Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000018:6857839-6857933 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4827.ps.pdf
Locus Name: Cluster_4827
CUCAAAAAAGCAUUGUAAAACUCUCCGAACAGUUUUAGUCUGAUGUUUACACCAGACUGAUACUUGUUUGGAAUAUUUUACACUUGCAAAAAGUC
.........(((.(((((((...((((((((((.((((((((.((....)).)))))))).)).))))))))...)))))))..)))........ (-31.10)
.UCAAAAAAGCAUUGUAAAACc......................................................................... len:21 al:1
.UCAAAAAAGCAUUGUAAAACU......................................................................... len:21 al:1
..CAAAAAAGCAUUGUAAAACUC........................................................................ len:21 al:1
....AAAAAGCAUUGUAAAACUCUCCG.................................................................... len:23 al:1
............UUGUAAAACUCUCCGAACA................................................................ len:19 al:1
....................CUCUCCGAACAGUUUUAGUCU...................................................... len:21 al:3
....................CUCUCCGAACAGUUUUAGUCUGAUG.................................................. len:25 al:1
....................CUCaCCGAACAGUUUUAGUCUGAUGUUUAC............................................. len:30 al:2
....................CUCUCCGAACAGUUUUAGUCUGA.................................................... len:23 al:2
.....................UCUCCGgACAGUUUUAGUCUGAUG.................................................. len:24 al:1
.....................UCUCCGAACAGUUUUAGUaU...................................................... len:20 al:2
.....................UCUCCGAACAGUUUUAGc........................................................ len:18 al:2
.....................cCUCCGAACAGUUUUAGUCUG..................................................... len:21 al:3
.....................UCUCCGAACAGUUUUAGUCUGAUGUUUACg............................................ len:30 al:1
.....................UCUCCGAACAGUUUUAGUC....................................................... len:19 al:29
.....................UCUCCGAACAGUUUUAGUCUGAUGUUUAC............................................. len:29 al:2
.....................UCUCCGAACAGUUUUAGUCc...................................................... len:20 al:10
.....................UCUCCGAACAGUUUUAGUCUGAUG.................................................. len:24 al:301
.....................UCUCCGAACAGgUUUAGUCUGAUG.................................................. len:24 al:1
.....................UCUCCGAACAGUUUUAGUCUGAUGUUU............................................... len:27 al:3
.....................UCUCCGAACAGUUUUAGUCUGAUu.................................................. len:24 al:10
.....................cCUCCGAACAGUUUUAGUC....................................................... len:19 al:1
.....................UCUCCGAACAGUUUUAGUCUGAUGUUUACA............................................ len:30 al:3
.....................UCUCCGAACAGUUUUAGUCUGAUaU................................................. len:25 al:1
.....................UCUCCGAACAGUUUUAGUCUGu.................................................... len:22 al:1
.....................UCUCCGAACAGUUUU........................................................... len:15 al:1
.....................cCUCCGAACAGUUUUAGUCUGAUGUU................................................ len:26 al:1
.....................cCUCCGAACAGUUUUAGUCUGAUG.................................................. len:24 al:1
.....................UCUCCGAACAGUUUUAGUCUGAUGUUUACAC........................................... len:31 al:14
.....................UCUCCGAACAGUUUUAGUuUGAUG.................................................. len:24 al:1
.....................UCUCCGAACAGUUUUAGUCUG..................................................... len:21 al:14
.....................UCUCCGgACAGUUUUAGUCUGA.................................................... len:22 al:1
.....................UCUCCGAACAGUUUUAGUCcGAUG.................................................. len:24 al:2
.....................UuUCCGAACAGUUUUAGUCU...................................................... len:20 al:1
.....................UCUCCGAgCAGUUUUAGUCUGAUG.................................................. len:24 al:1
.....................UCUCCGAACAGUUUUAGUCa...................................................... len:20 al:1
.....................UCUCCGAACAGUUUUAGUCUGAU................................................... len:23 al:15
.....................UCUCCGcACAGUUUUAGUCUGAUG.................................................. len:24 al:2
.....................UCUCCGAACAGUUUUAGUCUGA.................................................... len:22 al:26
.....................UCUCCGAACAGUUUUAGUCUGAUGUU................................................ len:26 al:4
.....................UCUCCGAACAGUUUUAGcCUGA.................................................... len:22 al:1
.....................UCUCCGAACAGUUUUAGUCUGAUa.................................................. len:24 al:25
.....................UCUCCGAAuAGUUUUAGUCUGAUG.................................................. len:24 al:1
.....................UCUCCGAACAGUUUUAGUCUGg.................................................... len:22 al:1
.....................UCUCCGAACAGUUUUAGUu....................................................... len:19 al:2
.....................UCUCCGAACAGUUUUAGcCUG..................................................... len:21 al:3
.....................UCUCCGAACAGUUUUAGUCUGAUGUUUACAu........................................... len:31 al:1
.....................aCUCCGAACAGUUUUAGUCUGAUGUU................................................ len:26 al:1
.....................UCUCCGAACAGUUUUAGUCUGAUGU................................................. len:25 al:7
.....................UCUCCGAACAGUUUUAGUCUa..................................................... len:21 al:1
.....................UCUCCGAACAGUUUUAGUCg...................................................... len:20 al:4
.....................UCUCCGAACAGUcUUAGUCUGAUG.................................................. len:24 al:1
.....................UCUCCGAACAGUUUUAGUCUGAUGUUUACgC........................................... len:31 al:7
.....................UCUCCGAACAGUUUUAGUCU...................................................... len:20 al:76
.....................UCUCCGAACgGUUUUAGUCUGAUGUU................................................ len:26 al:1
.....................UCUCCGAACAGUUUUAGU........................................................ len:18 al:9
......................CUCCGAACAGUUUUgGUCUGA.................................................... len:21 al:1
......................CUCCGAACAGcUUUAGUCUGAUGU................................................. len:24 al:7
......................CcCCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:37
......................CUCCGAACAGUUUUcGUCU...................................................... len:19 al:1
......................CUuCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:11
......................CUCCGAACAGUUUUAuUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGUCUGg.................................................... len:21 al:1
......................CUCaGAACAGUUUUAGUCUG..................................................... len:20 al:1
......................CUCCGAACgGUUUUAGUCU...................................................... len:19 al:1
......................CUCCGAACAGUUUUAGUCUc..................................................... len:20 al:2
......................CUCCGAACAGUUUUAGUCaGAUGU................................................. len:24 al:1
......................CUCCGAACAGUUUUAGUCc...................................................... len:19 al:20
......................CUCCGAACAaUUUUAGUCUGAUG.................................................. len:23 al:5
......................CUCCGAACAGUUUUAGUCUa..................................................... len:20 al:26
......................CUCCGAACAGUUUUAGUCUGAgG.................................................. len:23 al:6
......................CUCCGAACAGUUUUAGUCUGAUGaUU............................................... len:26 al:22
......................CUCCGgACAGUUUUAGUCUGAUGUUUACAC........................................... len:30 al:1
......................CUCCGuACAGUUUUAGUCU...................................................... len:19 al:1
......................CUCCGAACAGUUUUAGUCgGAUG.................................................. len:23 al:2
......................CUCCGAcCAGUUUUAGUCUGAUGU................................................. len:24 al:2
......................CUCCGAuCAGUUUUAGUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGUCUGAUGg................................................. len:24 al:15
......................CUCCGAACAGaUUUAGUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGUCUGAUaU................................................. len:24 al:22
......................CUCuGAACAGUUUUAGUCUGAUGU................................................. len:24 al:2
......................CUaCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUgUUAGUCUGAUG.................................................. len:23 al:3
......................CUCCGAACAGUUUUcGUC....................................................... len:18 al:1
......................CUCCGAACAGUUUUAGUuUGAUG.................................................. len:23 al:7
......................CUCCGAACgGUUUUAGUCUGAUG.................................................. len:23 al:34
......................CUCCGAgCAGUUUUAGUCU...................................................... len:19 al:2
......................CUCCGAACcGUUUUAGUCUGAUG.................................................. len:23 al:8
......................aUCCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:6
......................CUCCGAACAGUUUUAGUCUGAUGUUUAC............................................. len:28 al:2
......................CUCCGgACAGUUUUAGUC....................................................... len:18 al:2
......................CUCCGAACAGUUUUAGUCUGAUGUUU............................................... len:26 al:11
......................CUCCGAACAGUUUUAGUCUGAaGUU................................................ len:25 al:1
......................CUCCGAACAGUcUUAGUCUGAU................................................... len:22 al:1
......................CUCCGAACAGUUcUAGUCUGAUG.................................................. len:23 al:24
......................CUCCGAACAGUUUUAGUuUGAU................................................... len:22 al:1
......................CUCCGAACAGUUaUAGUCUGAUG.................................................. len:23 al:6
......................CUCCGAACAGUUUUAGUCcGAUG.................................................. len:23 al:33
......................CUuCGAACAGUUUUAGUCUGAU................................................... len:22 al:1
......................CUCCGAACAGUcUUAGUCUGAUG.................................................. len:23 al:14
......................CgCCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:2
......................CUCCGAACAGUUUUAGUCUGgU................................................... len:22 al:6
......................CUCCGAACAGUUUUAGUg....................................................... len:18 al:1
......................CUCCGAgCAGUUUUAGUCUGAU................................................... len:22 al:3
......................CUCCGAACAGUUgUAGUCUGAUG.................................................. len:23 al:2
......................CUCCGAACAGUUUUAGUCUGAUa.................................................. len:23 al:788
......................uUCCGAACAGUUUUAGUC....................................................... len:18 al:1
......................CUCCGAACAGUUUUAGUCUaAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUUaA.............................................. len:27 al:1
......................CUCCGAACAGUUUUcGUCUGAUGU................................................. len:24 al:1
......................CUCCGAACAGUcUUAGUC....................................................... len:18 al:1
......................CUCCGAACAGUUUUAGUCcG..................................................... len:20 al:3
......................CUCCGAACAGUUUUAGUCUGAUu.................................................. len:23 al:498
......................CUCCGAACAGUUUUAGUC....................................................... len:18 al:457
......................CUCCGAgCAGUUUUAGUC....................................................... len:18 al:2
......................uUCCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:12
......................CcCCGAACAGUUUUAGUCU...................................................... len:19 al:1
......................CUCCGAACAGUUUUAGUCUGc.................................................... len:21 al:2
......................CUCCGAACAGUUUUAGUCUGAUGUUUACAC........................................... len:30 al:12
......................CUCCGAACAGUUUUAGUCUGAUGUUUACgC........................................... len:30 al:5
......................CUCCGAACAGUUUUAGUaU...................................................... len:19 al:1
......................CUCCGcACAGUUUUAGUCUGAUG.................................................. len:23 al:7
......................CUCCGAACAGUUcUAGUCUGA.................................................... len:21 al:1
......................CUCCGAACAGUgUUAGUCUGAUGUUUACACC.......................................... len:31 al:1
......................CUCCGAACAGUUUUAGUCUGu.................................................... len:21 al:15
......................CUCCGAACAGUUUUAGUCUGAUuUU................................................ len:25 al:1
......................CUCgGAACAGUUUUAGUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUaUA.............................................. len:27 al:3
......................CUCCGAACAGUUUUAGcC....................................................... len:18 al:1
......................CUCCGAACgGUUUUAGUC....................................................... len:18 al:1
......................CUCCGAACAGUUUUAGUCg...................................................... len:19 al:9
......................CUCCGAACAGUcUUAGUCUGAUGU................................................. len:24 al:8
......................CUCCGAACAGUUUUAGUCcGAUGU................................................. len:24 al:7
......................CUCCGAAuAGUUUUAGUCUGAUG.................................................. len:23 al:4
......................CUCCGAACAGUUUgAGUCUGAUG.................................................. len:23 al:2
......................CUCCGAACAGUUUUAGUCUGAUGaUUA.............................................. len:27 al:2
......................CUCCGgACAGUUUUAGUCUG..................................................... len:20 al:3
......................CUCCGAACAGUUUUAGaCUGAUG.................................................. len:23 al:3
......................CUCCaAACAGUUUUAGUCU...................................................... len:19 al:1
......................CUCCaAACAGUUUUAGUCUG..................................................... len:20 al:1
......................CUCCGAACAGUUUUAGUCUGAUGU................................................. len:24 al:1625
......................CUCCGAACAGUUUUAGUCUGgUG.................................................. len:23 al:48
......................CUCCGAACAGUUUUAGUuUG..................................................... len:20 al:1
......................CUCCGAACAGUUUUAGaCUGAUGU................................................. len:24 al:1
......................CUCCGgACAGUUUUAGUCUGAUGU................................................. len:24 al:3
......................CUCCGAACAGUUcUAGUCUG..................................................... len:20 al:1
......................CUCCGAACAGUUUUAGUCUG..................................................... len:20 al:456
......................CUCCGAACAGUUUUAaUCUGAUG.................................................. len:23 al:5
......................CaCCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:5
......................CUCCaAACAGUUUUAGUCUGAU................................................... len:22 al:1
......................CUCCGAACAGUUUUAGcCUGAUG.................................................. len:23 al:29
......................CUCCGAACAGUUUUAGUCUGAUGUUUACACC.......................................... len:31 al:14
......................CUCCGAACAGUUUUAGUCUGAUGa................................................. len:24 al:197
......................CUCCGAcCAGUUUUAGUC....................................................... len:18 al:3
......................CUCCGAACgGUUUUAGUCUGAUGU................................................. len:24 al:6
......................CUCCGAACAGgUUUAGUCUGAUGU................................................. len:24 al:1
......................CUCCGAAaAGUUUUAGUC....................................................... len:18 al:1
......................CUCCGAgCAGUUUUAGUCUGAUG.................................................. len:23 al:46
......................CUCCGAACAGUUUUuGUCUGAUG.................................................. len:23 al:5
......................CUCCGAACAGUUUUgGUCUGAU................................................... len:22 al:1
......................CUCCGAACAGUUUUcGUCUG..................................................... len:20 al:2
......................CUCCGAACcGUUUUAGUCUGAUGU................................................. len:24 al:1
......................CUCCGAACAGUUcUAGUCUGAUGU................................................. len:24 al:2
......................CUCCGAACAGUUUUAGUCUGAaG.................................................. len:23 al:6
......................CUCCGAACAGUUUcAGUCUGAUG.................................................. len:23 al:16
......................CUCCGAACAGUUUUAGU........................................................ len:17 al:3
......................CUCCGAACAGUUUUAGUCUGgUGU................................................. len:24 al:3
......................CUCCGAACAGUUUUAGUCaGAUG.................................................. len:23 al:4
......................CUCCGAACAGUUUUAGUCa...................................................... len:19 al:7
......................CUCCGAcCAGUUUUAGUCUGAUG.................................................. len:23 al:13
......................CUCCGAACAGUUUUAGUCUGA.................................................... len:21 al:362
......................CUCCGAACAGUUUUgGUCUGAUG.................................................. len:23 al:23
......................CUCCGAACAGUUUUAGUCUGAUuUUU............................................... len:26 al:1
......................CUCCaAACAGUUUUAGUCUGAUG.................................................. len:23 al:9
......................CUCCGAACAGUUUUAGUCUGAUGcU................................................ len:25 al:2
......................CUCCGuACAGUUUUAGUCUGAUG.................................................. len:23 al:2
......................CUCCGAACAGUUUUAGUCUGAUGUU................................................ len:25 al:78
......................CUCCGAACAGUUUUAGUCUGAa................................................... len:22 al:2
......................CUCCGAACAGUUUUAGcCUG..................................................... len:20 al:1
......................CUCCGAACAGUUUUAGUCUu..................................................... len:20 al:2
......................CUCuGAACAGUUUUAGUCUGAUG.................................................. len:23 al:13
......................CUCCGgACAGUUUUAGUCUGA.................................................... len:21 al:4
......................CUCCGAACAGUUUUAGUCUGAc................................................... len:22 al:26
......................CUCCGAACAGUUUcAGUCUGAUGU................................................. len:24 al:2
......................CUCCGgACAGUUUUAGUCUGAUG.................................................. len:23 al:36
......................CUCCGAACcGUUUUAGUCU...................................................... len:19 al:2
......................CUCCGAAaAGUUUUAGUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGcCUGA.................................................... len:21 al:1
......................CUCCGAACAGUUUUAGUCUGAUGc................................................. len:24 al:152
......................CaCCGAACAGUUUUAGUCUGAUGU................................................. len:24 al:1
......................CUCCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:12254
......................CUCCGAACAGUUUUAGUaUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGc........................................................ len:17 al:1
......................CUCCGAACAGUUUUAGUa....................................................... len:18 al:6
......................CUCCGAgCAGUUUUAGUCUG..................................................... len:20 al:2
......................CUCCGAACAGUUUUAGUCUGuUG.................................................. len:23 al:1
......................uUCCGAACAGUUUUAGUCUGAUGU................................................. len:24 al:1
......................CUCCGAACAGcUUUAGUCU...................................................... len:19 al:1
......................CUCCGAACAGUUUUAGUu....................................................... len:18 al:15
......................CUCCGAACAGgUUUAGUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGUCUGAgGU................................................. len:24 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUUUACACa.......................................... len:31 al:4
......................CUCCGgACAGUUUUAGUCUGAUGUU................................................ len:25 al:1
......................CUCCGAACAGUUUUAGUCU...................................................... len:19 al:358
......................CUCCGAACAGUUUUAGUCUGAcGU................................................. len:24 al:1
......................gUCCGAACAGUUUUAGUCUGAUG.................................................. len:23 al:1
......................CUCCGAACAGUUUUAGUCUGAUc.................................................. len:23 al:41
......................CUCCGAACAGUUUUAGUCUGAUGUgU............................................... len:26 al:3
......................CUCCGAACAGUUUUAGUCUGAUGUUUA.............................................. len:27 al:2
......................CUCCGAACAGcUUUAGUCUG..................................................... len:20 al:1
......................CUCCGAACAGUUUUAGUCUGAg................................................... len:22 al:3
......................CUCCGAACAGUUcUAGUCUGAU................................................... len:22 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUaU............................................... len:26 al:2
......................CUCCGAACAGUUUUAGUCUGAU................................................... len:22 al:413
......................CUCCGAACuGUUUUAGUCUGAUG.................................................. len:23 al:3
......................CUCCGAACAGUUUUAGUCUGuUGU................................................. len:24 al:1
......................CcCCGAACAGUUUUAGUCUGAUGU................................................. len:24 al:7
......................CUCCGAACgGUUUUAGUCUGAUGUUU............................................... len:26 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUUUACgCC.......................................... len:31 al:4
......................CUCCGAACAGgUUUAGUCUGAU................................................... len:22 al:1
......................CcCCGAACAGUUUUAGUCUGA.................................................... len:21 al:1
......................CUCCGAACAGUcUUAGUCUGA.................................................... len:21 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUUUACu............................................ len:29 al:2
......................CUCCGAACAGcUUUAGUCUGAU................................................... len:22 al:4
......................CUCCGAACAGUUUUAGUCUGAcGUU................................................ len:25 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUUUACACu.......................................... len:31 al:2
......................CUCCGAACAGUUUUAGUCUGAcG.................................................. len:23 al:32
......................CUCCGAACAGUUUUAGUCUGAUGUa................................................ len:25 al:9
......................CUCCGAACAGUUUUAGgCUGA.................................................... len:21 al:1
......................CUCCGAACAGUUUUAGUCUGAUGgU................................................ len:25 al:1
......................CUCCGAACAGUUUUgGUC....................................................... len:18 al:1
......................CUCCGAACAGUUUUAGcCUGAUGU................................................. len:24 al:3
......................CUCCGAACAGUUUUcGUCUGAUG.................................................. len:23 al:12
......................CUCCGgACAGUUUUAGUCUGAU................................................... len:22 al:1
......................CUCCGAACAGUUUUgGUCUGAUGU................................................. len:24 al:3
......................CUCCGAACAGUUUUAGUCaGA.................................................... len:21 al:1
......................uUCCGAACAGUUUUAGUCUG..................................................... len:20 al:1
......................CUCCGAACAGUUUUAaUCUGAU................................................... len:22 al:1
......................uUCCGAACAGUUUUAGUCUGA.................................................... len:21 al:1
......................CUCCGAACAGcUUUAGUC....................................................... len:18 al:2
......................CUCCGAACAGUUUUAGUCUGAUGaU................................................ len:25 al:18
......................CUCCGAACAGUUUUAGUuU...................................................... len:19 al:1
......................CUCCGAACAGUUUUAGUCaG..................................................... len:20 al:1
......................CUCuGAACAGUUUUAGUCUGA.................................................... len:21 al:1
......................CUCCGAACAGUUcUAGUCU...................................................... len:19 al:2
......................CUCaGAACAGUUUUAGUCUGAUG.................................................. len:23 al:2
......................CUCCGAACAGUUUUAGUCUGAUGUUa............................................... len:26 al:1
......................CUCCaAACAGUUUUAGUCUGAUGU................................................. len:24 al:2
......................CUCCGAACAGUUUUAGUCUGAUuU................................................. len:24 al:30
......................CUCCGAACAGUUUUAGUCUGAUGUg................................................ len:25 al:1
......................CUCCGAACAGUUUUAGUCUGAUGUc................................................ len:25 al:7
......................CUCaGAACAGUUUUAGUCUGAU................................................... len:22 al:1
......................CUCCGAgCAGUUUUAGUCUGAUGU................................................. len:24 al:9
......................CUCCGAACAGUUcUAGUC....................................................... len:18 al:1
......................CUCCGAACAGcUUUAGUCUGAUG.................................................. len:23 al:18
......................CUCCGAAaAGUUUUAGUCUG..................................................... len:20 al:1
.......................UCCGAACAGUUUUAGUCU...................................................... len:18 al:2
.......................UCCGAACAGUUUUAGUCUGA.................................................... len:20 al:2
.......................UCCGAACAGUUUUAGUCUGAUGUUUACgCCA......................................... len:31 al:2
.......................UCCGAACAGUUUUAGUCUGAUGa................................................. len:23 al:1
.......................UCCGAACAGUUUUAGUCUGAUGUUUACA............................................ len:28 al:1
.......................UCCGAACAGUUUUAGUCUGAUu.................................................. len:22 al:2
.......................UCCGAACAGUUUUAGUCUGAUG.................................................. len:22 al:67
.......................UCCGAACAGUUUUAGUCUaAUG.................................................. len:22 al:1
.......................UCCGAACAGUUUUAGUCUGAU................................................... len:21 al:2
.......................UCCGAACAGUUUUAGUCUGAUGUUUACACCA......................................... len:31 al:1
.......................cCCGAACAGUUUUAGUCUGAUG.................................................. len:22 al:1
.......................UCCGAACgGUUUUAGUCU...................................................... len:18 al:1
.......................UCCGAACAGUUUUAGUCUGAUGU................................................. len:23 al:8
.......................UCCGAACAGUUUUAGUCUG..................................................... len:19 al:8
.......................UCCGAACgGUUUUAGUCUGAUG.................................................. len:22 al:1
........................CCGAACAGUUUUAGUCUGAUGU................................................. len:22 al:1
........................CCGAACAGUUUUAGUCUGAUGUUUACACCA......................................... len:30 al:3
........................CCGAACAGUUUUAGUCUGAUa.................................................. len:21 al:1
........................CCGAACAGUUUUAGUCUGAUG.................................................. len:21 al:8
.........................CGAACAGUUUUAGUCUGAUG.................................................. len:20 al:2
.........................CGAgCAGUUUUAGUCUGAUG.................................................. len:20 al:1
...........................AACAGUUUUAGUCUGAUGUUUACACCA......................................... len:27 al:1
...................................UAGUCUGAUGUUUACACCA......................................... len:19 al:1
.......................................CUGAUGUUUACACCAGACUGAUACUUGUUUG......................... len:31 al:1
........................................UGAUGUUUACACCAGACUGAUACUUGUUUG......................... len:30 al:2
.........................................GAUGUUUACgCCAGACUGAUA................................. len:21 al:1
...........................................UGUUUACgCCAGACUGAUA................................. len:19 al:2
..................................................gCCAGACUGAUACUUGUUU.......................... len:19 al:2
...................................................CCAGACUGAUACUUGUUU.......................... len:18 al:11
...................................................CCAGACUGAUACUUG............................. len:15 al:1
...................................................CCAGACUGAUACUUGUUUG......................... len:19 al:3
...................................................CCAGACUGAUACUUGU............................ len:16 al:1
...................................................CCAGACUGAUACUUGUUUu......................... len:19 al:1
....................................................CAGACUGAUACUUGUUUGGAAUAUc.................. len:25 al:1
....................................................CAGACUGAUACUUGUUUGGAAUA.................... len:23 al:14
.....................................................AGACUGAUACUUGUcUGGAAUA.................... len:22 al:1
.....................................................AGACUGAUACUUGUUUGGAAUAUUaUA............... len:27 al:1
.....................................................AGACUGAUACUUGUUUGGAgUA.................... len:22 al:3
.....................................................AGACUGAUACUUGUUUGGAAU..................... len:21 al:3
.....................................................AGACUGAUACUUGUUUGGAAUA.................... len:22 al:58
.....................................................AaACUGAUACUUGUUUGGAAUA.................... len:22 al:1
.....................................................AGACUGAUACUUGUUUGGAAUAU................... len:23 al:3
.....................................................AGACUGAUACUUGUUUGGAAUAUa.................. len:24 al:1
.....................................................AGACUGAUACUUGUUUGGAAUu.................... len:22 al:1
.....................................................AGgCUGAUACUUGUUUGGAAUA.................... len:22 al:1
.....................................................AGACUGAUACUUGUUUGGAA...................... len:20 al:1
......................................................GACUGAUACUUGUUUGGAAUA.................... len:21 al:15
......................................................GACUGAUACUUGUUUGGAAUAUU.................. len:23 al:1
......................................................GACUGAUACUUGUUUGGAAUAcU.................. len:23 al:2
.......................................................ACUGAUACUUGUUUGGAAU..................... len:19 al:1
.......................................................ACUGAUACUUGUUUGGAAUA.................... len:20 al:8
.........................................................UGAUACUUGUUUGGAAUAUU.................. len:20 al:2