Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7555638-7555732 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4490.ps.pdf
Locus Name: Cluster_4490
GGAGAAAUUUUGUCUGGCAUAUGGUGGGCUGUUGGAACUUGUAUUUUUAUGAUAUCAGUCCCACCAGCUCACCAAUAUGCUAGAUGAUAUUAUGC
.....(((.((((((((((((((((((((((.(((.(((.(((((.....))))).))).))).))))))))).))))))))))))).))).... (-42.80)
..AcAAAUUUUGUCUGGCAUAU......................................................................... len:20 al:13
..AcAAAUUUUGUCUGGCAU........................................................................... len:18 al:1
...cAAAUUUUGUCUGGCAUAUGGUGGGCU................................................................. len:27 al:1
...cAAAUUUUGUCUGGCAUAU......................................................................... len:19 al:17
....AAAUUUUGUCUGGCAUAU......................................................................... len:18 al:1
.....AAUUUUGUCUGGCAUAUGG....................................................................... len:19 al:1
.........UUGUCUGGCAUAUGGUGGGCU................................................................. len:21 al:1
..........UGUCUGGCAUAUGGUGGGCU................................................................. len:20 al:1
...............GGCAUAUGGUGGGCUGUUuGAACUUGU..................................................... len:27 al:1
.................CAUAUGGUGGGCUGUUuGAACUUGU..................................................... len:25 al:1
...................UAUGGUGGGCUGUUuGAACU........................................................ len:20 al:1
.....................UGGUGGGCUGUUuGAACUUGUAUU.................................................. len:24 al:3
.....................UGGUGGGCUGUUuGAACUUG...................................................... len:20 al:12
.....................UGGUGGGCUGUUuGAACUUGUAU................................................... len:23 al:16
.....................UGGUGGGCUGUUuGAACU........................................................ len:18 al:15
.....................UGGUGGGCUGUUuGAACUUGUAUUUUUAUGA........................................... len:31 al:1
.....................UGGUGGGCUGUUuGAACUUGUA.................................................... len:22 al:329
.....................UGGUGGGCUGUUuGAACUU....................................................... len:19 al:22
.....................UGGUGGGCUGUUGGAACUUGUA.................................................... len:22 al:11
.....................UGGUGGGCUGUUuGAACUUGU..................................................... len:21 al:76
.....................UGGUGGGCUGUUGGAACUUGU..................................................... len:21 al:1
......................GGUGGGCUGgUGGAACUUGUA.................................................... len:21 al:2
......................GGUGGGCUGUUGGAACUUGUAUUUUUAUGgU.......................................... len:31 al:1
......................GGUGGGCUGUUGGAACUUGUAUUUUU............................................... len:26 al:2
......................GGUGGGCUGUUGGAACUUGcAU................................................... len:22 al:1
......................GGUGGGCUGUUGGAACUUGUAUg.................................................. len:23 al:1
......................uGUGGGCUGUUGGAACUU....................................................... len:18 al:2
......................GGUGGGCUGUUGGAACaU....................................................... len:18 al:1
......................GGUGGGCUGUUGGAACUUGUAUaU................................................. len:24 al:7
......................GGUGGGCcGUUGGAACUUGUA.................................................... len:21 al:18
......................GGUGGGCUGUUGGAgCUUGUA.................................................... len:21 al:31
......................GGUGGGCUGUUGGAA.......................................................... len:15 al:3
......................GGUGGGCUGUUGGAACUUu...................................................... len:19 al:31
......................GGUGGGCUGUgGGAACUUGUA.................................................... len:21 al:1
......................GGUGGGCUGUUGGAACUUGUAUUaU................................................ len:25 al:3
......................GGUGGGCUGUUGGAACUUGUAUUUUUAUGA........................................... len:30 al:4
......................GGUuGGCUGUUGGAACUUGUA.................................................... len:21 al:2
......................GGUGGGCUGUUGGAACUUGUAaUUU................................................ len:25 al:2
......................GGUGGGCUGUcGGAACUUGUAU................................................... len:22 al:2
......................GGUGGGCUGUUGGAACUUGUAUUUaU............................................... len:26 al:1
......................GGUGGGCUGUUGGAACUUa...................................................... len:19 al:18
......................GGUGGGCUGUUGGAACUUGgA.................................................... len:21 al:4
......................GGUGGGCUGUUGGAACgU....................................................... len:18 al:3
......................GGUGGGCUGUUGaAACUUGUA.................................................... len:21 al:8
......................GGUGGGCUGUUuGAACUUGUAUUUUUAUGAU.......................................... len:31 al:21
......................GGUGGGCUGUUaGAACUUGU..................................................... len:20 al:1
......................GGUGGGCUaUUGGAACUUGUA.................................................... len:21 al:7
......................GGUGGGCUGUUGGAuCU........................................................ len:17 al:3
......................GGUGGGCUGUUGGAACUUGg..................................................... len:20 al:3
......................GGUGGGCUGUUGGAACcUGUAU................................................... len:22 al:3
......................GGUGGGCUGUUGGAACUUGUAUU.................................................. len:23 al:81
......................GGUGGGCUGUUuGAACUUGUAUU.................................................. len:23 al:60
......................GGUGGGCUGUUGGAuCUUG...................................................... len:19 al:39
......................GGUGGGCUGUUGGAuCUUGUAUUU................................................. len:24 al:2
......................aGUGGGCUGUUGGAACUUGU..................................................... len:20 al:9
......................GGUGGGCUGUUGGAgCUUGUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUcGAACUUG...................................................... len:19 al:3
......................GGUGGGCcGUUGGAACUUGUAU................................................... len:22 al:2
......................GGUGGGCUGUUGGAACU........................................................ len:17 al:12
......................GGUGGGCUGUUGGAACaUGUA.................................................... len:21 al:4
......................GGUGGGCUGUUuGAACUUG...................................................... len:19 al:76
......................GaUGGGCUGUUGGAACUUGU..................................................... len:20 al:2
......................GGUGGGCUGUUGGAACUUGUAaU.................................................. len:23 al:62
......................GGUGGGCUGUUuGAACUUGUAUUU................................................. len:24 al:13
......................GGUGGGCUGUUGGAgCUUGUAUUUUUAUG............................................ len:29 al:1
......................GGUGGGCUGUUuGAACUU....................................................... len:18 al:153
......................GGUGGGCUGUUGGAACUUGUAUUUUUAUGAU.......................................... len:31 al:23
......................GGUGGGCUGUUGGAACcUGUA.................................................... len:21 al:22
......................GaUGGGCUGUUGGAACUUGUA.................................................... len:21 al:10
......................GGUGGGCUGUUuGAACUUGUAUUUU................................................ len:25 al:9
......................GGUGGGCUGUUGGAcCUUGUAU................................................... len:22 al:1
......................GGUGGGCUGUUGGAACUUGc..................................................... len:20 al:137
......................aGUGGGCUGUUGGAACUU....................................................... len:18 al:1
......................GGUGGGCUGUUGGAuCUUGUAU................................................... len:22 al:221
......................GGaGGGCUGUUGGAACUUGUA.................................................... len:21 al:3
......................GGUGGGCUGUUGGAuCUUGUA.................................................... len:21 al:508
......................GGUGGGCUGUUGGAACUUGUAUUUUUAUGAc.......................................... len:31 al:2
......................aGUGGGCUGUUGGAACUUGUAU................................................... len:22 al:1
......................GGUGGGCgGUUGGAACUUGUA.................................................... len:21 al:1
......................GGUGGGCUGUUGGAACUUcUA.................................................... len:21 al:1
......................GGUGGGCUGUUGGAACcUGU..................................................... len:20 al:6
......................GGUGGGCUGUcGGAACUUGUA.................................................... len:21 al:27
......................GGUGGGCUGUUGGAACUcGUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUGGAACUUGUAUUU................................................. len:24 al:9
......................GGUGGGCUGUUcGAACUUGUAUUU................................................. len:24 al:1
......................GGUGGaCUGUUGGAACUUGUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUGGAACUUGUAUc.................................................. len:23 al:4
......................GGUGGGCUGUUcGAACUU....................................................... len:18 al:1
......................GGUGGGCUGUUGGAACUg....................................................... len:18 al:2
......................GGUGGGCUGUUuGAACUUGUA.................................................... len:21 al:7284
......................GGUGGGCUGUUGGAACUUGUAg................................................... len:22 al:1
......................GGUGGGCUGUUGGAuCUUGUAUU.................................................. len:23 al:30
......................GGUGGGCUGUUGGAuCUUGU..................................................... len:20 al:1122
......................GGgGGGCUGUUGGAACUUGUAU................................................... len:22 al:1
......................GGUGGGCUGUUGGAACUUGUAaUU................................................. len:24 al:11
......................GGUGGGCUGUUGGAgCUUGU..................................................... len:20 al:12
......................GGUGGGuUGUUGGAACUUGU..................................................... len:20 al:1
......................GGUGGGCUGUUGGAACUUGUAUUa................................................. len:24 al:3
......................GGUGGGCcGUUGGAACUUG...................................................... len:19 al:1
......................GGUGGGCaGUUGGAACUUGUA.................................................... len:21 al:2
......................GGUGGGCUGcUGGAACUUGUA.................................................... len:21 al:32
......................GGUGGGCUGUUGGAACUUGUA.................................................... len:21 al:9666
......................GGUGGGCUGUUGGAACUUGUAUUUUUAUG............................................ len:29 al:4
......................GGUGGGCUGUUGGAACUUaU..................................................... len:20 al:16
......................aGUGGGCUGUUGGAACUUGUA.................................................... len:21 al:69
......................GGUGGGCUGUUGGAACUUGUAa................................................... len:22 al:66
......................GGUGGGCUGUUGGAACUUGUAUUUUUAUa............................................ len:29 al:1
......................aGUGGGCUGUUGGAACUUGUAUUU................................................. len:24 al:2
......................GGUGGGCUaUUGGAACUUGU..................................................... len:20 al:1
......................GGUGGGCUGUcGGAACUUGU..................................................... len:20 al:7
......................GGUGGGCUGUUGGAACUUG...................................................... len:19 al:63
......................GGUGGGCUGUUuGAACUUGUAUUUUUAU............................................. len:28 al:1
......................GGUGaGCUGUUGGAACUUGU..................................................... len:20 al:1
......................GGUGGGCUGUUGGAuCUUGUAUUUU................................................ len:25 al:3
......................GGUGGGCUGUUGGAAuUUGUA.................................................... len:21 al:8
......................GGUGGGCUGUUGGcACUUGU..................................................... len:20 al:2
......................GGUGGGCUGUUGGAACUc....................................................... len:18 al:8
......................GGUGGGCUGUUGGgACUUGU..................................................... len:20 al:8
......................GGcGGGCUGUUGGAACUUGUA.................................................... len:21 al:20
......................GGUGGGCUGUUGGAcCUUGU..................................................... len:20 al:4
......................GGUGGGCUGUUGGAACUUGUu.................................................... len:21 al:71
......................GGUGGGCUGUUGGAACUUGUAU................................................... len:22 al:281
......................GGUGGaCUGUUGGAACUUGU..................................................... len:20 al:5
......................GGUGGGCUGUUuGAACUUGUAU................................................... len:22 al:193
......................GGUGGGCUGUUGGAACUUuUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUGGgACUUGUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUGGAACgUGUA.................................................... len:21 al:3
......................GGUGGGCUGUUGGAACUUGaA.................................................... len:21 al:2
......................GaUGGGCUGUUGGAACUU....................................................... len:18 al:1
......................GGUGGGCUGUUGGAACUU....................................................... len:18 al:255
......................GGUGGGCUGUUGGAACUUGUAUa.................................................. len:23 al:32
......................GGUGGGCUGUUGGAgCUUGUAU................................................... len:22 al:1
......................GGUGGGCUGUUcGAACUUGU..................................................... len:20 al:9
......................GGcGGGCUGUUGGAACUUGU..................................................... len:20 al:7
......................GGUGGGCUGUUGGAACUcGUA.................................................... len:21 al:15
......................GGUGGGCUGUUGGAACUUGUgUU.................................................. len:23 al:1
......................GGUGuGCUGUUGGAACUUGUA.................................................... len:21 al:1
......................GGUGGGCUGUUGGAuCUU....................................................... len:18 al:73
......................GGUGGGCUGUUGGAACUUGa..................................................... len:20 al:12
......................GGUGGGCUGUUuGAACUUGUAUUUUUAUG............................................ len:29 al:15
......................GGUGGGCUGUUGGgACUUGUA.................................................... len:21 al:19
......................GGUGGGCUGUUGGAACgUGU..................................................... len:20 al:1
......................GGUGGGCUGcUGGAACUU....................................................... len:18 al:1
......................aGUGGGCUGUUGGAACUUGUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUGGAACUUGUc.................................................... len:21 al:10
......................GGUGGGaUGUUGGAACUUGUA.................................................... len:21 al:2
......................GGUGGGCUGUUGGAACUa....................................................... len:18 al:2
......................GGUGGGCUGUUGGAAgUUGUA.................................................... len:21 al:1
......................GGUGGGCUGUUGGAuCUUGUAUUUUUAU............................................. len:28 al:1
......................GGUGGGCUGUUGGAACUUGUgU................................................... len:22 al:6
......................GGUGGGCUGUUGGAgCUU....................................................... len:18 al:3
......................GGUGGGCUGUUcGAACUUGUA.................................................... len:21 al:19
......................GGUGGGCUGUUGGAACUgGUA.................................................... len:21 al:1
......................GGUGGGCUGUUGGAACUUuU..................................................... len:20 al:2
......................GGUaGGCUGUUGGAACUUGUA.................................................... len:21 al:9
......................GGUGaGCUGUUGGAACUUGUA.................................................... len:21 al:15
......................GGUGGGCUGUUGGAcCUUGUA.................................................... len:21 al:1
......................GGUGGGCUGUUGGAACUUGUg.................................................... len:21 al:34
......................GGUGGGCUGcUGGAACUUGU..................................................... len:20 al:5
......................GGUGGGCUGUUuGAACUUGUAUUUUUAUGA........................................... len:30 al:6
......................GGUGGGCcGUUGGAACUUGU..................................................... len:20 al:6
......................GGUGGGCUGUUGGuACUUGU..................................................... len:20 al:1
......................GGUGGGCUGUUuGAACU........................................................ len:17 al:12
......................GGUGGGCUGUUuGAACUUGUAUUUUU............................................... len:26 al:3
......................cGUGGGCUGUUGGAACUUGUA.................................................... len:21 al:3
......................GGUGcGCUGUUGGAACUUGUA.................................................... len:21 al:1
......................GGUGGaCUGUUGGAACUUGUA.................................................... len:21 al:13
......................uGUGGGCUGUUGGAACUUGUA.................................................... len:21 al:2
......................GGUGGGCUGUUGGAACUUGU..................................................... len:20 al:1774
......................GuUGGGCUGUUGGAACUUGUA.................................................... len:21 al:3
......................GGUGGGuUGUUGGAACUUGUA.................................................... len:21 al:7
......................GGUGGGCUGUcGGAACUU....................................................... len:18 al:1
......................GGUGGGCUGUUGGcACUUGUA.................................................... len:21 al:7
......................GGUGGGCUGUUGGAACUUGcA.................................................... len:21 al:22
......................GGUaGGCUGUUGGAACUUGUAU................................................... len:22 al:1
......................GGUGGGCUGUaGGAACUUGUA.................................................... len:21 al:1
......................GGUGGGCUGUUaGAACUUGUA.................................................... len:21 al:3
......................GGUGGGCUGUUuGAACUUGU..................................................... len:20 al:1667
......................GGUGGGCUGUUGGAACUUGUAc................................................... len:22 al:19
......................GGUGGGCUGUUGGAACUUGUuUU.................................................. len:23 al:6
......................GGUGGGCUGUUGGAuCUUGUAUUUUUAUGA........................................... len:30 al:4
......................GGUGGGCUGUUGGAACUUGUAUUUU................................................ len:25 al:4
......................GGUGGGCUGUUGGAAuUUGU..................................................... len:20 al:17
......................uGUGGGCUGUUGGAACUUGU..................................................... len:20 al:1
......................GGUGGGCUGUUGGAuCUUGUAUUUUUAUGAU.......................................... len:31 al:11
......................GGUGGGCUGUUGGAACUcGU..................................................... len:20 al:3
......................GGUGGGCUGcUGGAACUUGUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUuGAA.......................................................... len:15 al:1
......................GGUGGGCUGUUGGAACUaGUAUU.................................................. len:23 al:1
......................GGUGGGCUGUUGGAACUUGUuU................................................... len:22 al:13
.......................GUGGGCUGUUGGAuCUUGUAU................................................... len:21 al:2
.......................GUGGGCUGUUGGAACUUGUA.................................................... len:20 al:5
.......................GUGGGCUGUUGGAuCUUGUA.................................................... len:20 al:1
.......................GUGGGCUGUUuGAACUUGUAUUUUUAUGAU.......................................... len:30 al:1
.......................GUGGGCUGUUuGAACUUGUAU................................................... len:21 al:4
.......................GUGGGCUGUUGGAACUUGU..................................................... len:19 al:5
.......................GUGGGCUGUUGGAACUUGUAa................................................... len:21 al:1
.......................GUGGGCUGUUuGAACUUGU..................................................... len:19 al:4
.......................GUGGGCUGUUGGgACUUGUAU................................................... len:21 al:1
.......................GUGGGCUGUUGGAuCUUGU..................................................... len:19 al:7
.......................GgGGGCUGUUGGAACUUGU..................................................... len:19 al:2
.......................GUGGGCUGUUGGAACUUGUu.................................................... len:20 al:1
.......................GUGGGCUGUUGGAACUUGUAUa.................................................. len:22 al:2
.......................GcGGGCUGUUGGAACUUGUA.................................................... len:20 al:1
.......................GUGGGCUGUUuGAACUUGUA.................................................... len:20 al:1
........................UGGGCUGUUGGAACUUGUAUUUU................................................ len:23 al:2
........................UGGGCUGUUGGAcCUUGUAUU.................................................. len:21 al:1
........................UGGGCUGUUGGAACUUGUAUa.................................................. len:21 al:1
........................UGGGCUGUUGGAACUUGUAUUa................................................. len:22 al:1
........................UGGGCUGUUGGAACUUGUuUU.................................................. len:21 al:1
........................UGGGCUGUUuGAACUUGUA.................................................... len:19 al:11
........................UGGGCUGUUGGAACUUGUAa................................................... len:20 al:2
........................UGGGCUGUUGGAACUUGUAU................................................... len:20 al:3
........................UGGGCUGUUuGAACUUGUAUUUU................................................ len:23 al:1
........................UGGGCUGUUGGAACUUGUuU................................................... len:20 al:2
........................UGGGCUGUUGGAACUUGU..................................................... len:18 al:3
........................UGGGCUGUUuGAACUUGUAUU.................................................. len:21 al:6
........................UGGGCUGUUGGAACUUGUA.................................................... len:19 al:16
........................UGGGCUGUUGGAuCUUGUAUUUUUAUGAUA......................................... len:30 al:1
........................UGGGCUGUcGGAACUUGUAUUU................................................. len:22 al:1
........................UGGGCUGUUGGAACUUGUAUU.................................................. len:21 al:15
........................UGGGCUGUUuGAACUUGUAU................................................... len:20 al:1
........................UGGGCUGUUuGAACUUGU..................................................... len:18 al:3
........................UGGGCUGUUGGAuCUUGUAUUUUUAUGAUAU........................................ len:31 al:2
........................UGGGCUGUUGGAACUUGUAUc.................................................. len:21 al:2
........................UGGGCUGUUGGAuCUUGUAUUUUUAUG............................................ len:27 al:1
.........................GGGCUGUUGGAACUUGUA.................................................... len:18 al:1
...........................GCUGUUGGAACUUGUAUUU................................................. len:19 al:3
...........................GCUGUUGGAACUUGUAUgU................................................. len:19 al:1
............................CUGUUuGAACUUGUAUUUUUAUGAUAUC....................................... len:28 al:2
..............................GUUGGAACUUGUAUUUUUAUGAUA......................................... len:24 al:1
..............................GUUGGAACUUGUAUUUUUAUGAUAUCA...................................... len:27 al:4
..............................GUUuGAACUUGUAUUUUUAUGAUAUC....................................... len:26 al:6
..............................GUUGGAuCUUGUAUUUUUAUGAUAUC....................................... len:26 al:1
..............................GUUuGAACUUGUAUUUUUAUGAUAUCA...................................... len:27 al:3
..............................GUUGGAACUUGUAUUUUUAUGAUAUC....................................... len:26 al:2
..............................GUUGGAuCUUGUAUUUUUAUGAUAUCAGUC................................... len:30 al:1
...............................UUGGAACUUGUAUUUUUAUGAU.......................................... len:22 al:1
................................UGGAACUUGUAUUUUUAUGAUAUCA...................................... len:25 al:1
................................UuGAACUUGUAUUUUUAUGAUAUC....................................... len:24 al:1
..........................................AUUUUUAUGAUAUCAGUCCCACCAGCUC......................... len:28 al:1
...........................................UUUUUAUGAUAUCAGUCCCACCAGCU.......................... len:26 al:1
...........................................UUUUUAUGAUAUCAGUCCCACCAGCUCA........................ len:28 al:1
...........................................UUUUUAUGAUAUCAGUCCCACCAGCUCACCA..................... len:31 al:7
............................................cUUUAUGAUAUCAGUCCCACCAGCUCACCAA.................... len:31 al:1
.............................................UUUAUGAUAUCAGUCCCACCAGCUCACCAAU................... len:31 al:9
.............................................UUUAUGAUAUCAGUCCCACCAGCUCACCA..................... len:29 al:2
.............................................UUUAUGAUAUCAGUCCCACCAGCUCACCAA.................... len:30 al:1
...............................................UAUGAUAUCAGUCCCACCAGCUCACCAAU................... len:29 al:1
................................................AUGAUAUCAGUCCCACCAGCUCACCAAU................... len:28 al:1
..................................................GAUAUCAGUCCCACCAGCUCACCAAU................... len:26 al:1
....................................................UAUCAGUCCCACCAGCUCACCA..................... len:22 al:5
....................................................UAUCAGUCCCgCCAGCUCACCAAU................... len:24 al:1
....................................................UgUCAGUCCCACCAGCUCACCAAU................... len:24 al:1
....................................................UAUCAGUCCCACCAGCUCAaC...................... len:21 al:1
....................................................UAUCAGUCCCACCAGCUCACCAAUc.................. len:25 al:1
....................................................UAUCAGUCCCACCAGCUCACu...................... len:21 al:1
....................................................UAUCAGUCCCACCAGCUCACCAu.................... len:23 al:2
....................................................cAUCAGUCCCACCAGCUCACCAAU................... len:24 al:1
....................................................UAUCAGUCCCACCAGCUCACCAA.................... len:23 al:2
....................................................UAUCAGUCCCACCAGCUCACC...................... len:21 al:9
....................................................aAUCAGUCCCACCAGCUCACCAAUA.................. len:25 al:1
....................................................UAUCAGUCCCACCAGCUCACCAAU................... len:24 al:16
....................................................UAUCAGUCCCACCAGCUCACCAAUu.................. len:25 al:1
....................................................gAUCAGUCCCACCAGCUCACCAAU................... len:24 al:2
.....................................................AUCAGUCCCACCAGCUCACCAAUA.................. len:24 al:4
.....................................................AUCAGUCCCACCAGCUCACC...................... len:20 al:8
.....................................................AUCAGUCCCACCAGuUCACCAAU................... len:23 al:1
.....................................................AUCAGUCCCACCAGCUCACCAgU................... len:23 al:1
.....................................................AUCAGUCCCACCAGCUCACCAAUg.................. len:24 al:1
.....................................................AUCAGUCCCACCAGCUCACCAAU................... len:23 al:72
.....................................................AUCAGUCCCACCAGCUCACCA..................... len:21 al:1
.....................................................AUCAGUCCCACCAGCUCACCAAUuU................. len:25 al:1
.....................................................AUCAGUCCCACCAGCUCACCAAUu.................. len:24 al:89
.....................................................AUCAGUCCCACCAGCUCACuAAU................... len:23 al:1
.....................................................cUCAGUCCCACCAGCUCACCAAU................... len:23 al:1
.....................................................AUCAGUCCCgCCAGCUCACCAAU................... len:23 al:1
.....................................................AUCAGUCCCACCAGCUCACCAA.................... len:22 al:3
.....................................................uUCAGUCCCACCAGCUCACCAAU................... len:23 al:1
.....................................................AUCAGUCCCACCAGCUCACCAAUc.................. len:24 al:6
.....................................................AUCAGUCCCACCAGCUCACCAAc................... len:23 al:4
......................................................UCAGUCCCACCAGCcCACCAA.................... len:21 al:5
......................................................UCAGUCCCACCAcCUCACC...................... len:19 al:8
......................................................UCAGUCuCACCAGCUCACCAA.................... len:21 al:2
......................................................UCAGUCCCACCAGCUCgCCA..................... len:20 al:3
......................................................UCAGUaCCACCAGCUCACCAAUA.................. len:23 al:5
......................................................UCAGUCCCACCAGuUCACCAAU................... len:22 al:12
......................................................UCAGUCCCACCAcCUCACCAAUAU................. len:24 al:1
......................................................UCAuUCCCACCAGCUCACCAAU................... len:22 al:1
......................................................UCAGcCCCACCAGCUCACCAAUA.................. len:23 al:1
......................................................UCAGUCCCACCAGCUCACCAc.................... len:21 al:3
......................................................UCAGcCCCACCAGCUCACCA..................... len:20 al:8
......................................................UCgGUCCCACCAGCUCACCAAUA.................. len:23 al:1
......................................................UCAGUCCCACCgGCUCACCAAUA.................. len:23 al:3
......................................................UCAGUCCCACCAGCUCACaAAU................... len:22 al:11
......................................................UCAGUCCCACCAcCUCACCAA.................... len:21 al:7
......................................................UCAGUCCCcCCAGCUCACC...................... len:19 al:1
......................................................UCAGUCCCACaAGCUCACCAAU................... len:22 al:3
......................................................UCAGUCCCACCAGgU.......................... len:15 al:1
......................................................UCAGUCCCgCCAGCUCACCAAU................... len:22 al:43
......................................................UCAGUCCCACCAGCUCACCA..................... len:20 al:1311
......................................................UCAGUCCCACCAGuUCACCAA.................... len:21 al:1
......................................................UCAGUCCCACCAGCUCACuAAU................... len:22 al:17
......................................................UCgGUCCCACCAGCUCACC...................... len:19 al:7
......................................................UCAGUCCCACCAGCUCACCAAa................... len:22 al:97
......................................................UCAGUCCCACCAGCUCACuA..................... len:20 al:6
......................................................aCAGUCCCACCAGCUCACCAA.................... len:21 al:2
......................................................UCAGUCCCACCAaCUCACCAAU................... len:22 al:30
......................................................UCAGUCCCACCAGCUuACCAAU................... len:22 al:8
......................................................UCAGUCCCACCAGgUCACCAAU................... len:22 al:1
......................................................UCAGUCCCACCgGCUCACCAAU................... len:22 al:43
......................................................UCAGUCCCACCAGCUCACCc..................... len:20 al:6
......................................................UCAGUCCCACCAGCUCAuC...................... len:19 al:2
......................................................UCAGUCCCACCAGCUuACC...................... len:19 al:1
......................................................UCAGUCCCACCAGCUCgCCAA.................... len:21 al:1
......................................................UCAGUCCCACCAGCUCgCC...................... len:19 al:12
......................................................UCAGUCCCACCAGCUCACCAAUg.................. len:23 al:27
......................................................UCAGUCCCACCAGCUCAC....................... len:18 al:61
......................................................UCAGUCCCACCAcCUCACCAAU................... len:22 al:270
......................................................UCAGUCCCACCAGCUCACCg..................... len:20 al:11
......................................................UCAGUCCCACuAGCUCACCA..................... len:20 al:3
......................................................aCAGUCCCACCAGCUCACCA..................... len:20 al:2
......................................................UCAGUCaCACCAGCUCACCAAU................... len:22 al:3
......................................................UCAGUgCCACCAGCUCACCAAU................... len:22 al:1
......................................................UCAGcCCCACCAGCUCACCAAU................... len:22 al:42
......................................................UCAGUCCCACuAGCUCACC...................... len:19 al:2
......................................................UCAGUCCCACCAGCUCACCAAUcU................. len:24 al:1
......................................................UCAGUCCCACCAGCUCACCAuUA.................. len:23 al:3
......................................................UCAGUCCCACCuGCUCACCAA.................... len:21 al:1
......................................................UCgGUCCCACCAGCUCACCA..................... len:20 al:4
......................................................UCAGUCuCACCAGCUCACCAAU................... len:22 al:20
......................................................UCAGUCCCACCAGCUCACCcAU................... len:22 al:5
......................................................UCAGUCCCACCAGCcCACCA..................... len:20 al:9
......................................................UuAGUCCCACCAGCUCACCAA.................... len:21 al:1
......................................................UCAGUCCCACCAGCUCACCuA.................... len:21 al:2
......................................................UCAGUCCCACCAGCUCACCAAc................... len:22 al:874
......................................................UCuGUCCCACCAGCUCACC...................... len:19 al:1
......................................................UCAGUCCCACCAGCUCACu...................... len:19 al:110
......................................................UCAGgCCCACCAGCUCACCA..................... len:20 al:1
......................................................UCAGUCCCACCAGCUCACCgAUA.................. len:23 al:2
......................................................UCAGUCCCACCAGCUCAuCAAU................... len:22 al:12
......................................................UCAGUCCCACCAGCUCuCC...................... len:19 al:1
......................................................UuAGUCCCACCAGCUCACC...................... len:19 al:3
......................................................UCuGUCCCACCAGCUCACCAAU................... len:22 al:10
......................................................UCAGUCCCACCAGCUCACCAAUuU................. len:24 al:85
......................................................UCAGaCCCACCAGCUCACCAA.................... len:21 al:1
......................................................UCAGUCCCACCcGCUCACCAA.................... len:21 al:1
......................................................UCAGUCCCACCAGCUCACCAAg................... len:22 al:35
......................................................UCAGUCCaACCAGCUCACCAAU................... len:22 al:4
......................................................UCAGUCCCACCgGCUCACC...................... len:19 al:2
......................................................UCAGUCCCACCAcCUCACCAAUA.................. len:23 al:9
......................................................UCAGUCCCACCAGCUCAuCAA.................... len:21 al:1
......................................................UCAGaCCCACCAGCUCACCAAU................... len:22 al:4
......................................................UCAGcCCCACCAGCUCACC...................... len:19 al:3
......................................................UCAGUCCCACCAGCUCACCuAUA.................. len:23 al:1
......................................................UCAGUCCCACCAGCUCACCuAU................... len:22 al:93
......................................................UCgGUCCCACCAGCUCACCAA.................... len:21 al:2
......................................................cCAGUCCCACCAGCUCACCA..................... len:20 al:9
......................................................UCAGUCCCuCCAGCUCACCAAU................... len:22 al:8
......................................................UCAGUCCCACCAGCUCAa....................... len:18 al:1
......................................................UCAGUCCCACCAGCUCc........................ len:17 al:1
......................................................UCAGUCCuACCAGCUCACCAAU................... len:22 al:27
......................................................UCAGUaCCACCAGCUCACCAAU................... len:22 al:17
......................................................UCAaUCCCACCAGCUCACCAAU................... len:22 al:5
......................................................UCAGUCCCACCAGuUCACCA..................... len:20 al:2
......................................................UCAGUCCCACCAGuUCACC...................... len:19 al:1
......................................................UCAGUCCCACCAGCUCACCAAcA.................. len:23 al:2
......................................................UCAGUCCCACCAGCUCACCAAUAc................. len:24 al:1
......................................................UCAGUCCCAgCAGCUCACC...................... len:19 al:1
......................................................UCAGUCCCACCcGCUCACCAAU................... len:22 al:12
......................................................UCAGUCCCACCAGCUCAaCAAU................... len:22 al:2
......................................................UCAGUCCCACCAGCUuACCAA.................... len:21 al:1
......................................................gCAGUCCCACCAGCUCACCAA.................... len:21 al:1
......................................................UCAGUCCCACCAGCUuACCA..................... len:20 al:1
......................................................UCAGUCCCACCAGCUCACCAAaA.................. len:23 al:2
......................................................UCAGUCCCACCAGCU.......................... len:15 al:20
......................................................UCAGUCCCACCAaCUCACC...................... len:19 al:2
......................................................UCAGUCCCgCCAGCUCACCA..................... len:20 al:4
......................................................UCAGUCCCAuCAGCUCACCAA.................... len:21 al:1
......................................................UCAGUCCCgCCAGCUCACC...................... len:19 al:2
......................................................UCAGUCCCACCgGCUCACCA..................... len:20 al:4
......................................................UCAGUCCCgCCAGCUCACCAAUA.................. len:23 al:2
......................................................UCAGUCCCACCAGCUCgCCAAUA.................. len:23 al:2
......................................................UCAGUCCCACCAGCcCAC....................... len:18 al:1
......................................................UCAGUCCCACCAGCUgACC...................... len:19 al:1
......................................................UCAGUCCCAuCAGCUCACC...................... len:19 al:2
......................................................UCAGUCCCACCAGCUCA........................ len:17 al:12
......................................................UCAGUCCCACCAGCUCACaA..................... len:20 al:3
......................................................UuAGUCCCACCAGCUCACCAAU................... len:22 al:8
......................................................UaAGUCCCACCAGCUCACCAAUA.................. len:23 al:1
......................................................UCAGUCCCACCAGCUCgCCAAU................... len:22 al:47
......................................................UCAGUCCCACCAGaUCACCAAU................... len:22 al:3
......................................................UCAGUCCCAuCAGCUCACCA..................... len:20 al:2
......................................................UCAGUCCCACCAGCUCACCAAUAU................. len:24 al:2
......................................................UCAGUCCCACCAGCUCACCAu.................... len:21 al:24
......................................................UCAGUCCCACCAGCcCACC...................... len:19 al:4
......................................................UCAGUCCCACCAGCUCcCCA..................... len:20 al:1
......................................................UCAGUCuCACCAGCUCACCA..................... len:20 al:2
......................................................UCAGUCCCAuCAGCUCACCAAU................... len:22 al:10
......................................................UCAGUCCCACCAGCUCAuCA..................... len:20 al:1
......................................................aCAGUCCCACCAGCUCACCAAUA.................. len:23 al:1
......................................................UCAGUCCuACCAGCUCACCAAUA.................. len:23 al:1
......................................................UCuGUCCCACCAGCUCACCAAUA.................. len:23 al:2
......................................................UCAGUCaCACCAGCUCACCA..................... len:20 al:2
......................................................UCAGUCCCACCAGCUaACCAAU................... len:22 al:1
......................................................UCAGUCCCcCCAGCUCACCAAUA.................. len:23 al:1
......................................................aCAGUCCCACCAGCUCACC...................... len:19 al:1
......................................................UCAuUCCCACCAGCUCACCA..................... len:20 al:1
......................................................UCAGUCCCACCAGCUCACCgAU................... len:22 al:41
......................................................cCAGUCCCACCAGCUCACCAA.................... len:21 al:2
......................................................aCAGUCCCACCAGCUCACCAAU................... len:22 al:56
......................................................cCAGUCCCACCAGCUCACC...................... len:19 al:7
......................................................UCAGUCCCACCAGCUCACCAAUAa................. len:24 al:1
......................................................UCAGUCCCACCAcCUCAC....................... len:18 al:2
......................................................gCAGUCCCACCAGCUCACCAAU................... len:22 al:4
......................................................UCuGUCCCACCAGCUCACCA..................... len:20 al:2
......................................................UCAGUCCCcCCAGCUCACCAAU................... len:22 al:12
......................................................UCgGUCCCACCAGCUCACCAAU................... len:22 al:45
......................................................UCAGUCCCACCuGCUCACCAAU................... len:22 al:7
......................................................UCAGUCCCACCAGCUCACCAcU................... len:22 al:8
......................................................UCAGUCCCAaCAGCUCACCAAU................... len:22 al:5
......................................................UCAGUCCCACCAGCUCACCAAU................... len:22 al:15346
......................................................UCAGUCCCACCAGCUgACCAAU................... len:22 al:1
......................................................UCAGUCCCACCAGCUCACCAA.................... len:21 al:559
......................................................UCAGUCCCACCAGCUCACCAAUu.................. len:23 al:9788
......................................................UCAGUCCCACCAGCUCACCAgU................... len:22 al:323
......................................................UCAGUCCCACCAGCUCACC...................... len:19 al:1073
......................................................UCAGUCCCACCAGCUCACCgA.................... len:21 al:1
......................................................UCAGUCCCuCCAGCUCACCA..................... len:20 al:2
......................................................UCAGUCCCgCCAGCUCAC....................... len:18 al:1
......................................................UCAGUCCCACCAGCaCACCA..................... len:20 al:1
......................................................UCAGUCCCACuAGCUCACCAAU................... len:22 al:16
......................................................UCAGUCCCACCAaCUCACCA..................... len:20 al:1
......................................................UCcGUCCCACCAGCUCACCAAU................... len:22 al:13
......................................................cCAGUCCCACCAGCUCACCAAU................... len:22 al:80
......................................................UCcGUCCCACCAGCUCACCAAUA.................. len:23 al:1
......................................................UCAGcCCCACCAGCUCACCAA.................... len:21 al:3
......................................................UCAGUCCCACCAGCUCcCCAAU................... len:22 al:11
......................................................UCAGUCCCACCAGCaCACCAAU................... len:22 al:10
......................................................UCAGUCCCgCCAGCUCACCAA.................... len:21 al:2
......................................................UCAGUCCCACCAGCUCACCAAUA.................. len:23 al:334
......................................................UCAGUCCCACCAGCUCACCAAUgU................. len:24 al:2
......................................................UCAGUCCCACCAGCUCACCAg.................... len:21 al:3
......................................................UCAGUCCCACCAGCUC......................... len:16 al:3
......................................................UCAGUCCCACCAcCUCACCA..................... len:20 al:31
......................................................UCAGUCCCACCAGCUCACCAuU................... len:22 al:9
......................................................UCAGUCCCACCAGCUCACCAAUc.................. len:23 al:479
......................................................UCAGUgCCACCAGCUCACCAAUA.................. len:23 al:1
......................................................UCAGcCCCACCAGCUCAC....................... len:18 al:1
......................................................UCAGUCCCACCAGCcCACCAAUA.................. len:23 al:1
......................................................UCAGUCCCACCAGCUCACa...................... len:19 al:42
......................................................UCAGUCCCACCAGCUCcCC...................... len:19 al:1
......................................................UCAGUCCCACCAGCUCACCu..................... len:20 al:10
......................................................UCAGUCCCACCAGCUCAu....................... len:18 al:17
......................................................UCAGUCCCACCAGCcCACCAAU................... len:22 al:79
......................................................cCAGUCCCACCAGCUCACCAAUA.................. len:23 al:4
.......................................................CAGUCCCACCAGCUCACCAAUc.................. len:22 al:1
.......................................................CAGUCCCACCAGCUCACCAgU................... len:21 al:1
.......................................................CAGUCCCACCAGCUCACCuAU................... len:21 al:2
.......................................................CAGUCCCACCAGCUCACC...................... len:18 al:1
.......................................................CAGUCCCACCAGCUCACCA..................... len:19 al:6
.......................................................CAGUCCCACCAGCUCACCAAU................... len:21 al:34
.......................................................CAGUCCCACCAGCUCACCAAUu.................. len:22 al:17
.......................................................CAGUCCCACCAGCUCACCAA.................... len:20 al:2
.......................................................CAGUCCCACCAGCUCACu...................... len:18 al:1
........................................................AGUCCCACCAGCUCACCAAUu.................. len:21 al:21
........................................................AGUCCCACCAGCUCACCAA.................... len:19 al:2
........................................................AGUCCCACCgGCUCACCAAU................... len:20 al:1
........................................................AGcCCCACCAGCUCACCAAU................... len:20 al:1
........................................................AGUCCCACCAGCUCACCAAU................... len:20 al:17
........................................................AGUCCCACCAGCUCACCAgU................... len:20 al:2
........................................................AGUCCCACCAGCUCACCA..................... len:18 al:1
........................................................AGUCCCACCAGCUCACCAAUc.................. len:21 al:1
.........................................................GUCCCACCAGCUCACC...................... len:16 al:1
.........................................................GUCCCACCAGCUCACCAAUu.................. len:20 al:1
.........................................................GUCCCACCAGCUCACCAAU................... len:19 al:12
..........................................................UCCCACCAGCUCACCAAU................... len:18 al:2
..........................................................UgCCACCAGCUCACCAAUA.................. len:19 al:1
..........................................................UCCCACCAGCUCACCAAUu.................. len:19 al:4
..........................................................UCCCACCAGCUCACCAAUA.................. len:19 al:2
...........................................................CCCACCAGCUCACCAAUu.................. len:18 al:1
............................................................CCACCAGCUCACCAAUu.................. len:17 al:1
............................................................CCACCAGCUCACCAAUA.................. len:17 al:2
................................................................CAGCUCACCAAUAUGCUA............. len:18 al:1