Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000001:1459402-1459496 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_425.ps.pdf
Locus Name: Cluster_425
UUGACUUUGUUUGGUUUUUACCUGCCUCUUGUUCUUCUUCCAUAUUCAUCUUGAAAGAAGUGCAAGUGGUAGAGAAAUACCAAACUGAAAUGCAU
........(((((((.(((..(((((.(((((.((((((.((.........)).)))))).))))).)))))..))).))))))).......... (-32.20)
....................aCUGCCUCUUGUUCUUCUUCCA..................................................... len:22 al:1
....................CCUGCCUCUUGUUCUUCUUaCA..................................................... len:22 al:2
....................CCUGCCUCUUGUUCUUCUUC....................................................... len:20 al:1
....................CCUGCCUCUUGUUCUUCUUCCA..................................................... len:22 al:8
....................CCUGCCUCUUGUUCUUCUUaC...................................................... len:21 al:1
....................CCUGCCUCUUGUUCUUCUUCC...................................................... len:21 al:2
.....................CUGCCUCUUGUUCUUCUUCCA..................................................... len:21 al:2
......................UGCCUCUUGUUCUUCUUCC...................................................... len:19 al:1
......................UGCCUCUUGUUCUUCUUCCA..................................................... len:20 al:2
......................UGCCcCUUGUUCUUCUUCC...................................................... len:19 al:1
............................................UUCAUCUUGAAAGAAGUGCAAGUGGUAGAG..................... len:30 al:1
..................................................UUGAAAGAAGUGCAAGUGGUAGA...................... len:23 al:1
..................................................UUGAAAGAAGUGCAAGUGGUA........................ len:21 al:1
..................................................UUGAAAGAAGUGCAAGUGGU......................... len:20 al:1
..................................................UUGAAAGAAGUGCAAGUGGUAGu...................... len:23 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGAu..................... len:23 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGAGA.................... len:24 al:2
...................................................UGAAAGAAGUGCAAGUGGc......................... len:19 al:3
...................................................UGAAAGAAGUGCAAGUGGUAGAGu.................... len:24 al:4
...................................................UGAAAGAAGUGCAgGUGGUAGAG..................... len:23 al:1
...................................................cGAAAGAAGUGCAAGUGGU......................... len:19 al:1
...................................................UGAAAGAAGUGCAAGUGGUAa....................... len:21 al:1
...................................................UGAAAGAAGUGCAAGUGGU......................... len:19 al:19
...................................................UGAAAGAAGUGCAAGUGGUAGAG..................... len:23 al:13
...................................................UGAAAGAAGUGCAAGUGGUAGA...................... len:22 al:28
...................................................UGAAAGAAGUGCAAGUGGUAG....................... len:21 al:20
....................................................GAAAGAAGUGCAAGUGGUAGAG..................... len:22 al:2
....................................................GAAAGAAGUGCAAGUGGUAGAGA.................... len:23 al:4
....................................................cAAAGAAGUGCAAGUGGUAGAGA.................... len:23 al:2
....................................................cAAAGAAGUGCAAGUGGUAGAG..................... len:22 al:1
....................................................GAAAGAAGUGCAAGUGGUAGA...................... len:21 al:3
.....................................................AAAGAAGUGCAAGcGGUAGAGA.................... len:22 al:9
.....................................................AAuGAAGUGCAAGUGGUAG....................... len:19 al:1
.....................................................AuAGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGU......................... len:17 al:11
.....................................................AAAGAAGUGCAAGcGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAuA.................. len:24 al:3
.....................................................AAAGAAGUGCAAGUGGUAGu...................... len:20 al:5
.....................................................AAAGAAGUGCAAGUGGUAG....................... len:19 al:415
.....................................................AAgGAAGUGCAAGUGGUAGA...................... len:20 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAuA.................... len:22 al:5
.....................................................AAAGcAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................gAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:9
.....................................................AAAGAgGUGCAAGUGGUAG....................... len:19 al:1
.....................................................AAAGAgGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAgGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AAAGAAGUGCcAGUGGUAGAGA.................... len:22 al:1
.....................................................AgAGAAGUGCAAGUGGUAGAGA.................... len:22 al:4
.....................................................AAAGAAGUGCAAGUGGUAu....................... len:19 al:5
.....................................................AAAGAAuUGCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCgAGUGGUAGA...................... len:20 al:1
.....................................................AAAGgAGUGCAAGUGGUAGAGA.................... len:22 al:3
.....................................................AAAGAAGUGCAAGUGGUAGAcA.................... len:22 al:1
.....................................................AAAGAAGUGCgAGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGCgAGUGGUAGAG..................... len:21 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGg.................... len:22 al:11
.....................................................AAAGAAaUGCAAGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGcGGUAG....................... len:19 al:1
.....................................................gAAGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGaGGUAGAGA.................... len:22 al:1
.....................................................AAgGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAgGAAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGc.................... len:22 al:22
.....................................................gAAGAAGUGCAAGUGGU......................... len:17 al:1
.....................................................AAcGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AAAGAAGUGCAAGUGGcAGAGA.................... len:22 al:6
.....................................................AAAGAcGUGCAAGUGGUAGAGA.................... len:22 al:3
.....................................................AAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:1731
.....................................................AAAGAAGUGCAAGUGGUgG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAa..................... len:21 al:10
.....................................................AAAGAAGUGCAcGUGGUAGAGA.................... len:22 al:2
.....................................................AcAGAAGUGCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAcGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGA...................... len:20 al:69
.....................................................AAAGAAGUGCAAGUGGUAGAGAu................... len:23 al:22
.....................................................AAAGAAGUGCAAaUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAu..................... len:21 al:7
.....................................................AAAGAAGUGCAuGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGuA................... len:23 al:1
.....................................................AAAGgAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUaCAAGUGGUAGA...................... len:20 al:7
.....................................................AAAGAAGUGCAAGUGGUA........................ len:18 al:26
.....................................................AAAGAAGUGCAAGUGGcAG....................... len:19 al:3
.....................................................AAAGAgGUGCAAGUGGUAGAGA.................... len:22 al:4
.....................................................AAAGAAGUGCcAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGaUAGAGA.................... len:22 al:3
.....................................................AAAGAAGUGCAAGUGGUAGAGAA................... len:23 al:9
.....................................................AAAGgAGUGCAAGUGGUAGA...................... len:20 al:1
.....................................................AAAGAAGUGCAAGUGGUgGAGA.................... len:22 al:4
.....................................................AAAGAAGUGCAgGUGGUAGAGA.................... len:22 al:4
.....................................................AAAGAAGUGCAAGUGGUAGcG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAG..................... len:21 al:375
.....................................................AAcGAAGUGCAAGUGGUAGAGA.................... len:22 al:22
.....................................................AAAGAAGUGCAAGUGGUAGAGu.................... len:22 al:331
.....................................................cAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAa....................... len:19 al:13
.....................................................AgAGAAGUGCAAGUGGUAG....................... len:19 al:3
.....................................................AAAGAAGUGuAAGUGGUAGAGA.................... len:22 al:3
.....................................................AAAGAAGUGCgAGUGGUAGAGA.................... len:22 al:5
.....................................................gAAGAAGUGCAAGUGGUAG....................... len:19 al:1
......................................................AAGAAGUGCAAGUGGUAGAGA.................... len:21 al:1
.......................................................AGAAGUGCAAGUGGUAGAGu.................... len:20 al:2
.........................................................AAGUGCAAGUGGUAGAGA.................... len:18 al:1