Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7553282-7553379 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4489.ps.pdf
Locus Name: Cluster_4489
AGGGAGAAUAUUGUCUGGCAUAAGGUGAGCUGUGGGAACUCUUAUUAUUUAUGAUAUCAGUUCCACCAGCUCACCAAUAUGCCAGAUGAUAAUAUGCA
..(.(...((((((((((((((.(((((((((..((((((..(((((....)))))..))))))..)))))))))..))))))))))))))...).). (-47.40)
AGGGAGAAUAUUGUCUGGCgUA............................................................................ len:22 al:8
AGGGAGAAUAUUGUCUGGCAUA............................................................................ len:22 al:7
.GGGAGAAUAUUGUCUGGCAU............................................................................. len:20 al:3
.GGGAGAAUAUUGUCUGGCAUA............................................................................ len:21 al:20
.GGGAGAAUAUUGUCUGGCgUA............................................................................ len:21 al:42
.GGGAGAAUAUUGUCUGGCAc............................................................................. len:20 al:1
.GGGAGAAUAUUGUCUGGCgU............................................................................. len:20 al:2
.GGGAGAAUAUUGUCUGGCAaA............................................................................ len:21 al:3
..GGAGAAUAUUGUCUGGCgUA............................................................................ len:20 al:34
..GGAGAAUAUUGUCUGGCAU............................................................................. len:19 al:1
..GGAGAAUAUUGUCUGGCAaA............................................................................ len:20 al:4
..GGAGAAUAUUGUCUGGCgU............................................................................. len:19 al:4
..GGAGAAUAUUGUCUGGCAUA............................................................................ len:20 al:9
..GGgGAAUAUUGUCUGGCAUA............................................................................ len:20 al:1
..GGAGcAUAUUGUCUGGCAUA............................................................................ len:20 al:1
...GAGAAUAUUGUCUGGCAU............................................................................. len:18 al:5
...GAGAAUAUUGUCUGGCgUA............................................................................ len:19 al:39
...GAGAAUAUUGUCUGGCAUA............................................................................ len:19 al:15
...GAGAAUAUUGUCUGGCgU............................................................................. len:18 al:2
....AGAAUAUUGUCUGGCgUA............................................................................ len:18 al:11
....AGAAUAUUGUCUGGCAUA............................................................................ len:18 al:5
.....GAAUAUUGUCUGGCAaAAGGUGAGC.................................................................... len:25 al:1
......AAUAUUGUCUGGCAUAAGGUGAGu.................................................................... len:24 al:1
......AAUAUUGUCUGGCAUAAGGUGAGC.................................................................... len:24 al:1
........UAUUGUCUGGCgUAAGGUGAGCU................................................................... len:23 al:1
.........AUUGUCUGGCAUAAGGUGAGCU................................................................... len:22 al:2
............GUCUGGCgUAAGGUGAGCUGUGGGAACUCUU....................................................... len:31 al:1
..............CUGGCgUAAGGUGAGCUGUGGGAA............................................................ len:24 al:1
....................UAAGGUGAGCUGUGGGAACUCUUA...................................................... len:24 al:1
.....................AAGGUGAGCUGUGGGAACUCUUA...................................................... len:23 al:6
.....................AAGGUGAGCUGUGGGAACUCUU....................................................... len:22 al:1
......................cGGUGAGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUa......................................................... len:19 al:5
......................gGGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:2
......................AaGUGAGCUGUGGGAACU.......................................................... len:18 al:2
......................AGGUGAGCUGUGGGAACa.......................................................... len:18 al:16
......................AGGUGAGCUGUGGGAACUCUgA...................................................... len:22 al:3
......................AGGUGAGCUGUGGGAACUCUa....................................................... len:21 al:19
......................AGGUGAGCUGUGGGAACgCU........................................................ len:20 al:2
......................AGGUGAGCUGUGGGAACUCUUAUaAUU................................................. len:27 al:2
......................AGGUGAGCUGUGGGAACc.......................................................... len:18 al:30
......................AGGUGAGuUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAAuUCUUA...................................................... len:22 al:15
......................AGGUGAGCUGcGGGAACUCUU....................................................... len:21 al:7
......................AGGUGAGCUGUGGGAAC........................................................... len:17 al:11
......................uGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:18
......................AGGUGAGCUGUGaGAACUC......................................................... len:19 al:1
......................cGGUGAGCUGUGGGAACU.......................................................... len:18 al:5
......................AGGUGAGCUGUGGGAACUCUUAUc.................................................... len:24 al:9
......................AGGUGAGCUGUGGuAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAgCUCUU....................................................... len:21 al:9
......................AGGUGAGCUGUGGGAACUCUUAUUAa.................................................. len:26 al:1
......................AGGaGAGCUGUGGGAACUCUUA...................................................... len:22 al:7
......................AGGUGAGCaGUGGGAACUCUU....................................................... len:21 al:1
......................AuGUGAGCUGUGGGAACUCUUAUUA................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACgCUU....................................................... len:21 al:1
......................AGGUGAaCUGUGGGAACUCUUA...................................................... len:22 al:12
......................AGGUGAGCUGUGGGAACUCUUAUUuUU................................................. len:27 al:2
......................AGGUGAGCUGUGGGAACUCUUAgU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAAuUCUUAU..................................................... len:23 al:1
......................AGGUGAGCaGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAAuUCUUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCUcA...................................................... len:22 al:20
......................AGGUGAGCUGUGGGAACUCUUuU..................................................... len:23 al:5
......................AGGUGAGCUGUGGGAAu........................................................... len:17 al:1
......................AGGUGAGCUaUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGuUGUGGGAACUCUUA...................................................... len:22 al:14
......................AGGUGAaCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUaAGCUGUGGGAACUCUUA...................................................... len:22 al:11
......................AGGUGAGCcGUGGGAACUCU........................................................ len:20 al:4
......................AGGUuAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUc...................................................... len:22 al:10
......................AGGUGAaCUGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAACUCUaA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUAa..................................................... len:23 al:79
......................AGGUGAGCUGgGGGAACUCUUA...................................................... len:22 al:6
......................AGGUGAGCUGcGGGAACUCUUAUUA................................................... len:25 al:1
......................AGGcGAGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGcGAGCUGUGGGAACUCUU....................................................... len:21 al:7
......................AGGUGAGCUGUGGGAACUCc........................................................ len:20 al:52
......................AGGUGAGCUGUGGuAACUCU........................................................ len:20 al:2
......................AGGUGAGuUGUGGGAACUCUUAU..................................................... len:23 al:2
......................AGGUGAGCUGUGGGAACUCUUu...................................................... len:22 al:81
......................AuGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:5
......................AGGUGAGCcGUGGGAACUCUUAUU.................................................... len:24 al:2
......................AGGUGAGCUGUGGGAACUCUUAUUc................................................... len:25 al:1
......................AGGUGAGCUGcGGGAACUCU........................................................ len:20 al:2
......................AGGUGAGCUuUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUAUUA................................................... len:25 al:11
......................AGGUGgGCUGUGGGAACUCUUAU..................................................... len:23 al:7
......................AGGUGAGCUGUGGGAcCUCU........................................................ len:20 al:2
......................AGGUGAGCUGUGcGAACUCUUA...................................................... len:22 al:1
......................uGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:473
......................AGGUGAGCUGUGGGAACUuU........................................................ len:20 al:5
......................AGGUGAGCcGUGGGAACUCUUA...................................................... len:22 al:35
......................AaGUGAGCUGUGGGAACUCUU....................................................... len:21 al:10
......................AGaUGAGCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUAaUA................................................... len:25 al:67
......................AaGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:79
......................AGGUGAGCUGUGGGAACg.......................................................... len:18 al:2
......................gGGUGAGCUGUGGGAACUC......................................................... len:19 al:4
......................cGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:24
......................AGGUGAGCUGUGGGAACUCUUAUaA................................................... len:25 al:13
......................AGGUGAGCUGUGaGAACU.......................................................... len:18 al:1
......................AGaUGAGCUGUGGGAACUCUU....................................................... len:21 al:3
......................gGGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACUCUg....................................................... len:21 al:8
......................AGGUGAGCUGUGGGAACcCUUA...................................................... len:22 al:35
......................AGGUGAGCUGUGGGAACUCcUA...................................................... len:22 al:25
......................AGGcGAGCUGUGGGAACU.......................................................... len:18 al:3
......................gGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:10
......................AGGUGAGCUGUGGGAACUCgU....................................................... len:21 al:37
......................AGGUGAGCUGUGGGAACUCUUAUgA................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUCUUg...................................................... len:22 al:29
......................AGGUGAGCaGUGGGAACUCUUA...................................................... len:22 al:3
......................AGGUGAGCUGUGGGgACUCUU....................................................... len:21 al:11
......................AGGUGAGCUGUGGGAACUCUUAc..................................................... len:23 al:15
......................AGGUGAGCUGUGGGAACUCUUAUUuU.................................................. len:26 al:1
......................AGGUGAGCUGUGGGAcCUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCaU....................................................... len:21 al:27
......................AGGUGAGCUGUGuGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAAaU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGgACUCU........................................................ len:20 al:2
......................AGGUGAGCUGUGGGAACUCcU....................................................... len:21 al:3
......................AGGUGAGCUGUGaGAACUCUUA...................................................... len:22 al:12
......................AGGUGAuCUGUGGGAACUCUUA...................................................... len:22 al:7
......................AGGUGAGCUGUGGGAACUCUUAUUAUUUAUG............................................. len:31 al:5
......................AGGUGAGCUGUGGGAACcCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUC......................................................... len:19 al:218
......................AGGUGAGCUGUGGGAA............................................................ len:16 al:4
......................AGGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:233
......................AGGUGAGCUGUGGGAAuU.......................................................... len:18 al:2
......................AGGUGAGCcGUGGGAACUCUUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACUCcUAU..................................................... len:23 al:3
......................AGGUGAGCUGcGGGAACUCUUAUU.................................................... len:24 al:3
......................AGaUGAGCUGUGGGAACUCUUA...................................................... len:22 al:11
......................AGGUGAGCUGcGGGAACUCUUAU..................................................... len:23 al:2
......................AaGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:1
......................AGGcGAGCUGUGGGAACUCUUAU..................................................... len:23 al:2
......................AGGUGAGCUGUGGGAgCUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAgCUCUUAUU.................................................... len:24 al:2
......................AGGUGAGCUGUGGGAACUCUUAaUAU.................................................. len:26 al:21
......................AGGUGAGCcGUGGGAACUCUU....................................................... len:21 al:7
......................gGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:73
......................AGuUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAAuUCUU....................................................... len:21 al:3
......................AGGUGAGCUGgGGGAACUCUU....................................................... len:21 al:1
......................AGGUGuGCUGUGGGAACUCUUA...................................................... len:22 al:6
......................AGGUGAGCgGUGGGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGcGGGAACUCUUA...................................................... len:22 al:46
......................AGGUGgGCUGUGGGAACUCUUA...................................................... len:22 al:81
......................AGGUGAGCUGUGGGAACUCUUAaU.................................................... len:24 al:54
......................AGGUGAGCUGUGGGgACU.......................................................... len:18 al:3
......................AaGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:2
......................AGGUGAGCUGUuGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUaUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCUUAUUu................................................... len:25 al:22
......................AGGUGAGCUGUGGGA............................................................. len:15 al:14
......................AGGUGAGCUGUGGaAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:2738
......................AGGUGAGCUGUaGGAACUCUUA...................................................... len:22 al:7
......................AGGUGAGCUGUGGGAACU.......................................................... len:18 al:546
......................AGGUGAGCUGUGGGAACUCUUAg..................................................... len:23 al:10
......................AGGUGAGCUGUGGGAACUCUcAUUAU.................................................. len:26 al:1
......................AGGUGAuCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGcGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCaUA...................................................... len:22 al:6
......................AGGUGAGCUGaGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAgCUCUUAU..................................................... len:23 al:1
......................AGGUGgGCUGUGGGAACUCUU....................................................... len:21 al:18
......................AGGUGAGCUGUGGGAACUCUUAUaAU.................................................. len:26 al:2
......................AGGUGAGCUGUGGGAACUCUUAUg.................................................... len:24 al:2
......................AGGUGAGCUGUGGGAACUCU........................................................ len:20 al:617
......................gGGUGAGCUGUGGGAACUCU........................................................ len:20 al:3
......................AGGUGAGuUGUGGGAACUCUU....................................................... len:21 al:3
......................AGGUGcGCUGUGGGAACUCUUA...................................................... len:22 al:9
......................AGGUGgGCUGUGGGAACUC......................................................... len:19 al:1
......................AGGUGgGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGgACUCUUA...................................................... len:22 al:66
......................AGGUGAGCUGUGGGAACUCUUgU..................................................... len:23 al:2
......................AGGUGAGCUGUGGGAgCU.......................................................... len:18 al:4
......................AGGUGuGCUGUGGGAACUCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGgACUCUUAUU.................................................... len:24 al:1
......................AGGcGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACaC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAgCUCUUA...................................................... len:22 al:36
......................AGGUGAGCUGUGGaAACUCUUA...................................................... len:22 al:16
......................AGGUGAGCUGUGGGAACUaUUA...................................................... len:22 al:5
......................AGGUGAGCUGUGGGAACUuUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUuUU....................................................... len:21 al:4
......................AGGUGgGCUGUGGGAACU.......................................................... len:18 al:3
......................AGGUGAGCUGUGGGAACcCUUAU..................................................... len:23 al:2
......................AGGUGAGCUGUGaGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:17451
......................AGGUGcGCUGUGGGAACUCU........................................................ len:20 al:2
......................AGGUGAGCUGUGGGAACUCUUAUUAUUU................................................ len:28 al:3
......................AGuUGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUaU........................................................ len:20 al:6
......................AGGUGAGCUGUGGGAACUCa........................................................ len:20 al:32
......................AGGUGAGCUGUGGGAACUCgUA...................................................... len:22 al:3
......................gGGUGAGCUGUGGGAACU.......................................................... len:18 al:6
......................AGGUGAGCUGUaGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGAACUu......................................................... len:19 al:17
......................cGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:6
......................AGGUGAGCUGUGGGAACUCUUAUUAU.................................................. len:26 al:11
......................AGGcGAGCUGUGGGAACUCUUA...................................................... len:22 al:35
......................AGGUGAGCUGUGGGuACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUaUU....................................................... len:21 al:3
......................AGGUGAaCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUaUGGGAACUCUUA...................................................... len:22 al:9
......................AGGUGAGCUGUGGGAAuUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAACUCUc....................................................... len:21 al:106
......................AGGUGAGCUGUGGGcACUCUUA...................................................... len:22 al:5
......................AGGUGAGuUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACaCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACcCUU....................................................... len:21 al:9
......................AGGUGAGCUGUGGGAACUCUUAUa.................................................... len:24 al:221
......................AGGUGAGCUGUGGGAACUCUUAUUAUU................................................. len:27 al:3
......................AGGUGcGCUGUGGGAACUCUU....................................................... len:21 al:5
......................AGGUGAGCUGUGGGAACUCg........................................................ len:20 al:7
.......................GGUGAaCUGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGgACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCUUuU..................................................... len:22 al:1
.......................GGUGAGCUGUGGGAACUCUUAaUA................................................... len:24 al:3
.......................GGUGAGCUGUGGGAACcCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCU........................................................ len:19 al:5
.......................GGUGAGuUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:113
.......................GGUGAGCUGUGGGAACUCUa....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCUUAUU.................................................... len:23 al:5
.......................GGUGAGCUGUGGGAACUCUUAaUAU.................................................. len:25 al:1
.......................GGUGgGCUGUGGGAACUCUUA...................................................... len:21 al:3
.......................GGUGAGCUGUGGGAACUCUUAUUu................................................... len:24 al:1
.......................GGcGAGCUGUGGGAACUCU........................................................ len:19 al:1
.......................GGUGAGCUGUGGGAACUCUU....................................................... len:20 al:20
.......................GGUGAGCUGUGGGAACUCUUAU..................................................... len:22 al:2
.......................GGUGAGCUGUGGGAACUCUUAaU.................................................... len:23 al:2
.......................aGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:2
.......................GGUGAGCUGUGGGAACUCUUAUa.................................................... len:23 al:2
.......................GGUGAGCUGUGGGAACUCUUu...................................................... len:21 al:4
.......................GGUGAGCUGUGGGAACUC......................................................... len:18 al:8
.......................GGUGAGCUGUGGGAACUCUc....................................................... len:20 al:3
........................GUGAGCUGUGGGAACUCUUAaU.................................................... len:22 al:1
........................GUGAGCUGUGGGAACUCUUAUU.................................................... len:22 al:3
........................GUGAGCUGUGGGAACUCUUAUUu................................................... len:23 al:1
........................GUGAGCUGUGGGAACUCUUAUa.................................................... len:22 al:4
........................GUaAGCUGUGGGAACUCUU....................................................... len:19 al:1
........................GUGAGCUGUGGGgACUCUUA...................................................... len:20 al:2
........................GUGAGCUGUGGGAACUCUc....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUCUUA...................................................... len:20 al:45
........................GUGAGCUGUGGGAACUCUU....................................................... len:19 al:3
........................GUGAGCUGUGGGAACUCUUAU..................................................... len:21 al:4
........................GUGAGCUGUGGGAACUCU........................................................ len:18 al:1
........................GUGAGCUGUGGGAACUCUUu...................................................... len:20 al:2
.........................UGAGCUGUGGGAgCUCUUA...................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCUUAUU.................................................... len:21 al:2
.........................UGAGCUGUGGGAACUuUUAU..................................................... len:20 al:1
.........................UGcGCUGUGGGAACUCUUA...................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCUUgU..................................................... len:20 al:2
.........................UGAGCUGUGGGAACUCUUAU..................................................... len:20 al:5
.........................cGAGCUGUGGGAACUCUUA...................................................... len:19 al:1
.........................UGAaCUGUGGGAACUCUUA...................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCUUA...................................................... len:19 al:53
.........................UGAGCUGUGGGAACUCUU....................................................... len:18 al:6
.........................UGAGCUGUGGGAACUCUUu...................................................... len:19 al:1
.........................UGAGCUGUGGGAgCUCUU....................................................... len:18 al:1
..........................GAGCUGUGGGAACUCUUAUUuU.................................................. len:22 al:1
..........................GAGCUGUGGGgACUCUUA...................................................... len:18 al:1
..........................GAGCUGUGGGAACUCUUA...................................................... len:18 al:7
...........................AGCUGUGGGAACUCUUAUUAUUUAUGAUAUC........................................ len:31 al:3
...........................AGCUGUGGGAACUCUUAaU.................................................... len:19 al:1
...........................AGCUGUGGGAACUCUUAU..................................................... len:18 al:1
.............................CUGUGGGAACUCUUAUUAUUUAUGAUAUCAG...................................... len:31 al:3
.............................CUGUGGGAACUCUUAUUAUUUAUGAUAUC........................................ len:29 al:1
..............................UGUGGGAACUCUUAUUAUUUAUGAU........................................... len:25 al:1
..............................UGUGGGAACUCUUAUUAUUUAUGAUA.......................................... len:26 al:1
..............................UGUGGGAACUCUUAUUAUUUAUGAUAUCA....................................... len:29 al:1
..............................UGUGGGAACUCUUAUUAUUUAUGAUAUC........................................ len:28 al:1
..............................UGUGGGAACUCUUAUUAUUUAUGAUAUCAG...................................... len:30 al:2
..............................UGUGGGAACUCUUAUUAUUUAUGAUAUCAGc..................................... len:31 al:1
...............................GUGGGAACUCUUAUUAUUUAUGAUAUCAGU..................................... len:30 al:4
...............................GUGGGAACUCUUAUUAUUUAUGAU........................................... len:24 al:1
...............................GUGGGAACUCUUAUUAUUUAUGAUA.......................................... len:25 al:2
...............................GUGGGAACUCUUAUUAUUUAUG............................................. len:22 al:1
...............................GUGGGAACUCUUAUUAUUUAUGAUAUCA....................................... len:28 al:2
...............................GUGGGAACUCUUAUUAUUUAUGAUAUCAG...................................... len:29 al:1
...............................GUGGGAACUCUUAUUAUUUAUGAUAUC........................................ len:27 al:1
................................UGGGAACUCUUAUUAUUUAUGAUAUCAG...................................... len:28 al:1
............................................UUAUUUAUGAUAUCAGUUCCAuCAGCUCACC....................... len:31 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGC............................ len:26 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCA.............................. len:24 al:2
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCA......................... len:29 al:16
............................................UUAUUUAUGAUAUCAGUUCCACCAGCc........................... len:27 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCACC....................... len:31 al:7
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCc......................... len:29 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCgC.......................... len:28 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCU........................... len:27 al:9
........................................................UCAGUUCCACCAGCUCACCAAg.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCAcU.................... len:22 al:1
........................................................aCAGUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCgCCAAUA................... len:23 al:1
........................................................cCAGUUCCACCAGCUCACCAAU.................... len:22 al:3
........................................................UCAGUUCCACCAaCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAuCUCACCAAU.................... len:22 al:18
........................................................UCgGUUCCACCAGCUCACCAAUAU.................. len:24 al:3
........................................................UCAGUUCCACCAGCUCgCCAAU.................... len:22 al:1
........................................................UCAGUUCCACuAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUC.......................... len:16 al:1
........................................................UCAGUUCCgCCAGCUCACC....................... len:19 al:1
........................................................UCAGUUCCACCAGCUCACa....................... len:19 al:2
........................................................UCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:60
........................................................UCAGUUCCACCAGCUCACCAAcA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUA................... len:23 al:901
........................................................UCAGUUCCACCAGCcCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCU........................... len:15 al:4
........................................................UCAGUUCCAuCAGCUCACCAAUAU.................. len:24 al:1
........................................................UuAGUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGcUCCACCAGCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCu...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCAC........................ len:18 al:2
........................................................UCAGUUCCACCAGCUCACCAgU.................... len:22 al:16
........................................................UCAGUUCCACCAGCUCACCAAUu................... len:23 al:590
........................................................UCAGUUCCACCAGCUCACCuAUAU.................. len:24 al:1
........................................................UCgGUUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUc................... len:23 al:23
........................................................UCAGUUCCACCAGCUCACCAgUAU.................. len:24 al:1
........................................................UCAGUUCCACCAGCUCACCAuUA................... len:23 al:4
........................................................UCAGUUCCACCAGCUCACCAAUgU.................. len:24 al:2
........................................................UCAGcUCCACCAGCUCACCAAUAU.................. len:24 al:1
........................................................UCAGUUCCACCAGCUCACCgAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAUa................. len:25 al:1
........................................................UCAGUUCCACCAGCUCACCAAU.................... len:22 al:1203
........................................................cCAGUUCCACCAGCUCACCAAUA................... len:23 al:3
........................................................UCgGUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCgAUA................... len:23 al:1
........................................................UCAGUUCCACCgGCUCACCA...................... len:20 al:1
........................................................aCAGUUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAUu................. len:25 al:14
........................................................UCAGUUCCACCAGCUCACCAAUAUc................. len:25 al:1
........................................................UCAGUUCCACCAGCcCACCAAUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAAc.................... len:22 al:57
........................................................UCAGUUCCACCAGCUCAgCA...................... len:20 al:2
........................................................UCAGUUCCACCAGCUCACCAAUuU.................. len:24 al:35
........................................................UCAGUUCCACCAGCUCAgC....................... len:19 al:4
........................................................UCAGcUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCAgCAAU.................... len:22 al:8
........................................................UCAGUUCCACCAGCUCACC....................... len:19 al:118
........................................................UCAGUUCCgCCAGCUCACCAAUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCuAU.................... len:22 al:4
........................................................UCAGUUCCACCAGCUCACCAu..................... len:21 al:2
........................................................UCAGUUCCACCAGCUCACCAuU.................... len:22 al:1
........................................................UCAGUUCCgCCAGCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACu....................... len:19 al:8
........................................................UCAGUUCCACCAGCUCA......................... len:17 al:4
........................................................UCAGUUCCACCAGCUCACCAAa.................... len:22 al:5
........................................................UCAGUUCCACCAGCUCACCAAUg................... len:23 al:2
........................................................UCAGUUCCACCgGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCA...................... len:20 al:104
........................................................UCAGUUCCACCAGCUCACCAA..................... len:21 al:42
........................................................UCAGUUCCACCgGCUCACCAAU.................... len:22 al:1
.........................................................CAGUUCCACCAGCUCACCAAU.................... len:21 al:2
.........................................................CAGUUCCACCAGCUCACCAAUA................... len:22 al:1
.........................................................CAGUUCCACCAGCUCACC....................... len:18 al:1
...........................................................GUUCCACCAGCUCACCAAUA................... len:20 al:1
............................................................UUCCACCAGCUCACCAAU.................... len:18 al:3
............................................................UUCCACCAGCUCACCAAUAU.................. len:20 al:2
............................................................UUCCACCAGCUCACCAAUA................... len:19 al:17
............................................................UUCCACCAGCUCACCAAUuU.................. len:20 al:1