Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000021:1499866-1499959 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5226.ps.pdf
Locus Name: Cluster_5226
UCAGCUCUCAGUUUUAUCAUGAUGAAAUUCUUCAAUUACUCUCUUUAUGCAGUGUGAUUGGAGACUUUUAUCGUGAUCUGGAGCAUUUGCACAA
...((((.(((....((((((((((((.(((((((((((.(((.....).)).))))))))))).))))))))))))))))))).......... (-36.20)
....................GAUGAAAUUCUUCAAUUACUCU.................................................... len:22 al:8
.....................AUGAAAUUCUUCAAUUACUCUC................................................... len:22 al:1
........................................CUCUUUAUGCAGUGUGAUUGGAGACU............................ len:26 al:3
...........................................UUUAUGCAGUGUGAUUGGAGACUUUUAUCGU.................... len:31 al:1
............................................UUAUGCAGUGUGAUUGGAGACUUUUAUC...................... len:28 al:1
..............................................AUGCAGUGUGAUUGGAGACUUUUAUCGU.................... len:28 al:2
...............................................UGCAGUGUGAUUGGAGACUUUUAUCGU.................... len:27 al:1
..................................................AGUGUGAUUGGAGACUUUUAUC...................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUuGU.................... len:22 al:18
....................................................UGUGAUUGGAGACUUUUAUCGa.................... len:22 al:43
....................................................UGUGcUUGGAGACUUUUAUCGU.................... len:22 al:4
....................................................UGUGAUUGGAGACcUUUAUCGU.................... len:22 al:21
....................................................UGUGAUUGGAGACUUUUAUCGU.................... len:22 al:4590
....................................................UGcGAUUGGAGACUUUUAUCGU.................... len:22 al:13
....................................................UGUGAUUuGAGACUUUUAUCGU.................... len:22 al:3
....................................................gGUGAUUGGAGACUUUUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGACUUUcAUCGU.................... len:22 al:10
....................................................UGUGAUUGGAGACUUUUAUCaU.................... len:22 al:98
....................................................UGUGAUUGGAGACUUUUAcCGU.................... len:22 al:5
....................................................UGUGAUUGGAGACUUcUAUCGU.................... len:22 al:5
....................................................UGUGAUUGGAGACUUUUAUCGUG................... len:23 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUu................... len:23 al:287
....................................................UGUGAUUGGAGACUUUUAcCG..................... len:21 al:1
....................................................UGUGAUUGGAGACUcUUAUCGU.................... len:22 al:9
....................................................UaUGAUUGGAGACUUUUAUCG..................... len:21 al:2
....................................................UGUGAUUGGAGgCUUUUAUCGU.................... len:22 al:14
....................................................UGUGAUUGGgGACUUUUAUCGU.................... len:22 al:22
....................................................UGUGAUUGGAGACUUUUAUCGUaA.................. len:24 al:2
....................................................UGUGAUUGGAGACUUUUgUCGU.................... len:22 al:3
....................................................UGUGAUUGGAGACUcUUA........................ len:18 al:1
....................................................UGUGAUUGGAGACUUUUAUu...................... len:20 al:2
....................................................UGUGAUUGGAGACUUUUAUCGUuA.................. len:24 al:19
....................................................UGUaAUUGGAGACUUUUAUCGU.................... len:22 al:2
....................................................UGUGAcUGGAGACUUUUAUCGU.................... len:22 al:9
....................................................UGUGAUUGGcGACUUUUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGACUU........................... len:15 al:3
....................................................UGUGAUUGGAGACUUU.......................... len:16 al:12
....................................................UGUGAUUGGAGACUUUUAUCcU.................... len:22 al:2
....................................................UGUGAUUGGAaACUUUUAUCGU.................... len:22 al:2
....................................................cGUGAUUGGAGACUUUUAUCGU.................... len:22 al:22
....................................................UGUGAUUGGAGACUUUUAUCGc.................... len:22 al:400
....................................................aGUGAUUGGAGACUUUUAUCGU.................... len:22 al:9
....................................................UGUGAUUGGAGACUUUUAUCG..................... len:21 al:54
....................................................UGUGAUUGGAGACUUUUAUCGUc................... len:23 al:33
....................................................UGUGAUUaGAGACUUUUAUCGU.................... len:22 al:2
....................................................UGUGAUUGGAGACUUUUAUCGg.................... len:22 al:30
....................................................UGUGAUUGGAGACUUUU......................... len:17 al:3
....................................................UGUGcUUGGAGACUUU.......................... len:16 al:1
....................................................UGUGAUUGaAGACUUUUAUCGU.................... len:22 al:2
....................................................UGUGAUUGGgGACUUUUA........................ len:18 al:2
....................................................UGUGAUUGGAGACUUaUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUC...................... len:20 al:142
....................................................UGgGAUUGGAGACUUUUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUGu.................. len:24 al:12
....................................................UGUGAUUGGAGACUgUUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGgCUUUUA........................ len:18 al:1
....................................................UGUGAUUGGAGACUUUUAUCu..................... len:21 al:1
....................................................UGUGAUcGGAGACUUUUAUCGU.................... len:22 al:4
....................................................UaUGAUUGGAGACUUUUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGACUUUUAUCGUa................... len:23 al:73
....................................................UGUGAUUGGAGACUUUUA........................ len:18 al:99
....................................................UGUGgUUGGAGACUUUUAUCGU.................... len:22 al:10
....................................................UGUGAUUGGuGACUUUUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGACUUcUAUC...................... len:20 al:1
....................................................UGUGAUUGGAGACUUcUA........................ len:18 al:1
....................................................UGUGAcUGGAGACUUUUAUC...................... len:20 al:1
....................................................UGUGAUUGGAGACUUUUAUa...................... len:20 al:5
....................................................UGUGAUUGGAGACUUUUAU....................... len:19 al:30
....................................................UGUGAUUGGAGACaUUUAUCGU.................... len:22 al:1
....................................................UGUGAUUGGAGACUaUUAUCGU.................... len:22 al:2
....................................................UGUGAUUGuAGACUUUUAUCGU.................... len:22 al:2
....................................................cGUGAUUGGAGACUUUUAUC...................... len:20 al:1
....................................................UGUGAUUGGAGACUUUUAUCa..................... len:21 al:11
.....................................................GUGAUUGGAGACUUUUAUCG..................... len:20 al:1
.....................................................GUGAUUGGAGACUUUUAUCGU.................... len:21 al:3
.....................................................GUGAUUGGAGACUUUUAUC...................... len:19 al:2
......................................................UGAUUGGAGACUcUUAUCGU.................... len:20 al:1
......................................................UGAUUGGAGACUUUUAUCG..................... len:19 al:1
......................................................UGAUUGGAGACUUUUAUCGc.................... len:20 al:1
......................................................UGAUUGGAGACUUUUAUCGUa................... len:21 al:1
......................................................UGAUUGGAGACUUUUAUC...................... len:18 al:1
......................................................UGAUUGGAGACUUUUAUCGU.................... len:20 al:10
......................................................UGAUUGGAGACUUUUAUCa..................... len:19 al:1