Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000014:2594743-2594833 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4094.ps.pdf
Locus Name: Cluster_4094
GCUUUCUGUCAUUGUUGUACUGAAACAUUAACACGCCAAUGAUGUUAUCCGUGGUGCGUUAUUGUUUCGGUGUAACUAUGUCAUCAACCAA
......((.(((.((((((((((((((.((((.(((((..(((...)))..))))).)))).)))))))))))))).))).))........ (-31.40)
.................aACUGAAACAUUAACACGCCAAUGAUG............................................... len:27 al:1
....................UGAAACAcUAACACGCCAAUGA................................................. len:22 al:1
....................UGgAACAUUAACACGCCAAUGA................................................. len:22 al:3
....................UGAAACAUUAACACGCCAA.................................................... len:19 al:12
....................UGgAACAUUAACACGCCAAUGAU................................................ len:23 al:1
....................cGAAACAUUAACACGCCAAUGAU................................................ len:23 al:1
....................UGAAACAUUAACACGCCAAUG.................................................. len:21 al:107
....................UGAAACAUUAACACGCCAAUGAUc............................................... len:24 al:4
....................cGAAACAUUAACACGCCAAUGA................................................. len:22 al:1
....................UGAgACAUUAACACGCCAAUGA................................................. len:22 al:1
....................UGAAACAUUAACACGCCAAUGg................................................. len:22 al:1
....................UGAAgCAUUAACACGCCAAUGAU................................................ len:23 al:2
....................UGAAACAUUAACACGCCgAUGA................................................. len:22 al:1
....................UGAAACAUUAACACGCCAAUGgU................................................ len:23 al:6
....................UGAAACAUUAACACGCCAAU................................................... len:20 al:11
....................UGAAACAUUAACACGCCAAUGAUu............................................... len:24 al:161
....................UGAAACAUUAACACGCCAgUGA................................................. len:22 al:1
....................UGAAACAUUAACACGCgAAUGAU................................................ len:23 al:1
....................cGAAACAUUAACACGCCAAUG.................................................. len:21 al:1
....................UGAAACAUUAACACGCCAAUGAUcU.............................................. len:25 al:1
....................UGAAACAUUAACACGCCg..................................................... len:18 al:1
....................UGAAACAUUAACACGCCu..................................................... len:18 al:3
....................UGAAACAUUAgCACGCCAA.................................................... len:19 al:1
....................UGAAACAUUAACACGCCAAUGAUuU.............................................. len:25 al:4
....................UGAAACAUUAACACGCCAAUa.................................................. len:21 al:4
....................UGAAACAcUAACACGCCAAUG.................................................. len:21 al:1
....................UGAAACAUUAACACGCCAAUGAU................................................ len:23 al:210
....................UGAAACAUUAACACGCCAAUGA................................................. len:22 al:139
....................UGAAACcUUAACACGCCAAUGAU................................................ len:23 al:1
....................UGAAACAUUAACAuGCCAAUGAU................................................ len:23 al:1
....................UGAAgCAUUAACACGCCA..................................................... len:18 al:1
....................UGAAACAUUAACACGCCAAUGAUa............................................... len:24 al:9
....................UGAAgCAUUAACACGCCAAUG.................................................. len:21 al:2
....................UGAAcCAUUAACACGCCAAUGAU................................................ len:23 al:2
....................UGAAACgUUAACACGCCAAUGA................................................. len:22 al:1
....................UGAAACAUUAACACGCCAuU................................................... len:20 al:2
....................UGAAACAUUgACACGCCAAUGA................................................. len:22 al:2
....................UGAAACAUUAACACGCCA..................................................... len:18 al:11
....................UGAAACAUUAACACGCCAAc................................................... len:20 al:1
....................UGAAACAUUAACACGCCAAUGAUaU.............................................. len:25 al:1
....................UGAAACAUUAACACGCCAAUGAa................................................ len:23 al:3
....................UGAAACAUUAACACGCCAAUGu................................................. len:22 al:7
....................UGAAACAUUAgCACGCCAAUGAU................................................ len:23 al:1
....................UGAAACAUUAACACGCCAAUGAc................................................ len:23 al:10
........................................GAUGUUAUCCGUGGcGCGUUAUUGUUUCGGU.................... len:31 al:1
..........................................UGUUAUCCGUGGcGCGUUAUU............................ len:21 al:1
.................................................CGUGGUGCGUUAUUGUUUCGGU.................... len:22 al:25
.................................................CGUGGUGCGUUAUUGUUUCGGa.................... len:22 al:1
.................................................CGUGGcGCGUUAUUGUUUCGGU.................... len:22 al:332
.................................................CGUGGUGCGUUAUUGUUUCGGUu................... len:23 al:1
.................................................CGUGGcGCGUUAUUGUUU........................ len:18 al:3
.................................................CGUGGUGCGUUAUUGUUUuGGU.................... len:22 al:1
.................................................CGUGGUGCGcUAUUGUUUCGGU.................... len:22 al:1
.................................................CGUGGUGCGUUcUUGUUUCGGU.................... len:22 al:1
.................................................CGUGGcGCGUUAUUGUUUC....................... len:19 al:37
.................................................CGUGGcGCGUUAUUGUUUCGG..................... len:21 al:7
.................................................CGUGGUGCGUUAUUGUUUCGGUuU.................. len:24 al:2
..................................................GUGGcGCGUUAUUGUUUCGGU.................... len:21 al:3
...................................................UGGcGCGUUAUUGUUUCG...................... len:18 al:1
...................................................UGGcGCGUUAUUGUUUCGGU.................... len:20 al:2