Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000026:1154718-1154812 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5749.ps.pdf
Locus Name: Cluster_5749
UAUAUUGCCACUUUACAAAUGUACUAUGUUCAUGAUCUUGCACUUAAUAGGUAAGAUCAAGUUCAUGGUAUUCUUGUGAUGUGGUUUUUCACUGU
......(((((.((((((..((((((((..(.(((((((((.((....))))))))))).)..))))))))..)))))).))))).......... (-36.10)
...................UGUgCUAUGUUCAUGAUCUUGC...................................................... len:22 al:1
...................UGUACUAcGUUCAUGAUCUUGCACU................................................... len:25 al:1
...................UGUACUAUGUUCAUGAUCUUGCACc................................................... len:25 al:1
...................UGUACUAUGUUCAUGAUCUUaCAC.................................................... len:24 al:1
...................UGUACUAUGUUCcUGAUCUUGCA..................................................... len:23 al:1
...................UGUACUAUGUUCAUGAUCc......................................................... len:19 al:1
...................UGUACUAUGUUCgUGAUCUUGC...................................................... len:22 al:1
...................UGUACUAcGUUCAUGAUCUUGC...................................................... len:22 al:1
...................UGUACUAUGUUCAUGAUCUUGCcC.................................................... len:24 al:1
...................UGUACUAUGUUCAUGAUCUUGCACUUAAU............................................... len:29 al:1
...................UGUACUAUGUUCAUGAUCcUGC...................................................... len:22 al:1
...................UGUACUAUGgUCAUGAUCU......................................................... len:19 al:1
...................UGUACUAUGUUCgUGAUCUUGCAC.................................................... len:24 al:1
...................UGUACUAUGUUCAUGAUCUUGCAa.................................................... len:24 al:3
...................UGUACUAUGUUCAUGAUCUUGCACUUAAUA.............................................. len:30 al:1
...................UGUACUAUGUUCAUGAUCUUGCA..................................................... len:23 al:81
...................aGUACUAUGUUCAUGAUCUUGCA..................................................... len:23 al:1
...................UGUACUAUGUUCAUGAUCUUGCACU................................................... len:25 al:15
...................UGUACUAUGUUCAUGAUCUUaC...................................................... len:22 al:1
...................UGUACUAUGUUCAUGAUCaU........................................................ len:20 al:1
...................UGUACUAUGUUCAUGAUCUc........................................................ len:20 al:1
...................UGUgCUAUGUUCAUGAUCUUGCA..................................................... len:23 al:1
...................UGUACUAUGUUCAUGAUCUUGCAu.................................................... len:24 al:15
...................UGUACUAUGUUCAUGAUCUUGC...................................................... len:22 al:230
...................UGUACUAUGUUCAUGAUCUUGCAuU................................................... len:25 al:2
...................UGUACUAUGUUCAUGAUCUUGu...................................................... len:22 al:37
...................UGUACUAUGUUCAUGAUCU......................................................... len:19 al:30
...................UGUACUAUGUUCAUGAUCUUG....................................................... len:21 al:8
...................UGUgCUAUGUUCAUGAUCUUGCAC.................................................... len:24 al:1
...................UGUACUAUGUUCAUGAUCUUGCACa................................................... len:25 al:5
...................UGUACUAUGUUCAUGAUC.......................................................... len:18 al:21
...................UGUACUAUGUUCAUGAUCUUGCAC.................................................... len:24 al:76
...................UGUACUAUGUUCAUGAUCUa........................................................ len:20 al:1
...................UGUACUAaGUUCAUGAUCUUGC...................................................... len:22 al:1
...................UGUACUAUGUUCAUGAUCUUGCACUUu................................................. len:27 al:2
...................UGUACUAUGUUCAUGAUCUUGCu..................................................... len:23 al:48
...................UGUACUAUGUUCAUGAUCUUGCc..................................................... len:23 al:227
...................UGUACUAUGUUCAUGAUCUU........................................................ len:20 al:16
...................UGUACUAUGUUCAUGAUCUUGCACUU.................................................. len:26 al:1
...................UGUACUAUGUUCAUGAUCUUGa...................................................... len:22 al:2
...................UGUACUAUGUUCAcGAUCU......................................................... len:19 al:1
...................UGUACUAUGUUCAcGAUCUUGC...................................................... len:22 al:1
....................GUACUcUGUUCAUGAUCUUGCA..................................................... len:22 al:1
....................GUACUAUGUUCAUGAUCUUGCA..................................................... len:22 al:3
.....................UgCUAUGUUCAUGAUCUUGC...................................................... len:20 al:1
.....................UACUAUGUUCAUGAUCUUGu...................................................... len:20 al:6
.....................UACUAUGUUCAUGAUCUUGC...................................................... len:20 al:18
.....................UACUAUGUUCAcGAUCUUGC...................................................... len:20 al:1
.........................AUGUUCAUGAUCUUGCgCUUAAUAGGUA.......................................... len:28 al:2
.........................AUGUUCAUGAUCUUGCAaU................................................... len:19 al:1
...........................................UUAAUAGGUAAGAUCAAGUUCAUGGcAUUCU..................... len:31 al:1
...........................................UUAAUAGGUAAGAUCgAGUUCAUGGUAUUCU..................... len:31 al:1
...........................................UUAAUAGGUAAGgUCAAGUUCAUGGUAUUCU..................... len:31 al:3
...........................................UUAAUgGGUAAGAUCAAGUUCAUGGUAUUCU..................... len:31 al:2
...........................................UUAAUAGGUAAGAUCAAGcUCAUGGUAUUCU..................... len:31 al:1
...........................................UUAAUAGGUAAGAUCAAGUUCAgGGUAUUCU..................... len:31 al:1
...........................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCa..................... len:31 al:2
...........................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCU..................... len:31 al:137
...........................................UUAAUAGGUAAGAUCAAGUUCAcGGUAUUCU..................... len:31 al:1
...........................................UUAAUAGGUAgGAUCAAGUUCAUGGUAUUCU..................... len:31 al:1
...........................................UUAAUAGGUAAGAUCAAGUUCAUGGUAcUCU..................... len:31 al:1
...........................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUaU..................... len:31 al:1
...........................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCc..................... len:31 al:9
............................................UAAUAGGUAAGAUCAAGUUCAUGGUAUUCU..................... len:30 al:1
.............................................AAUAGGUAAGAUCAAGUUCAUGGUAUUCU..................... len:29 al:1
..............................................AUAGGUAAGAUCAAGUUCAUGGUAUUCU..................... len:28 al:1
...............................................UAGGUAAGAUCAAGUUCAUGGUAUUCU..................... len:27 al:3
................................................AGGUAAGAUCAAGUUCAUGGUAcUCU..................... len:26 al:1
................................................AGGUAAGAUCAAGUUCAUGGUAUUCU..................... len:26 al:2
.................................................GGUAAGAUCAAGUUCAUGGUAUUCU..................... len:25 al:5
.................................................GGUAAGAUCAAGUUCAUGGUAUU....................... len:23 al:4
.................................................GGUAAGAUCAAGUUCAUGGUAUUC...................... len:24 al:4
...................................................UAAGAUCcAGUUCAUGGUAUUC...................... len:22 al:2
...................................................UAAGAUCgAGUUCAUGGUAUUCU..................... len:23 al:81
...................................................UAAGAUCAAGUUCAUGGcAUUC...................... len:22 al:2
...................................................UAAGAUCAAGUUCAUuGU.......................... len:18 al:1
...................................................UAAGcUCAAGUUCAUGGUAUUCU..................... len:23 al:22
...................................................UAAGAUCAAaUUCAUGGUAUUC...................... len:22 al:2
...................................................UAAGuUCAAGUUCAUGGUAUUCU..................... len:23 al:7
...................................................UAAGAUCgAGUUCAUGGUAUUC...................... len:22 al:5
...................................................UAgGAUCAAGUUCAUGGUAUU....................... len:21 al:1
...................................................UAAGAUCAAGUUCAUGGUAUUCgU.................... len:24 al:3
...................................................UAAGAUCAAGUUCAUGGUAUUu...................... len:22 al:29
...................................................UAAGAUCAAGcUCAUGGUAUUCU..................... len:23 al:57
...................................................UAAGAUCAAGUUCAUGGUAUUCUc.................... len:24 al:2
...................................................UAAGAUCAAGUcCAUGGU.......................... len:18 al:1
...................................................UAAGAUCAAGUaCAUGGUAUUCU..................... len:23 al:4
...................................................UAgGAUCAAGUUCAUGGUAUUCU..................... len:23 al:55
...................................................UAAGAUCAAGUUCAUGGUAUUgU..................... len:23 al:10
...................................................UAAGAUCAAGcUCAUGGUAUU....................... len:21 al:1
...................................................UAAGAUCAAGUUCAcGGUAUUC...................... len:22 al:3
...................................................UAAGAUCAAGUUCAUGGUAUUCUgGU.................. len:26 al:1
...................................................UAAGAUCAAGUUCAUGGUAUUCaU.................... len:24 al:2
...................................................UAAGAUCAAGUUCAUGGUAUcC...................... len:22 al:3
...................................................UAAGAUCAAGUUCAUGGUAUUCUUuU.................. len:26 al:3
...................................................UAAGAUCAAGUUCAUGGc.......................... len:18 al:10
...................................................UAAGAUCAAGUUCAUGGUAUUC...................... len:22 al:1278
...................................................UAAGAUCAAGUUCAUGGUAUg....................... len:21 al:1
...................................................UAAGAUCAcGUUCAUGGUAUUCU..................... len:23 al:8
...................................................UAAGAUCAAGUUCAUGGUAcUCU..................... len:23 al:36
...................................................UAAuAUCAAGUUCAUGGUAUUCU..................... len:23 al:1
...................................................UAAGAUCAAGcUCAUGGUAUUC...................... len:22 al:2
...................................................UAAGAUCgAGUUCAUGGU.......................... len:18 al:1
...................................................UAgGAUCAAGUUCAUGGUA......................... len:19 al:1
...................................................UAAaAUCAAGUUCAUGGUAUUCU..................... len:23 al:7
...................................................UAAGAUCAAGUUCAUGGUAUc....................... len:21 al:7
...................................................UAAGAUCAAGUUCAUGGUAUUCUUGU.................. len:26 al:4
...................................................UAAGAUCAAGUUCAUGa........................... len:17 al:1
...................................................UAAGAUaAAGUUCAUGGUAUUCU..................... len:23 al:1
...................................................UgAGAUCAAGUUCAUGGUAUUC...................... len:22 al:3
...................................................UAAGAUCAAGUUCAcGGUAUUCUU.................... len:24 al:1
...................................................UAAGAcCAAGUUCAUGGUAUUCUU.................... len:24 al:1
...................................................UAAGAUCuAGUUCAUGGUAUUCU..................... len:23 al:3
...................................................UgAGAUCAAGUUCAUGGUAUUCU..................... len:23 al:54
...................................................UAAGAaCAAGUUCAUGGUAUUCU..................... len:23 al:8
...................................................UAAGAUCAuGUUCAUGGUAUUCU..................... len:23 al:4
...................................................UAAGAUCAAaUUCAUGGUAUUCU..................... len:23 al:9
...................................................UAAGAUCAAGUUCAUGGUAUUaU..................... len:23 al:61
...................................................UAAGAUCAAGUcCAUGGUAUUCU..................... len:23 al:64
...................................................UAAGAUCAAGUUCAUGGUAc........................ len:20 al:1
...................................................UAAGAUCAAGUUCAUuGUA......................... len:19 al:1
...................................................cAAGAUCAAGUUCAUGGUAUUC...................... len:22 al:2
...................................................UAAGAUCAAGUUCcUGGUAUUCU..................... len:23 al:8
...................................................UAAGAUCAAGUUCAUG............................ len:16 al:7
...................................................UAAGAUCAAGUUCAUGGU.......................... len:18 al:117
...................................................UAAGAUCAAGUUCAgGGUAUUCU..................... len:23 al:4
...................................................UcAGAUCAAGUUCAUGGUAUUCU..................... len:23 al:3
...................................................UAAGAUCAcGUUCAUGGUAUUC...................... len:22 al:1
...................................................UAAGAUCAgGUUCAUGGUA......................... len:19 al:1
...................................................UAAGAUCAAGUUCAUGGUAUUa...................... len:22 al:10
...................................................UAAGAUCAAGUcCAUGGUAUUC...................... len:22 al:1
...................................................UAAGAUCAAGUUCAUGGaAU........................ len:20 al:4
...................................................UAAGAUCAAGUUCAUGaUAUUCU..................... len:23 al:22
...................................................UAAGAUCAAGUUCAUGGUAcUC...................... len:22 al:5
...................................................UAAGAUCAAGUUCAUGGUAUUCUa.................... len:24 al:747
...................................................UuAGAUCAAGUUCAUGGUAUUCU..................... len:23 al:4
...................................................UAAGAUCAAGUUCAUGGUAUa....................... len:21 al:1
...................................................UAAGAUCAAGUUCAUGGUgUUC...................... len:22 al:5
...................................................UAAGAUCAAGUUCAUGGUAUU....................... len:21 al:148
...................................................UAAGAUCAAGUUCAUGGUu......................... len:19 al:2
...................................................UAAGAUCAAGUUCAUGGgAUUCU..................... len:23 al:5
...................................................UAAGAUCAAGUUCAUGuUAUUCU..................... len:23 al:2
...................................................UAAGAUuAAGUUCAUGGUAUUCU..................... len:23 al:15
...................................................UAAGAUCAAGUUCAUGaUAUUCUU.................... len:24 al:1
...................................................UAAGAUCAAGUUCAUuGUAUUCU..................... len:23 al:3
...................................................UAuGAUCAAGUUCAUGGUAUUCU..................... len:23 al:3
...................................................UAgGAUCAAGUUCAUGGUAUUC...................... len:22 al:5
...................................................UAAGAcCAAGUUCAUGGUAUUC...................... len:22 al:4
...................................................UAAGAUCAAGUUCAUGGUAUUCUg.................... len:24 al:3
...................................................UAAaAUCAAGUUCAUGGUAUUC...................... len:22 al:2
...................................................UAAGAUCAAGUUuAUGGUAUUCU..................... len:23 al:18
...................................................UAAGAUCAAGUUCAUaGUAUUCU..................... len:23 al:15
...................................................UAAGAUCAAGUUCgUGGUAUUC...................... len:22 al:8
...................................................UAAGAUCAAGUUCAUGaU.......................... len:18 al:2
...................................................UAAGAUCAgGUUCAUGGUAUUC...................... len:22 al:2
...................................................UAAGAUCAAGUUCAUGGUuUUCU..................... len:23 al:1
...................................................UAAGAUCAAGUgCAUGGUAUUCU..................... len:23 al:1
...................................................UAAGAUCAAGUUCAcGGUAUUCU..................... len:23 al:54
...................................................UAAGAUCAAGUUCAUGGUA......................... len:19 al:188
...................................................UAuGAUCAAGUUCAUGGUAUUC...................... len:22 al:3
...................................................UAAGAUCAAGUUCAUGGUAaUCU..................... len:23 al:2
...................................................UAAGAUuAAGUUCAUGGUAUU....................... len:21 al:1
...................................................gAAGAUCAAGUUCAUGGUAUUC...................... len:22 al:1
...................................................UgAGAUCAAGUUCAUGGU.......................... len:18 al:1
...................................................UAAGAUCAAGUUCAUGGUAUUCc..................... len:23 al:1853
...................................................UAAGAUCAAGUUCAUGGaA......................... len:19 al:1
...................................................UAAGAUCAAGUUCAUGGUAgU....................... len:21 al:3
...................................................UAcGAUCAAGUUCAUGGUAUUCU..................... len:23 al:7
...................................................UAAGAUCAAGUUCAUGG........................... len:17 al:1
...................................................UAAGAUCAAGUUCAUGGUAUaC...................... len:22 al:1
...................................................UAAGAUCAgGUUCAUGGUAUUCU..................... len:23 al:67
...................................................UAAGgUCAAGUUCAUGGUAUUCU..................... len:23 al:68
...................................................UAcGAUCAAGUUCAUGGUAUUC...................... len:22 al:1
...................................................UAAGAUCgAGUUCAUGGUAUU....................... len:21 al:2
...................................................UAgGAUCAAGUUCAUGGUAUUCUU.................... len:24 al:2
...................................................cAAGAUCAAGUUCAUGGUAUUCU..................... len:23 al:81
...................................................aAAGAUCAAGUUCAUGGUAUUCU..................... len:23 al:87
...................................................UAAGAUCAAGUUCAUGGcAUUCU..................... len:23 al:25
...................................................UAAGAUCAAGUUaAUGGUAUUCU..................... len:23 al:3
...................................................UAAGAcCAAGUUCAUGGUAUUCU..................... len:23 al:71
...................................................UAAGAUCAAGUUCgUGGUAUUCU..................... len:23 al:77
...................................................UAAGcUCAAGUUCAUGGUAUUC...................... len:22 al:2
...................................................UAAGAUCAAGUUCAUGGUAUUCUUaU.................. len:26 al:1
...................................................UAAGAUCAAGUUCAUGGUcUUCU..................... len:23 al:2
...................................................UAAGAUCAAGUUCgUGGUA......................... len:19 al:1
...................................................UAAGAUCAAGUUCAUGGUAcU....................... len:21 al:1
...................................................UAAGAUCAAGUUCAUGGaAUU....................... len:21 al:2
...................................................UAAGAUCAAGUUCAUGGUAUgC...................... len:22 al:3
...................................................UAAGAUCAAGUUCAUGGUAUUCUU.................... len:24 al:76
...................................................UAAGAUCAAGUUCAUGGUAUUCa..................... len:23 al:642
...................................................UAAGAUCAAGUUCAUGGUAgUCU..................... len:23 al:4
...................................................UAAGAUCAAGUUCAUGGUAUUCU..................... len:23 al:21087
...................................................UAAGAUCAAGUUCAUGGUAUUCcU.................... len:24 al:2
...................................................UAAGAUCAAGUUCAUGGUAUUCg..................... len:23 al:127
...................................................UAAGAUCAAGUUCAUGcUAUUCU..................... len:23 al:1
...................................................UAAGAUCAAGUUCAUGGUAU........................ len:20 al:16
...................................................UAAGAUCAAGUUCAaGGUAUUC...................... len:22 al:1
...................................................UAAGAUCcAGUUCAUGGUAUUCU..................... len:23 al:9
...................................................UAAGAUCAAGUUCAUGGUAUUCUUu................... len:25 al:24
...................................................UAAGgUCAAGUUCAUGGUAUUC...................... len:22 al:6
...................................................UAAGAUCAAGUUCAaGGUAUUCU..................... len:23 al:9
...................................................UAAGAUCAAGUUCAUGGa.......................... len:18 al:15
...................................................UAAGAUCAAGUUCAUGGUg......................... len:19 al:1
...................................................UAAGAUCAAGUUCAUGGUAUcCU..................... len:23 al:33
...................................................UAAGAUCAAGUUCAUGGUAUgCU..................... len:23 al:4
...................................................UAAGAUCAAGUUuAUGGUAUUC...................... len:22 al:1
...................................................UAAGAUCAAGUUCAUGGUAUUuU..................... len:23 al:13
...................................................cAAGAUCAAGUUCAUGGUAUU....................... len:21 al:1
...................................................UAAGAUCAAGcUCAUGGUAU........................ len:20 al:2
...................................................UAAGAaCAAGUUCAUGGUAUUC...................... len:22 al:1
...................................................UAAGAUCAAGUUCuUGGUAUUCU..................... len:23 al:2
...................................................aAAGAUCAAGUUCAUGGUAUUC...................... len:22 al:3
...................................................UAAGAUCAAGUUCAUGGUgUUCU..................... len:23 al:60
....................................................uAGAUCAAGUUCAUGGUAUUCU..................... len:22 al:1
........................................................UCAAGUUCAUGGUAUUCU..................... len:18 al:2
...............................................................CAUGGUAUUCUUGUGAUGUGGUUUUUCACU.. len:30 al:1