Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000021:4351817-4351909 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5267.ps.pdf
Locus Name: Cluster_5267
GAUUAUCAACCUGGAUAACUGGACUGAUAUUCACCAAGUGAUUAAUAUUUACUCAUUUGCUGAUUAUCAGACCAGUCACUAGGCAUCUAGCUC
.........(((((...(((((.((((((.(((.(((((((.(((...))).))))))).))).)))))).)))))..))))).......... (-30.20)
.AUUAUCAACCUGGAUAACUGG....................................................................... len:21 al:1
............GGAUAACUGGACUGAUAUUCACCAAGUGAUU.................................................. len:31 al:4
..................CUGGACUGAUAUUCACCAAGUGAUU.................................................. len:25 al:1
.....................GACUGAUAUUCACCAAGUGA.................................................... len:20 al:2
.....................GACUGAUAUUCACCAAGUGAUUA................................................. len:23 al:6
.....................GACUGAUAUUCACCAAGUGAUc.................................................. len:22 al:1
.....................GACUGAUAUUCACCAAGUGAUU.................................................. len:22 al:32
......................ACUGAUAUUCACCAAGUGu.................................................... len:19 al:1
......................ACUGAUAUUCACCAAGUGA.................................................... len:19 al:99
......................ACUGAUAUUCACCAAGUc..................................................... len:18 al:1
......................ACUGAUAUUCACCAgGUG..................................................... len:18 al:1
......................AuUGAUAUUCACCAAGUGAUU.................................................. len:21 al:1
......................ACUGAUAUUCACCAAG....................................................... len:16 al:1
......................ACUGAUAUUCACCAAGUGAUc.................................................. len:21 al:7
......................ACUGAUAUUCACCAAGUa..................................................... len:18 al:8
......................ACUGAUAUUCACCAAGUGAUa.................................................. len:21 al:1
......................ACUGAUgUUCACCAAGUGAUU.................................................. len:21 al:1
......................ACcGAUAUUCACCAAGUGA.................................................... len:19 al:1
......................ACcGAUAUUCACCAAGUG..................................................... len:18 al:3
......................ACUGAUAUUCgCCAAGUGA.................................................... len:19 al:1
......................ACUGAUAUUCACCAAGUGAUUA................................................. len:22 al:50
......................ACUGAUAUUCACCAAGUGAUUu................................................. len:22 al:1
......................ACUGAUAUcCACCAAGUG..................................................... len:18 al:2
......................ACUGAUAUUCACCAAGU...................................................... len:17 al:1
......................ACUGAUAUUCACCAAGUGAUU.................................................. len:21 al:205
......................ACUGAUAUUCACCAAGUG..................................................... len:18 al:157
......................ACUGAUAUUCACCAAGUGg.................................................... len:19 al:1
......................ACUGAUAUUCACCAAa....................................................... len:16 al:2
......................ACUGAUAUUCACCAAGUu..................................................... len:18 al:2
......................ACUGgUAUUCACCAAGUG..................................................... len:18 al:1
......................ACUGAUAUUCACCAuGUGA.................................................... len:19 al:1
......................ACUGAUAUUCACCAAGcG..................................................... len:18 al:1
......................ACUGAUAUUCgCCAAGUGAUU.................................................. len:21 al:1
......................ACUGAUAUUCgCCAAGUG..................................................... len:18 al:2
......................ACUGAUAUUCACCAAGcGAUUA................................................. len:22 al:2
......................ACUGAUAUcCACCAAGUGAUU.................................................. len:21 al:1
.......................CUGAUAUUCACCAAGUGg.................................................... len:18 al:1
.......................CUGAUAUUCACCAAGUGAUU.................................................. len:20 al:3
.......................CUGAUAUUCACCAAGUGA.................................................... len:18 al:1
.......................CUGAUAUUCACCAAGUGAUc.................................................. len:20 al:1
.......................CUGAUAUUCACCAAGUG..................................................... len:17 al:1
.......................CUGgUAUUCACCAAGUGA.................................................... len:18 al:1
........................UGAUAUUCACCAAGUGA.................................................... len:17 al:1
..........................................UAAUAUUUACUCAUUUGCUGAUUAUCAGACC.................... len:31 al:1
...........................................AAUAUUUACUCAUUUGCcGAUUAUCAGACC.................... len:30 al:1
..................................................ACUCAUUUGCUGAUUAUCAGACCA................... len:24 al:1
...................................................CUCAUUUGCUGAUUAUC......................... len:17 al:2
...................................................CUCAUUcGCUGAUUAUCAGAC..................... len:21 al:1
...................................................CUCAUUUGCUGAUUAcCAGACC.................... len:22 al:3
...................................................CUCAUUUGCUGAUUAUCAGACCAc.................. len:24 al:2
...................................................CUCAUUUGCUGAUUAUCAGACCAa.................. len:24 al:2
...................................................CUCAUUcGCUGAUUAUCAGACC.................... len:22 al:1
...................................................CUCAUUUGCUGAUUAUCAGA...................... len:20 al:3
...................................................CUCAUUUGCUGAUUAUCAGACCu................... len:23 al:3
...................................................CUCAUUUGCUGAUUAUCAGACCuGU................. len:25 al:1
...................................................CUCAUUUGCUGAUUAUCAGACC.................... len:22 al:110
...................................................CUCAUUUGCUGAUcAUCAGACCA................... len:23 al:1
...................................................CUCAUUUGCUGAUUAUCA........................ len:18 al:4
...................................................CUCAUUUGCUGAUUAUCAGAC..................... len:21 al:49
...................................................CUCAUUUGCUGAUcAUCAGACC.................... len:22 al:1
...................................................CUCAUUUGCUGAUUAUCAu....................... len:19 al:1
...................................................CUCAUUUGCUGAUUAUCAGACCAuU................. len:25 al:4
...................................................CUCAUUUGCUGAUUAUCAGACCg................... len:23 al:2
...................................................CUCAUUUGCUGAUUAUCAGAu..................... len:21 al:2
...................................................CUCAUUUGCUGAUUAUCAGACCA................... len:23 al:52
...................................................CUCAUUUGCUGAUUAUCAGgCC.................... len:22 al:1
...................................................CUCAUUUGCUGAUUAUCAGACa.................... len:22 al:2
...................................................CUCAUUUGCcGAUUAUCAGAC..................... len:21 al:1
...................................................CUCAUUUGCUGAUUAUCAGACu.................... len:22 al:20
...................................................CUCAUcUGCUGAUUAUCAGACCA................... len:23 al:2
...................................................CUCAcUUGCUGAUUAUCAGACCA................... len:23 al:1
...................................................uUCAUUUGCUGAUUAUCAGAC..................... len:21 al:1
...................................................CUCAUUUGCUGAUUAUCAGACCAu.................. len:24 al:19
....................................................UCAUUUGCUGAUUAUCAGAC..................... len:20 al:1
....................................................UCAUUUGCUGAUUAUCAGACCAu.................. len:23 al:1
....................................................UCAUUUGCUGAUUAUCAGACCA................... len:22 al:3
....................................................UCAUUUGCUGAUUAUCAGACC.................... len:21 al:1
......................................................AUUUGCUGAUUAUCAGACC.................... len:19 al:2