Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000020:2454367-2454459 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5123.ps.pdf
Locus Name: Cluster_5123
UCAUGCAAAAAAUUAACUCAGUGAUAACAAUGAUGCUGUAUAAUUUUUAUCCAGCACCAAUGUUAUUGUUAAGUUGAUUUUUAUUUUGUUGAG
(((.((((((((((((((.((((((((((.((.(((((.((((...)))).))))).)).)))))))))).))))))))....))))))))). (-24.70)
....................aUGAUAACAAUGAUGCUGUAU.................................................... len:21 al:1
....................aUGAUAACAAUGAUGCUGUA..................................................... len:20 al:9
....................aUGAUAACAAUGAUGCUGUAUA................................................... len:22 al:99
.....................UGAUAACAAUGAUGCUGUAUA................................................... len:21 al:1
.......................................AUAAUUUUUAUCCAGCACCAAUGUUAUUGUU....................... len:31 al:1
........................................UAAUUUUUAUCCAGCACCAAUGUUAU........................... len:26 al:1
..........................................AUUUUUAUCCAGCACCAAUGUUAUUG......................... len:26 al:1
.................................................UCCAGCACCAAUGUUAUUGUUg...................... len:22 al:1
.................................................UCCAGCgCCAAUGUUAUUGUU....................... len:21 al:1
.................................................UCCAGCACCAAUGUUAUUGUUu...................... len:22 al:6
.................................................UCCAGCACCAAcGUUAUUGUUA...................... len:22 al:1
.................................................UCCAGCACCAAUGUUAUUGUUAA..................... len:23 al:3
.................................................UCCAGCACCAAUGUUAUcGUUA...................... len:22 al:3
.................................................UCCAGCACCAAUGUcAUUGUUA...................... len:22 al:1
.................................................UCCAGCACCAAUGUUAUUGaU....................... len:21 al:1
.................................................UCCgGCACCAAUGUUAUUGUU....................... len:21 al:1
.................................................UCCAGCACCAAUGUUAcUGUUA...................... len:22 al:1
.................................................UCCAGCACCAAUGUUAUUGUUA...................... len:22 al:135
.................................................UCCAGCcCCAAUGUUAUUGUUA...................... len:22 al:1
.................................................UCCAGCACCAAUGUUAUUGUUAc..................... len:23 al:2
.................................................cCCAGCACCAAUGUUAUUGUUA...................... len:22 al:1
.................................................UCCAGCACCAgUGUUAUUGUUA...................... len:22 al:1
.................................................UCCAGCACCAAUGUUAUUGUc....................... len:21 al:24
.................................................UCCAGCACCAAUGUUAUUGc........................ len:20 al:2
.................................................UCCAGCACCAAUGUUAUUGUU....................... len:21 al:265
.................................................UCCAGCACCgAUGUUAUUGUU....................... len:21 al:2
.................................................UCCAGCACCAAUGUUAUUG......................... len:19 al:3
.................................................UaCAGCACCAAUGUUAUUGUUA...................... len:22 al:1
.................................................UCCgGCACCAAUGUUAUUGU........................ len:20 al:1
.................................................UCCAGCACCAAUGUUAUUGgU....................... len:21 al:1
.................................................UCCAGCACCAAUGUUAUc.......................... len:18 al:1
.................................................UCCAGCACuAAUGUUAUUGU........................ len:20 al:1
.................................................UCCAGCgCCAAUGUUAUU.......................... len:18 al:1
.................................................UCCAGCACCAAUGUUAUUGUg....................... len:21 al:1
.................................................UCCAGCACCAAUGUUAUUuUU....................... len:21 al:2
.................................................UCCAGCACCAAUGUUAUU.......................... len:18 al:48
.................................................UCCAGCACCAAUGUUAUUGU........................ len:20 al:10
.................................................UCCAGCACCAAUcUUAUUGUU....................... len:21 al:1
.................................................UCCAGCACCAAUGUUAUUGUcA...................... len:22 al:1
.................................................UCCAGCACCAAUGUUAUUGUUAu..................... len:23 al:24
.................................................UCCAGCACCAgUGUUAUUGUU....................... len:21 al:1
.................................................UCCAGCACCAAUGUcAUUGUU....................... len:21 al:2
.................................................UCCAGCACCAAUGUU............................. len:15 al:1
.................................................UCCAGCACCAAUGUUAUUGUa....................... len:21 al:2
..................................................CCAGCACCAAUGUUAUUGUUA...................... len:21 al:1
...................................................CAGCACCAAUGUUAUUGUUA...................... len:20 al:1
...................................................CAGCACCAAUGUUAUUGU........................ len:18 al:1
.......................................................................AGUUGAUUUUUAUUUUGUUGA. len:21 al:3