Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000000:173876-173969 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_4.ps.pdf
Locus Name: Cluster_4
GAGCACUGUGGCUGCAGACCACCAGCUCAAAGCAAUUAAAGAUCUUGCUAUGUUUGAUUGCUGUGAUCUGGUUGUUGGCUUCUACCAGAAUACA
.....((((((..((.(((.(((((.(((.((((((((((.((......)).)))))))))).))).))))).))).))..))).)))...... (-32.20)
GAGCACUGUGGCUGCAGACC.......................................................................... len:20 al:3
.AGCACUGUGGCUGCAGACC.......................................................................... len:19 al:2
.AGCACUGUGGCUGCAGACu.......................................................................... len:19 al:1
....................ACCAGCUCAAAGCAAUUAAAGA.................................................... len:22 al:2
.................................AAUUAAAGAUCUUGCUAUG.......................................... len:19 al:1
....................................UAAAGAUCUUGCUAUGUUUGAUUGCUGU.............................. len:28 al:1
...............................................CUAUGUUUGAUUGCUGUGAUCU......................... len:22 al:1
...................................................GUUUGAUUGCUGUGAUCUGGUUG.................... len:23 al:2
...................................................GUUUGAUUGCUGUGAUCUGGUUaU................... len:24 al:1
....................................................UUUGAUUGCUGUGAUCUGGUUa.................... len:22 al:69
....................................................UUUGAUUGCUGcGAUCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUaUGAUCUGGUUG.................... len:22 al:2
....................................................UUcGAUUGCUGUGAUCUGGUUG.................... len:22 al:6
....................................................UUUGAUUGCUGUGAUCUGGUUGaU.................. len:24 al:9
....................................................UUUGAUUGCUGUGAUCUGGUUGc................... len:23 al:69
....................................................aUUGAUUGCUGUGAUCUGGUUGU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCcGGUUGU................... len:23 al:4
....................................................UUUGAUUGCUGUGAUCUGGUUGUa.................. len:24 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUcU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCUGaU...................... len:20 al:1
....................................................UUUGAUUGCUGUGAUCUGcUUG.................... len:22 al:1
....................................................UUcGAUUGCUGUGAUCUGGUUGU................... len:23 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUGgU.................. len:24 al:1
....................................................UUUGAUUGCUGUGcUCUGGUUG.................... len:22 al:1
....................................................UUUGgUUGCUGUGAUCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUGUGAUCUGGU...................... len:20 al:39
....................................................UUUGAUUGCUGcGAUCUG........................ len:18 al:1
....................................................UUUGAUUGuUGUGAUCUGGUUGU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCUG........................ len:18 al:42
....................................................UgUGAUUGCUGUGAUCUGGUUGU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCUGG....................... len:19 al:7
....................................................UUUGAUUGCUGUGAgCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUGUGgUCUGGUUGU................... len:23 al:7
....................................................UUUGAUUGCaGUGAUCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUG.................... len:22 al:1314
....................................................UUUGAUUGCUGUGAUCUGGc...................... len:20 al:4
....................................................UUUGAUUGCUGUGAUCUGGUcG.................... len:22 al:7
....................................................UUUGAUUGCUGUGAUCUGGUUGa................... len:23 al:102
....................................................UUUGAUUGCUGUGAUCUGGUUu.................... len:22 al:43
....................................................UUaGAUUGCUGUGAUCUGGUUG.................... len:22 al:1
....................................................UcUGAUUGCUGUGAUCUGGUUGU................... len:23 al:3
....................................................UUUGAUUGCUGUGAUCUGGgUG.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUcGU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCcGGUUG.................... len:22 al:2
....................................................UUUGAUUaCUGUGAUCUGGUUGU................... len:23 al:1
....................................................UUUGAUUaCUGUGAUCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUGcGAUCUGGUU..................... len:21 al:2
....................................................UUUGcUUGCUGUGAUCUGGUUGU................... len:23 al:1
....................................................UUUGAUUGCUGUGAUCUGGcUG.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUc..................... len:21 al:8
....................................................UUUGAUUGCUGUGgUCUGGUUG.................... len:22 al:6
....................................................aUUGAUUGCUGUGAUCUGGUUG.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCU......................... len:17 al:2
....................................................cUUGAUUGCUGUGAUCUGGUUGU................... len:23 al:2
....................................................UUUGAUUGaUGUGAUCUGGU...................... len:20 al:1
....................................................cUUGAUUGCUGUGAUCUGGUU..................... len:21 al:1
....................................................cUUGAUUGCUGUGAUCUGGU...................... len:20 al:1
....................................................UUUGAUUGCcGUGAUCUGGUUGU................... len:23 al:5
....................................................UUUGAUUGCUGUGAUCUGGUUGg................... len:23 al:8
....................................................UUUGAUcGCUGUGAUCUG........................ len:18 al:1
....................................................UUUGAUcGCUGUGAUCUGGUUG.................... len:22 al:3
....................................................UUUGAUUGCcGUGAUCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUGUaAUCUGGUUG.................... len:22 al:1
....................................................UUUGcUUGCUGUGAUCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUGUGAUCUGGUUuU................... len:23 al:6
....................................................cUUGAUUGCUGUGAUCUGGUUG.................... len:22 al:3
....................................................UUUGAUUGCUGUGAUCUGGcUGU................... len:23 al:3
....................................................UUUGAUUGCUGUGAUCUa........................ len:18 al:3
....................................................UUUGAUUGCUGUGAcCUGGUUG.................... len:22 al:6
....................................................UUUGAcUGCUGUGAUCUGGUUGU................... len:23 al:4
....................................................UUUGAUUGCUGUGAUCUGGUUc.................... len:22 al:2
....................................................UaUGAUUGCUGUGAUCUGGUUG.................... len:22 al:1
....................................................UUUGAUUGCUGUGAUCUGGUg..................... len:21 al:1
....................................................UUUaAUUGCUGUGAUCUGGUUG.................... len:22 al:2
....................................................UUUGgUUGCUGUGAUCUGGUUGU................... len:23 al:2
....................................................UUUGAUUGCUGUGAUCcG........................ len:18 al:1
....................................................UUUGAUUGCUGUGAcCUGGUUGU................... len:23 al:3
....................................................UcUGAUUGCUGUGAUCUGGUUG.................... len:22 al:2
....................................................UUUGAUUGCUGUGAUCUGu....................... len:19 al:4
....................................................UUUGAUUGCUGUGAUCUGGUUGUU.................. len:24 al:3
....................................................UUUGAUUGCUGUGAUCUGGUUaU................... len:23 al:7
....................................................UUUGAUUGCUGUGAUCUGGUU..................... len:21 al:78
....................................................UUUGAUUGCUGUGAUCUGGUUGU................... len:23 al:838
....................................................UUUGAUUGCUGUGAUCUaGUUG.................... len:22 al:3
....................................................UUUGAUUGCUGgGAUCUGGUUGU................... len:23 al:1
....................................................UUUGAUUGCUGUGAcCUG........................ len:18 al:2
....................................................UUUGAUUGCUGUGAUCaGGUUG.................... len:22 al:1
.....................................................UUGAUUGCUGUGAUCUGGUUG.................... len:21 al:7
.....................................................UUGAUUGCUGUGAUCUGGUUGU................... len:22 al:2
.....................................................UUGAUUGCUGUGAUCUGGUUa.................... len:21 al:1
......................................................UGAUUGCUGUGAUCUGGUUGaU.................. len:22 al:1
......................................................UGAUUGCUGUGAUCUGGUUa.................... len:20 al:1
......................................................UGAUUGCUGUGAUCUGGUUG.................... len:20 al:2
......................................................UGAUUGCUGUGAUCUGGUUGU................... len:21 al:3
......................................................UGAUUGCUGUGAUCUGGUUGa................... len:21 al:1
.......................................................GAUUGCUGUGAUCUGGUUG.................... len:19 al:3
........................................................AUUGCUGUGAUCUGGUUG.................... len:18 al:1
........................................................AUUGCUGUGAUCUGGUUGU................... len:19 al:2
........................................................AUUGCUGUGAUCUGGUUGaU.................. len:20 al:1