Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000014:2366038-2366132 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4092.ps.pdf
Locus Name: Cluster_4092
UGGCUCAUGGCUGUAUGCUUAACUUUCGCAGGUUAAAAACUCCUUUAGUGAAUUUUUAGCCCGCGGAAGUUGCGUAAACAGUUCUUCUCUGUACA
........((((((.(((.((((((((((.(((((((((.(((....).)).))))))))).)))))))))).))).))))))............ (-31.90)
UGGCUCAUGGCUGUAUGCUU........................................................................... len:20 al:7
UGGCUCAUGGCUGUAUGCaU........................................................................... len:20 al:1
UGGCUCAUGGCUGUAUGCUc........................................................................... len:20 al:1
....................AACUUUCGCAGGUcAAAAACUCC.................................................... len:23 al:2
....................AACUUUCGCAGGUUAAAAACUC..................................................... len:22 al:37
....................AACUUUCGCAGGUUAAgAACUC..................................................... len:22 al:1
....................AACUUUCGCAGGUUAAAAACUCaU................................................... len:24 al:1
....................AACUUUuGCAGGUUAAAAACUCC.................................................... len:23 al:1
....................AACUUUCGCAGGUUAAAAACUCa.................................................... len:23 al:20
....................AACUUUCGCAGGUUAAAAACU...................................................... len:21 al:2
....................AACUUcCGCAGGUUAAAAACUC..................................................... len:22 al:1
....................AACUUcCGCAGGUUAAAAACUCC.................................................... len:23 al:1
....................AACUUUCGCAGGUUAAAAACUCCa................................................... len:24 al:10
....................AACUUUCGCAGGUUAAAAACUCC.................................................... len:23 al:112
....................AACUcUCGCAGGUUAAAAACUCC.................................................... len:23 al:3
....................AACUUUCGCAGGUUAAAAACUu..................................................... len:22 al:1
....................cACUUUCGCAGGUUAAAAACUCC.................................................... len:23 al:1
....................AACUUUCGCAGGUUAAAAACUCu.................................................... len:23 al:10
.....................ACUUUCGCAGGUUAAAAACUCa.................................................... len:22 al:1
.....................ACUUUCGCAGGUUAAAAACUCC.................................................... len:22 al:1
.......................UUUCGCAGGUUAAAAACUCC.................................................... len:20 al:1
...........................................UUUAGUGAAUUUUUAGCCCGCGGAAGUUGC...................... len:30 al:2
...........................................UUUAGUGAAUUUUUAGCCCGCGGAAGUUGu...................... len:30 al:1
..................................................AAUUUUcAGCCCGCGGAAGUUGC...................... len:23 al:1
..................................................AAUUUUUAGCCCGCGGAAGcUGC...................... len:23 al:3
..................................................AAUUUUUAGCCCGCGGAA........................... len:18 al:3
..................................................AAUUUUUgGCCCGCGGAAGUUGC...................... len:23 al:2
..................................................AAcUUUUAGCCCGCGGAAGUUGC...................... len:23 al:7
..................................................AAUUUUUAGCCCGCGGAAGUUaC...................... len:23 al:1
..................................................AAUUUcUAGCCCGCGGAAGUUGC...................... len:23 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUa....................... len:22 al:1
..................................................AAUUUUUAGCCCGCGGA............................ len:17 al:1
..................................................cAUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUGCu..................... len:24 al:4
..................................................AAUUUUUAGCCCGCGGAAGUUGCc..................... len:24 al:1
..................................................AcUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:1
..................................................AuUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:2
..................................................AAUUcUUAGCCCGCGGAAGUUGC...................... len:23 al:2
..................................................AAUUUUUAGCCCGCGGgAGUUGC...................... len:23 al:1
..................................................AAUUUUUAuCCCGCGGAAGUUGC...................... len:23 al:2
..................................................AAUUUUUAGCCCGCGGAAGUUGCa..................... len:24 al:2
..................................................AAUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:313
..................................................AAUUUUUAaCCCGCGGAAGUUGC...................... len:23 al:2
..................................................AAUUUUUAGCuCGCGGAAGUUGC...................... len:23 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUGa...................... len:23 al:10
..................................................AAUUUUUAGCCCGCGGAAGUUG....................... len:22 al:3
..................................................AAUUgUUAGCCCGCGGAAGUUGC...................... len:23 al:1
..................................................AAUUUUUAGCCCGCGGAAGU......................... len:20 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUGu...................... len:23 al:51
...................................................AUUUUUAGCCCaCGGAAGUUGC...................... len:22 al:4
...................................................uUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:6
...................................................AcUUUUAGCCCGCGGAAGUUGC...................... len:22 al:11
...................................................AUUUUUAGCCCGCGGAcGUUGC...................... len:22 al:2
...................................................AUUUUUAaCCCGCGGAAGUUGC...................... len:22 al:5
...................................................AUUUUUAGCCCGCGGAgGUUGC...................... len:22 al:24
...................................................AUUUcUAGCCCGCGGAAG.......................... len:18 al:1
...................................................AUUUUUAGCCCGCGGAuGUUGC...................... len:22 al:3
...................................................AUUUUUAGCCCGaGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCuCGCGGAAGUUGC...................... len:22 al:5
...................................................AUUUUUAGCCCGCGGAAGUUGCaU.................... len:24 al:7
...................................................AUUUUUAGCuCGCGGAAGU......................... len:19 al:1
...................................................AUUUUcAGCCCGCGGAAGUUGC...................... len:22 al:20
...................................................AUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:7737
...................................................AUUUUUAGCCCGCGGAAu.......................... len:18 al:6
...................................................AUUUUUAGCCCGCGGAAGUa........................ len:20 al:1
...................................................AUUUUUAGuCCGCGGAAGUUG....................... len:21 al:1
...................................................AUUUUUAGCCCGCGGcAGUUGC...................... len:22 al:4
...................................................AUUUcUAGCCCGCGGAAGUUGC...................... len:22 al:6
...................................................AUUUUUAGCCCGCGaAAGUUG....................... len:21 al:1
...................................................AUUUUUAGCCCGCGGAAGU......................... len:19 al:46
...................................................AUUUUaAGCCCGCGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUc........................ len:20 al:5
...................................................AUUUUUAGCCCGCGuAAGUUGC...................... len:22 al:1
...................................................gUUUUUAGCCCGCGGAAGUU........................ len:20 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGu...................... len:22 al:1214
...................................................AUUUUUAGCCCuCGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUgGCCCGCGGAAGUUGC...................... len:22 al:24
...................................................AUUUUUAGCCCGCGGAAGUUGCu..................... len:23 al:99
...................................................AUUUUUAGCCCGCGGAAGUUaC...................... len:22 al:61
...................................................AUUUUUAGCCCGCGaAAGUUGC...................... len:22 al:4
...................................................AUUUUUAGCCCGCGGAAGcUGC...................... len:22 al:18
...................................................AUUUUUAGCCCGCGGAAGUaGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGg...................... len:22 al:5
...................................................gUUUUUAGCCCGCGGAAGUUG....................... len:21 al:1
...................................................AUUUUUAGCCCGCGGAAuUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGCuU.................... len:24 al:5
...................................................AUUUUUAGCCCGCGGAAGUU........................ len:20 al:79
...................................................AUUUUUAGCaCGCGGAAGUUGC...................... len:22 al:2
...................................................AUUUUUgGCCCGCGGAAGUUG....................... len:21 al:1
...................................................AUUcUUAGCCCGCGGAAGUUGC...................... len:22 al:8
...................................................AUUUUUAGCCCGCGGAAG.......................... len:18 al:13
...................................................AUUUUUAGCCCGuGGAAGUUGC...................... len:22 al:3
...................................................AUUUUUAGCCCGCGGAAGUUa....................... len:21 al:8
...................................................AUUUUUAGuCCGCGGAAGUUGC...................... len:22 al:14
...................................................AUcUUUAGCCCGCGGAAGUUGC...................... len:22 al:15
...................................................AUUUUUAGCCCGCGGAAGUUGCa..................... len:23 al:145
...................................................AUUUUUAGCCCGCGGAAGgU........................ len:20 al:1
...................................................AUUUUUAGCCCGCGGAAGUcGC...................... len:22 al:16
...................................................AUUUUUAGCCuGCGGAAGUUGC...................... len:22 al:8
...................................................AUUUUUAGCCCGCGGAAGUUcC...................... len:22 al:2
...................................................AUUUUUAGCCCGCGGAAGaUGC...................... len:22 al:2
...................................................AUUUUUAGCCCGCGGAAGc......................... len:19 al:3
...................................................cUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:13
...................................................AUUUUUAGCCCGCaGAAGUUGC...................... len:22 al:7
...................................................AUUUUUcGCCCGCGGAAGUUGC...................... len:22 al:11
...................................................AUUUUUAGCCCGCGGAAGUUG....................... len:21 al:129
...................................................AUUUUUAGCCCGCGGAAGUUGCc..................... len:23 al:9
...................................................AUUUUUAGCCCGCGGAAGUUGa...................... len:22 al:147
...................................................AUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
...................................................AUUUUUAGCCCGCGGA............................ len:16 al:1
...................................................AUUUUUAGCuCGCGGAAGUUG....................... len:21 al:1
...................................................AUUUUUAGCCaGCGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGgAGUUGC...................... len:22 al:13
...................................................AaUUUUAGCCCGCGGAAGUUGC...................... len:22 al:2
...................................................AUUgUUAGCCCGCGGAAGUUGC...................... len:22 al:1
...................................................gUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:18
...................................................AUUUUUuGCCCGCGGAAGUUGC...................... len:22 al:3
...................................................AUUUUUAuCCCGCGGAAGUUGC...................... len:22 al:3
...................................................AUUUcUAGCCCGCGGAAGUUG....................... len:21 al:1
...................................................AUUUUUAGCCCGCGGAAGUcG....................... len:21 al:1
...................................................AUUUUUAGCCCGgGGAAGUUGC...................... len:22 al:1
....................................................UUUUUAGCCCGCGGAAGUUG....................... len:20 al:1
....................................................UUUUUAGCCCGCGGAAGUUGC...................... len:21 al:22
....................................................UUUUUAGCCCGCGGAAGUUGu...................... len:21 al:7
....................................................aUUUUAGCCCGCGGAAGUUGC...................... len:21 al:15
.....................................................aUUUAGCCCGCGGAAGUUGC...................... len:20 al:2
.....................................................UUUUAGCCCGCGGAAGUUGa...................... len:20 al:1
.....................................................UUUUAGCCCGCGGAAGUUGCaU.................... len:22 al:1
.....................................................UUUUAGCCCGCGGAAGUUGu...................... len:20 al:6
.....................................................UUUUAGCCCGCGGAAGUU........................ len:18 al:1
.....................................................UUUUAGCCCGCGGAAGaUGC...................... len:20 al:1
.....................................................UUUUAGCCCGCGGAAGUUGC...................... len:20 al:27
.....................................................UUUUAGCCCGCGGAAGUUc....................... len:19 al:1
......................................................UUUAGCCCGCGGAAGUUGC...................... len:19 al:6
......................................................UUUAGCCCGCGGAAGUUGCa..................... len:20 al:1
......................................................UUUAGCCCGCGGAAGUUGCu..................... len:20 al:1
........................................................UAGCCCGCGGAAGUUGCa..................... len:18 al:2