 al:16
......................UAUUUACAACUCUCAAAgCAA.................................................. len:21 al:1
......................UAUUUACAACUCUCAAAACAAa................................................. len:22 al:11
......................UAUUUACAACUCUCAcAACAAC................................................. len:22 al:1
......................UAUUUACAACUCUCAAAAuAAC................................................. len:22 al:3
......................UAUUUACAACUCUCAAAAaAA.................................................. len:21 al:2
......................UAUUUACAgCUCUCAAAACAAC................................................. len:22 al:9
......................UAUUUACAACUCUCAgAAC.................................................... len:19 al:1
......................UAUUUACAACcCUCAAAACAA.................................................. len:21 al:5
......................UAUUUACAAuUCUCAAAACAAC................................................. len:22 al:2
......................UAUUUACAACUCUCAAAACcA.................................................. len:21 al:1
......................UAUUUACAACUCUCcAAACAAC................................................. len:22 al:1
......................aAUUUACAACUCUCAAAACAAC................................................. len:22 al:17
......................UAUUUACAACUCUCAAAACAACAUUAUUgU......................................... len:30 al:1
......................UAUUUACAACUCUCAAAACAACAUUA............................................. len:26 al:4
......................UAUUUAuAACUCUCAAAACAAC................................................. len:22 al:2
......................UAUUUACAACUCUCAAgACAACAUUAUUUUG........................................ len:31 al:1
......................UAUUUACAACUCUCAAAACAACuU............................................... len:24 al:2
......................UAUUUACAACaCUCAAAACAAC................................................. len:22 al:3
......................UAcUUACAACUCUCAAAACAA.................................................. len:21 al:3
......................aAUUUACAACUCUCAAAACAA.................................................. len:21 al:5
......................UAUUUACAACUCUCAgAACAAC................................................. len:22 al:10
......................UAUUUACAACUCcCAAAACAACA................................................ len:23 al:2
......................UAUUUACAACUCcCAAAACA................................................... len:20 al:4
......................UAUUUACAACUCUCAAAAu.................................................... len:19 al:9
......................UuUUUACAACUCUCAAAACAA.................................................. len:21 al:1
......................UAUUUACAACUCUCAAAACAACAUUAUaUUG........................................ len:31 al:1
......................aAUUUACAACUCUCAAAAC.................................................... len:19 al:1
......................UAcUUACAACUCUCAAAACA................................................... len:20 al:1
......................UAUUUACAACUCUCAAAACAg.................................................. len:21 al:1
......................UAUUUACAACUCUCAAAACAACgU............................................... len:24 al:3
......................UAUUUACcACUCUCAAAACAACA................................................ len:23 al:1
......................UAUUUACAACUCUCgAAACAAC................................................. len:22 al:16
......................UgUUUACAACUCUCAAAACAACA................................................ len:23 al:1
......................UAUUUACAACUCUCgAAACAACAUUAUUUUG........................................ len:31 al:1
......................UAUUUACAgCUCUCAAAACAACA................................................ len:23 al:2
......................UAUUUACAACUCUCAAAACu................................................... len:20 al:3
......................UAUUUACAcCUCUCAAAACAAC................................................. len:22 al:3
......................UAUUUACAcCUCUCAAAACAACA................................................ len:23 al:1
......................UAUUUACAACUCUCAAAACAAuA................................................ len:23 al:3
......................cAUUUACAACUCUCAAAA..................................................... len:18 al:1
......................UAUUUACAACUCUCAAAACAACAUUAUUUa......................................... len:30 al:1
......................UAUUUACAACcCUCAAAACAAC................................................. len:22 al:11
......................UAcUUACAACUCUCAAAACAAC................................................. len:22 al:17
......................UcUUUACAACUCUCAAAACAAC................................................. len:22 al:6
......................UAUUUACAACUCUCAAAACAACAUUAU............................................ len:27 al:1
......................aAUUUACAACUCUCAAAACA................................................... len:20 al:1
......................UAUUUACAACUCUCcAAACA................................................... len:20 al:1
......................UAUUUACAACUCUCAAAACAA.................................................. len:21 al:723
......................UAUUUACgACUCUCAAAAC.................................................... len:19 al:4
......................UAUUUgCAACUCUCAAAACAACA................................................ len:23 al:1
......................UAUUUACAACUCUCAgAACAA.................................................. len:21 al:5
......................UAUUUACAACUCUCAAAACAACc................................................ len:23 al:49
......................UAUUUACAACUCUCuAAACAAC................................................. len:22 al:1
......................UAUUUACAACUCUCAAAgCA................................................... len:20 al:1
......................UAUUUACAACUCUCAAAACAACAUUAUUU.......................................... len:29 al:17
......................UAUUUACgACUCUCAAAACAACAUUAUUU.......................................... len:29 al:1
......................UAUUUACAgCUCUCAAAACAA.................................................. len:21 al:2
......................UAUUUACAACUCUCAAAACAgCAUUAUUUUG........................................ len:31 al:1
......................UAUUUgCAACUCUCAAAAC.................................................... len:19 al:1
......................UAUUUACAACUCUCAAAACAACA................................................ len:23 al:662
......................UAaUUACAACUCUCAAAACAAC................................................. len:22 al:1
......................UAUUUACAACUCUCAAAACgACA................................................ len:23 al:2
.......................AUUUACAACUCUCAAAACAACA................................................ len:22 al:7
.......................AUUUcCAACUCUCAAAACAACA................................................ len:22 al:1
.......................AUUUACAACUCUCAAAACAACu................................................ len:22 al:1
.......................AUUUACAACUCUCAAgACAAC................................................. len:21 al:1
.......................AUUUACAACUCUCAAAACAAuA................................................ len:22 al:1
.......................AUUUACgACUCUCAAAACAA.................................................. len:20 al:1
.......................AUUUACAACUCUCAAAACAAC................................................. len:21 al:19
.......................AUUUACAACUCUCAAAACcAC................................................. len:21 al:1
.......................AUUUACAACUCUCAAAACAA.................................................. len:20 al:18
.......................AUUUACAACUCUCAAAgCAAC................................................. len:21 al:1
.......................AUUUgCAACUCUCAAAACAAC................................................. len:21 al:4
.......................AUUUACAACUCUCAAAACAACg................................................ len:22 al:2
.......................AUUUACAACUCUCAAAACA................................................... len:19 al:2
.......................AUUUACAACUCUCAAAAC.................................................... len:18 al:1
.......................AUUUACAgCUCUCAAAACAACA................................................ len:22 al:1
........................UUUACAACUCUCAAAACAACA................................................ len:21 al:3
........................UUUACAACUCUCAAAACA................................................... len:18 al:2
........................UUUgCAACUCUCAAAACAA.................................................. len:19 al:1
........................UUUACAACUCUCAAAACAA.................................................. len:19 al:22
........................UUUACAACUCUCAAAACAAa................................................. len:20 al:1
........................UUUACAACUCUCAAAACAACu................................................ len:21 al:2
........................cUUACAACUCUCAAAACAA.................................................. len:19 al:1
........................UUUACAACUCUCAAAACAACAUUAUU........................................... len:26 al:1
........................UUUACAACUCUCAAAACAACAUUAU............................................ len:25 al:1
........................UUUACAACUCUCAAAACAAC................................................. len:20 al:5
........................UUUACgACUCUCAAAACAAC................................................. len:20 al:1
.........................UUACAACUCUCAAAACAACA................................................ len:20 al:1
.........................UUACAACUCUCAAAACAAC................................................. len:19 al:4
.........................UUACAACUCUCAAAACAACAUUAUUUUGUU...................................... len:30 al:1
.........................UUACAACUCUCAAAA..................................................... len:15 al:1
.........................UUACAACUCUCAAAACAA.................................................. len:18 al:1
..........................UACAACUCUCAAAACAACu................................................ len:19 al:1
..........................UACAACUCUCAAAACAAC................................................. len:18 al:2
..........................UACAACUCUCAAAACA................................................... len:16 al:1
..........................UACAACUCUCAAAACAACAUUAUUUUGU....................................... len:28 al:1
..........................UACAACUCUCAAAACAACA................................................ len:19 al:1
..........................UACAACUCUCAAAACAACAUUAUUUUGUU...................................... len:29 al:1
...........................ACAACUCUCAAAACAACAUUAUUUUGUU...................................... len:28 al:1
...........................ACAACUCUCAAAACAA.................................................. len:16 al:1
............................CAACUCUCAAAACAACAUUAUU........................................... len:22 al:3
............................CAACUCUCAAAACAACAUUAUUUUGUU...................................... len:27 al:3
..............................ACUCUCAAAACAACAUUAUUUUGUUUUA................................... len:28 al:1
..............................ACUCUCAAAcCAACAUUAUUUUGUUUUA................................... len:28 al:1
...............................................AUUUUGUUUUAAGAGUUGUGA......................... len:21 al:1
................................................UUUUGUUUUAAGAGUUGUGA......................... len:20 al:1
................................................UUUUGUUUUAAGAGUUGUGAA........................ len:21 al:3
.................................................UUUGUUUUAAGAGUUGUGAAAAu..................... len:23 al:1
.................................................UUUGUUUUAAGAGUUGUGAA........................ len:20 al:1
..................................................UUGUUUUAAGAGUUGUGAAAA...................... len:21 al:2
..................................................UUGUUUUAAGAGUUGUGAAAAu..................... len:22 al:1
..................................................UUGUUUUAAGAGUUGUGAAA....................... len:20 al:17
..................................................UUGUUUUcAGAGUUGUGAAA....................... len:20 al:1
..................................................UUGUUUUAAGAGUUGUGAAAAAAA................... len:24 al:2
..................................................UUGUUUUAAGAGUUGUGAAu....................... len:20 al:3
..................................................UUGUUUUAAGAGUUGUGAAAAA..................... len:22 al:3
..................................................UUGUUUUAAGAGUUGUGAA........................ len:19 al:25
..................................................UcGUUUUAAGAGUUGUGAA........................ len:19 al:1
..................................................UUGUUUUAAGAGUUGUGAAAAAA.................... len:23 al:2
..................................................UUGUUUUAAGAGUUGUGA......................... len:18 al:5
...................................................UGUUUUAgGAGUUGUGAAAAAA.................... len:22 al:1
...................................................UGUUUUAAGAGUUGaGAAAA...................... len:20 al:1
...................................................UGUUUUAAGAGUUGUGAAAAuA.................... len:22 al:1
...................................................UGUUUUgAGAGUUGUGAA........................ len:18 al:3
...................................................UGUUUUAAGAGUUGUGAAAAA..................... len:21 al:61
...................................................UGUUUUAAGAGUUGUaAAAAA..................... len:21 al:1
...................................................UGgUUUAAGAGUUGUGAAAA...................... len:20 al:1
...................................................UGUUUUAAGgGUUGUGAAA....................... len:19 al:1
...................................................UGUUUUAAGAGUUGUGAu........................ len:18 al:33
...................................................UGUUUUAAGAGUUGUGAAAAu..................... len:21 al:2
...................................................UGUUUUAAGAGUUGUGuA........................ len:18 al:1
...................................................UGUUUUAAGAGUUGUGAAA....................... len:19 al:115
...................................................UGUUUUAAGAGUUGUGAAAuA..................... len:21 al:1
...................................................UGUUUUAAGAGUUGUGAAAAAAg................... len:23 al:2
...................................................UGUUUUAAGAGUUGcGAAAAA..................... len:21 al:1
...................................................UGUUUUAAGAGUUGUGAAAu...................... len:20 al:5
...................................................UGUUUUAAGAGUUGUGAgA....................... len:19 al:1
...................................................UGUcUUAAGAGUUGUGAAAAAA.................... len:22 al:1
...................................................UGUgUUAAGAGUUGUGAA........................ len:18 al:1
...................................................UGUUUUAAGAGUUGUGAAAAAAu................... len:23 al:20
...................................................UGUUUUAAGAGUcGUGAA........................ len:18 al:1
...................................................UGUUUUAAGAGUUGUGAAAAAAuU.................. len:24 al:19
...................................................UGUUUUAAGAGUUGUGA......................... len:17 al:3
...................................................UGUUUUgAGAGUUGUGAAA....................... len:19 al:1
...................................................UGUUUUAAGAGUUaUGAAAAA..................... len:21 al:2
...................................................UGUUUUAAGgGUUGUGAAAAAA.................... len:22 al:1
...................................................UGUUUUAAGAGUUGUGgAAAAA.................... len:22 al:1
...................................................UGUUUUAAGAGUUGUGAAAA...................... len:20 al:41
...................................................UGcUUUAAGAGUUGUGAA........................ len:18 al:2
...................................................UGUUUUAAGAGUUGcGAA........................ len:18 al:2
...................................................UGUUUUAAGAGUUGUGAA........................ len:18 al:679
...................................................UGUUUUAAGAGUUGU........................... len:15 al:1
...................................................aGUUUUAAGAGUUGUGAAA....................... len:19 al:1
...................................................UGUUUUAAGAGUUGUGAAc....................... len:19 al:1
...................................................UGUUUUAAGgGUUGUGAAAAAAA................... len:23 al:1
...................................................UGUUUUAAGAGUUGUaAAA....................... len:19 al:1
...................................................UGUUUUAAGAGUUGUGAAAAAA.................... len:22 al:58
...................................................UGUUUUAAGAGUUGUGAAuA...................... len:20 al:3
...................................................UGUUUUAAGAGUUGUGAAAAAAc................... len:23 al:1
...................................................UGUUUUAAGAGUUGUGAAuAA..................... len:21 al:1
...................................................UGUUUUAAGAGUUGUGAuA....................... len:19 al:2
...................................................UGUUUUAAGAGUUGUGAAAAAAA................... len:23 al:10
...................................................UGUUUUAAGAGUUGUGAAu....................... len:19 al:49
...................................................UGUUUUAAGgGUUGUGAA........................ len:18 al:2
...................................................cGUUUUAAGAGUUGUGAA........................ len:18 al:2
...................................................UGUUUUAAGAGUUGUGAuAA...................... len:20 al:1
...................................................UGUUUUAAGAGUaGUGAA........................ len:18 al:1
...................................................UGUUUUAAGAGUcGUGAAAA...................... len:20 al:1
...................................................UGUUUUAAGAGUUGUGAAAAAAAa.................. len:24 al:1
...................................................UGUUcUAAGAGUUGUGAAAAAA.................... len:22 al:2
...................................................UGUUUUAAGAGUUGUGAAAAAAAUa................. len:25 al:1
.....................................................UUUUAAGAGUUGUGA......................... len:15 al:1
.....................................................UUUUAAGAGUUGUGAAAAAAA................... len:21 al:3
.....................................................UUUUAAGAGUUGUGAA........................ len:16 al:2
.....................................................UUUUAAGAGUUGUGAAAu...................... len:18 al:9
.....................................................UUUUAAGAGUUGUGAAAAA..................... len:19 al:13
.....................................................UUUUAAGAGUUGUGAAAAAAu................... len:21 al:4
.....................................................UUUUAAGAGUUGUGAAAAuA.................... len:20 al:1
.....................................................UUUUAAGAGUUGUGAAAA...................... len:18 al:7
.....................................................UUUUAAGAGUUGUGAAAAAu.................... len:20 al:2
.....................................................UUUUAAGAGUUGUGAAAAAA.................... len:20 al:12
......................................................UUUAAGAGUUGUGAAAAAAu................... len:20 al:1
......................................................UUUAAGAGUUGUGAAAAAA.................... len:19 al:1
.......................................................UUAAGAGUUGUGAAAAAA.................... len:18 al:1
.........................................................................AUUAUUUGGUAAAUGAACAA len:20 al:1
.........................................................................AUUAUUUGGUAAAUGAACA. len:19 al:1
.........................................................................AUUAUUUGGUAAAcGAACAA len:20 al:2