Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000000:20372416-20372510 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_372.ps.pdf
Locus Name: Cluster_372
AUAUGCAGUGAAUUAAGACACUAAACCAGACUAGGCUUCAGCAUAUUUAUUUUGUCAAGUCUAGGCUGGUUAGUUUUCUCACUUCACACUUCAAU
.......(((((...(((.(((((.((((.((((((((..(((.........))).)))))))).)))))))))..)))...)))))........ (-26.60)
AUAUGCAGUGAAgUAAGACA........................................................................... len:20 al:1
.UAUGCAGUGAAUUAAGA............................................................................. len:17 al:1
.UAUGCAGUGAAgUAAGACA........................................................................... len:19 al:7
..AUGCAGUGAAgUAAGACA........................................................................... len:18 al:1
.........GAAgUAAGACACUAAACCAGACUAGGCUU......................................................... len:29 al:1
............gUAAGACACUAAACCAGACU............................................................... len:20 al:1
...................ACUAAACCAGACUAGGCUUCAGC..................................................... len:23 al:5
...................ACUAAACCAGACUAGGCUUCAGCA.................................................... len:24 al:1
...................ACUAAACCAGACUAGGCUUCAGCu.................................................... len:24 al:2
....................CUAAACCAGACUAGGCUUu........................................................ len:19 al:7
....................CUAAACuAGACUAGGCUUC........................................................ len:19 al:1
....................CUAAACCAGACUAGGCUUCgGCA.................................................... len:23 al:3
....................CUAAACCAGACUAGGCUUCAGCAU................................................... len:24 al:30
....................CUAAACCAGACUAGGaUUCAGC..................................................... len:22 al:2
....................CUAAACCAGACUAGGCaUCAGC..................................................... len:22 al:1
....................CUAAAaCAGACUAGGCUUCAGC..................................................... len:22 al:1
....................CUAAACCgGACUAGGCUUCAGC..................................................... len:22 al:29
....................CUAAACCAGACUgGGCUUCAGCA.................................................... len:23 al:1
....................CUAAACCAGACUAGGCUUCgGC..................................................... len:22 al:34
....................CUAAACCuGACUAGGCUUCAGC..................................................... len:22 al:6
....................CUAAACCAGACUAGGCcUCAGC..................................................... len:22 al:37
....................aUAAACCAGACUAGGCUUCAGC..................................................... len:22 al:4
....................CUAAACCAGACUAGGCUUaAGC..................................................... len:22 al:2
....................CUAAACCAGACUAGGCUUuAGC..................................................... len:22 al:3
....................uUAAACCAGACUAGGCUUCAGC..................................................... len:22 al:8
....................CUAAACCAGACUAuGCUUCAGCA.................................................... len:23 al:1
....................CUAAACCAGACUAGGCUUCAa...................................................... len:21 al:1
....................CUAAACCAGACUAGGCgUCAGC..................................................... len:22 al:1
....................CUAAACCAGACUAGGCUUCgG...................................................... len:21 al:1
....................CUAAACCAGACaAGGCUUCAGCA.................................................... len:23 al:1
....................CUAAACCAGACUAGGCUUCAaCA.................................................... len:23 al:2
....................CUAuACCAGACUAGGCUUCAG...................................................... len:21 al:1
....................CUAAACCAGACUAGGCUUCAaC..................................................... len:22 al:48
....................CcAAACCAGACUAGGCUUC........................................................ len:19 al:1
....................CUAgACCAGACUAGGCUUCAGC..................................................... len:22 al:22
....................CUAAACCAGgCUAGGCUUCAGCA.................................................... len:23 al:3
....................CUAAACCAaACUAGGCUUCAGC..................................................... len:22 al:6
....................CUAAACCAGACUgGGCUUCAGC..................................................... len:22 al:38
....................CUAAACCAGuCUAGGCUUCAGCA.................................................... len:23 al:1
....................CUAAgCCAGACUAGGCUUCAGCA.................................................... len:23 al:4
....................CUAAACCAGACUAGGCUUCAGCAa................................................... len:24 al:11
....................CUAAACCAGACUAGGCUUCAG...................................................... len:21 al:62
....................CUAuACCAGACUAGGCUUCAGC..................................................... len:22 al:2
....................gUAAACCAGACUAGGCUUCAGC..................................................... len:22 al:5
....................CUAAACCAGACUAGGCUUCAGCAUAUUU............................................... len:28 al:5
....................CgAAACCAGACUAGGCUUCAGC..................................................... len:22 al:1
....................CUAAACCAGACUcGGCUUCAGCA.................................................... len:23 al:1
....................CUAAACCAGcCUAGGCUUCAGC..................................................... len:22 al:2
....................CUAgACCAGACUAGGCUUC........................................................ len:19 al:2
....................CaAAACCAGACUAGGCUUCAGC..................................................... len:22 al:2
....................CUAAACCAGACUAGGCUUCAc...................................................... len:21 al:1
....................CUAAACCAGACgAGGCUUCA....................................................... len:20 al:1
....................CUAAACCAGACcAGGCUUCAGC..................................................... len:22 al:13
....................CUAAACCAGACUAGGCUUCAGCuU................................................... len:24 al:12
....................CUAAACCAGACUAGGCUUCAGg..................................................... len:22 al:4
....................CUAAACCAGAaUAGGCUUCAGCA.................................................... len:23 al:1
....................CUAAAuCAGACUAGGCUUCAGC..................................................... len:22 al:7
....................CUAgACCAGACUAGGCUUCAGCA.................................................... len:23 al:1
....................CUAAuCCAGACUAGGCUUCAGC..................................................... len:22 al:1
....................CUAAACCAGACUAGGCUUCAcC..................................................... len:22 al:1
....................CUcAACCAGACUAGGCUUCAGC..................................................... len:22 al:1
....................CUAAACCAGgCUAGGCUUCAGCAUA.................................................. len:25 al:1
....................CUAAACCAGACgAGGCUUCAGC..................................................... len:22 al:3
....................CUAAACCAGACUAGGCUUCAGCAUAUUcA.............................................. len:29 al:1
....................CUAAACCAGAuUAGGCUUCAGC..................................................... len:22 al:10
....................CUAAACCAGACUAGGCUUCA....................................................... len:20 al:23
....................CUAAACCAGACaAGGCUUCAGC..................................................... len:22 al:2
....................CUAAACCAGACUAGGC........................................................... len:16 al:1
....................CUAAACCAGgCUAGGCUUCAGC..................................................... len:22 al:42
....................CUAAACCAGACUAGGCUUCAGuA.................................................... len:23 al:1
....................CUAAACCcGACUAGGCUUCAGCAU................................................... len:24 al:1
....................CUAAACCAGACUAaGCUUCAGC..................................................... len:22 al:6
....................CUAAACCAGACUAGGCUUCAGCAUA.................................................. len:25 al:8
....................CUAAACCAGACUAGGCUUCuGC..................................................... len:22 al:1
....................CUAAACCAGAaUAGGCUUCAGC..................................................... len:22 al:8
....................CUAAgCCAGACUAGGCUUC........................................................ len:19 al:1
....................CcAAACCAGACUAGGCUUCAGC..................................................... len:22 al:20
....................CUAAACCAGACUAGGCUUC........................................................ len:19 al:270
....................uUAAACCAGACUAGGCUUCAGCAU................................................... len:24 al:1
....................CUAAACCAGACUAGGCU.......................................................... len:17 al:1
....................CUAAACCAGACUAGGCUUCAGC..................................................... len:22 al:9870
....................CUAAAuCAGACUAGGCUUCAGCA.................................................... len:23 al:1
....................CUAAACCAGACUAGGCUUCAGCAUAU................................................. len:26 al:1
....................CUAAACCAGACUAGGCUUCAGCu.................................................... len:23 al:288
....................CUAAACCAGACUAGGCUUCAGCAc................................................... len:24 al:2
....................CUAAACCAGACUAGGCUUCAGCAUu.................................................. len:25 al:4
....................CUAAACCAGACUcGGCUUCAGC..................................................... len:22 al:4
....................CUAAcCCAGACUAGGCUUCAGC..................................................... len:22 al:11
....................CUAAACCAGACUuGGCUUCAGC..................................................... len:22 al:1
....................CUAAACCcGACUAGGCUUCAGC..................................................... len:22 al:5
....................CUAAACCAGACUAGGCUUCAGCg.................................................... len:23 al:5
....................CUAAACCAGACUAGGCUaCAGC..................................................... len:22 al:1
....................CUAAACCAGACUAaGCUUCAGCA.................................................... len:23 al:1
....................CUgAACCAGACUAGGCUUCAGCA.................................................... len:23 al:2
....................CUAAACCAGACUAGGCUcCAGC..................................................... len:22 al:25
....................CUgAACCAGACUAGGCUUCAGC..................................................... len:22 al:11
....................CUAAACCAGACUAGGCUUa........................................................ len:19 al:1
....................CUAAACCAGACUAuGCUUCAGC..................................................... len:22 al:4
....................CUAAACCAGACUAGGCUUCcGC..................................................... len:22 al:4
....................CUAAACCAGACUAGaCUUCAGC..................................................... len:22 al:2
....................CUAAACuAGACUAGGCUUCAGCA.................................................... len:23 al:2
....................CUAAAuCAGACUAGGCUUC........................................................ len:19 al:1
....................CUAAACCAGACUAGGCUUCAGu..................................................... len:22 al:1118
....................CUAAACCAGcCUAGGCUUC........................................................ len:19 al:1
....................CUAAACCAGACUAGGuUUCAGC..................................................... len:22 al:1
....................CUAAACCAGACUAGGCUUCAGCA.................................................... len:23 al:863
....................CUAAACCAGACUAGaCUUC........................................................ len:19 al:1
....................CUAAcCCAGACUAGGCUUCAGCA.................................................... len:23 al:1
....................CUAAACCAGACUAGGCUUCAuC..................................................... len:22 al:2
....................CUAAACCAGACUAGGuUU......................................................... len:18 al:1
....................CUAcACCAGACUAGGCUUCAGC..................................................... len:22 al:15
....................CUAAACCuGACUAGGCUUCAGCA.................................................... len:23 al:3
....................CUAAACCAGACUAGGCUUCAGCc.................................................... len:23 al:31
....................CUAAACCAGACgAGGCUUC........................................................ len:19 al:1
....................CUAAACCAGACUAGGCUUgAGC..................................................... len:22 al:1
....................CUAAgCCAGACUAGGCUUCAGC..................................................... len:22 al:20
....................CUAAACCAGACUAGGCUUCAGa..................................................... len:22 al:214
....................CUAAAuCAGACUAGGCUUCAGCAUAUUUA.............................................. len:29 al:2
....................CUAAACCAGACUAGGCUUCu....................................................... len:20 al:2
....................CUAAACCAGACUAGGCUcCAGCA.................................................... len:23 al:2
....................CUAAACCgGACUAGGCUU......................................................... len:18 al:1
....................CUAAACCAGACUAGGCUUCAGaAU................................................... len:24 al:1
....................CUAAACuAGACUAGGCUUCAGC..................................................... len:22 al:4
....................uUAAACCAGACUAGGCUUCAGCAUA.................................................. len:25 al:1
....................uUAAACCAGACUAGGCUUCAGCA.................................................... len:23 al:1
....................CUAAACCAGACUAGGCUUCAGCAUAUUUAUU............................................ len:31 al:1
....................CUAAACCAGACUAGGCUUCcGCA.................................................... len:23 al:1
....................CUAAACCAGACUAGGCcUCAGCA.................................................... len:23 al:5
....................CUAAACCAGACUAGGCUU......................................................... len:18 al:29
....................CUAAACaAGACUAGGCUUCAGC..................................................... len:22 al:2
.....................UAAACCAGACUgGGCUUCAGCA.................................................... len:22 al:1
.....................UAAACCAGACUAGGCUaCAGC..................................................... len:21 al:1
.....................UAAACCAGACUAGGCUUCAGa..................................................... len:21 al:24
.....................UAAACCAGACUAGGCUUCAGu..................................................... len:21 al:159
.....................UAAACCAGACUAGGCUUCAGCA.................................................... len:22 al:31
.....................UAAACCAGACUAGGCUUCAaC..................................................... len:21 al:8
.....................UAAACCAGuCUAGGCUUCAGC..................................................... len:21 al:1
.....................UAAACCAGACUAGGCcUC........................................................ len:18 al:1
.....................UAAcCCAGACUAGGCUUCAGC..................................................... len:21 al:1
.....................UAgACCAGACUAGGCUUCAGC..................................................... len:21 al:3
.....................UAAACCAGACUAGGCUUCAGC..................................................... len:21 al:1331
.....................UAAACCAGAaUAGGCUUCAGC..................................................... len:21 al:2
.....................UAAACCAGACUAGaCUUCAGC..................................................... len:21 al:1
.....................UAAACCgGACUAGGCUUCAGC..................................................... len:21 al:3
.....................UAAACCAGACUAGGCUUC........................................................ len:18 al:41
.....................UAAACCAGcCUAGGCUUCAGC..................................................... len:21 al:1
.....................UAAACCAGACUAGGCUUCgGC..................................................... len:21 al:9
.....................UAAACCAaACUAGGCUUCAGC..................................................... len:21 al:1
.....................UAcACCAGACUAGGCUUCAGC..................................................... len:21 al:1
.....................UAAACCAGACUAGGCUUCAGg..................................................... len:21 al:1
.....................UAAACCuGACUAGGCUUCAGC..................................................... len:21 al:1
.....................UAAACCAGACUAGGCUUCAGCu.................................................... len:22 al:11
.....................cAAACCAGACUAGGCUUCAGCAUA.................................................. len:24 al:1
.....................UAAgCCAGACUAGGCUUCAGC..................................................... len:21 al:6
.....................UgAACCAGACUAGGCUUCAGC..................................................... len:21 al:5
.....................UAAACuAGACUAGGCUUC........................................................ len:18 al:1
.....................UAAACCAGACcAGGCUUCAGC..................................................... len:21 al:2
.....................UcAACCAGACUAGGCUUCAGC..................................................... len:21 al:1
.....................UAAACCcGACUAGGCUUCAGC..................................................... len:21 al:3
.....................UAAACCAGACUAGGCUUCAGCg.................................................... len:22 al:2
.....................UAAACCAGACUAGGCcUCAGC..................................................... len:21 al:7
.....................UAAACCAGACUAGGCUUa........................................................ len:18 al:1
.....................UAAACCAGACUAGGCUUCgGCA.................................................... len:22 al:1
.....................UAAACCAGACUAGGCUUCAGCAUA.................................................. len:24 al:9
.....................UAAACCAGACUAGGCUUCAGCc.................................................... len:22 al:2
.....................aAAACCAGACUAGGCUUCAGC..................................................... len:21 al:4
.....................UAAACCAGACUAGGCUcCAGC..................................................... len:21 al:3
.....................UAAACCAGACUAGGCUUCAGCAa................................................... len:23 al:1
.....................UAAACCAGACUAGGCUUCAGuAUAU................................................. len:25 al:1
.....................UAAACCAGACUAGGCUUCAGCgU................................................... len:23 al:1
.....................cAAACCAGACUAGGCUUCAGC..................................................... len:21 al:6
.....................cAAACCAGACUAGGCUUC........................................................ len:18 al:2
.....................UAAACCAGACUAGGCUUCAGCAc................................................... len:23 al:3
.....................UAAACCAGACUcGGCUUCAGC..................................................... len:21 al:1
.....................UAAACCAGACUAGGCUUCA....................................................... len:19 al:3
.....................UAAACCAGgCUAGGCUUCAGCAUA.................................................. len:24 al:1
.....................UAAACCAGACUAGGCUUCAGCAUuU................................................. len:25 al:1
.....................UAAACCAGACUAGGCUUu........................................................ len:18 al:5
.....................UAAACCAGACUAGGCUUCAGCAUAUU................................................ len:26 al:1
.....................UAAACCAGACUAGGCUUCAGCAUu.................................................. len:24 al:2
.....................UAAACCAGACUAGGCUUCgGCAU................................................... len:23 al:1
.....................UAAACCAGACUAGGCUUCAGCAUAa................................................. len:25 al:1
.....................UAAACCAGACUAGGCUUCAuC..................................................... len:21 al:1
.....................UAAACCAGACUgGGCUUCAGC..................................................... len:21 al:3
.....................UAAACCAGACUAGGCUUCAGCAU................................................... len:23 al:21
.....................UAAACCAGACUAGGCUUCAG...................................................... len:20 al:27
......................AAACCAGACUAGGCUUCAGu..................................................... len:20 al:1
......................AAACCAGACUAGGCUUCAGC..................................................... len:20 al:19
......................AAACCAGACUAGaCUUCAGC..................................................... len:20 al:1
......................AAACCAGACUAGGCUUCAGCAUAUUU............................................... len:26 al:1
......................AAACCAGACUAGGCUUCAGCAU................................................... len:22 al:1
......................uAACCAGACUAGGCUUCAGC..................................................... len:20 al:1
......................AAACCAGACUAGGCUUCAGCAUAUUUAUUUU.......................................... len:31 al:1
......................AAACCAGACUgGGCUUCAGC..................................................... len:20 al:1
.......................AACCAGACUAGGCUUCAGCAUAU................................................. len:23 al:2
.......................AACCAGACUAGGCUUCAGC..................................................... len:19 al:2
........................ACCAGACUAGGCUUCAGC..................................................... len:18 al:3
........................ACCAGACUAGGCUUCAGCAa................................................... len:20 al:1
........................ACCAGACUAGGCUUCAGCA.................................................... len:19 al:1
.........................CCAGACUAGGCUUCAGCu.................................................... len:18 al:2
.........................CCAGACUAGGCUUCAGCAa................................................... len:19 al:2
.........................CCAGACUAGGCUUCAGCA.................................................... len:18 al:1
.............................................UUUAUUUUGUCAAGUCUAGGCUGGUUAGU..................... len:29 al:1
.............................................UUcAUUUUGUCAAGUCUAGGCUGGUUAGUUU................... len:31 al:1
.............................................UUUAUUUUGUCAAGUCUAGGCUGGUUAGUUU................... len:31 al:18
.............................................UUUAUUcUGUCAAGUCUAGGCUGGUUAGUUU................... len:31 al:1
.............................................UUUAUUUUGUCAAGUCUAGGCUGGUUAGUU.................... len:30 al:2
.............................................UUUAUUUUGUCAAGUCUAGGCUGGUUAGUUc................... len:31 al:1
.............................................UUUAUUUUGUCgAGUCUAGGCUGGUUAGUUU................... len:31 al:1
...............................................UAUUUUGcCAAGUCUAGGCUGGUUAGUUU................... len:29 al:1
...............................................UAUUUUGUCAAGUCUAGGCUGGUUAGUUU................... len:29 al:7
...............................................UAUUUUGUCAAGUCUAGGCUGGUUAGU..................... len:27 al:1
................................................AUUUUGUCAAGUCUAGGCUGGUUAGUUU................... len:28 al:2
.................................................UUUUGUCAAGUCUAGGCUGGUUAGUUU................... len:27 al:1
.................................................UUUUGUCAAGUCUAGGCUGGUUAG...................... len:24 al:1
..................................................UUUGUCAAGUCUAGGCUGGUUAGUUU................... len:26 al:2
...................................................UUGUCAAGUCUAGGCcGGUUAGUUU................... len:25 al:1
...................................................UUGUCAAGUCUAGGCUGGUUAGUUU................... len:25 al:4
....................................................UGUCAAGUCUAGGCUGGUUAGcUU................... len:24 al:1
....................................................UGUCAAGUCUAGGCUGGUUAGUU.................... len:23 al:10
....................................................UGUCAAGUCUAGGCUGGUUAGUUc................... len:24 al:3
....................................................UGUCAAGUCUAGGCUGGUUAG...................... len:21 al:2
....................................................UGUCAAGUCUAGGCUGGUUAGU..................... len:22 al:28
....................................................UGUCgAGUCUAGGCUGGUUAGU..................... len:22 al:1
....................................................UGUCAAGUCUAGGCUGGUUAGgU.................... len:23 al:1
....................................................UGUCAAGUCUAGGCUGGUUAGUUU................... len:24 al:51
....................................................UGUCAAGUCUAGGCUGGUUuGU..................... len:22 al:1
....................................................UGUCgAGUCUAGGCUGGUUAGUU.................... len:23 al:1
....................................................UGUCAAGUCUAGGCUGGUUAGUUg................... len:24 al:1
....................................................UGUCAAGUCUgGGCUGGUUAGUUU................... len:24 al:1
....................................................UGUCAAGUCUAGGCUGGUUAGc..................... len:22 al:3
....................................................UGUCAAGUCUAGGCUGGUU........................ len:19 al:3
....................................................UGUCAAGUCUAGGCUGGUUAGUUUU.................. len:25 al:2
.....................................................cUCAAGUCUAGGCUGGUUAGUUU................... len:23 al:19
.....................................................GUCAAGUCUAGGCUGGUUAGc..................... len:21 al:1
.....................................................GUCAAGUCUAGGCUGGUUAGUUc................... len:23 al:1
.....................................................GUCAAGUCUAGGCUGGUUAGUUU................... len:23 al:41
.....................................................GUCAAGUCUAGGCUGGUUAGUU.................... len:22 al:1
.....................................................GUCAAGUCUAGGCUGGUUAGUaU................... len:23 al:1
.....................................................GUCAAGUCUAGGCUGGUUAGUUUU.................. len:24 al:1
......................................................UCAAGUCUAGGCUGGgUAGUU.................... len:21 al:1
......................................................UCcAGUCUAGGCUGGUUAGUU.................... len:21 al:7
......................................................UCAAGUCUAGGCUGGUgAGUUU................... len:22 al:17
......................................................UCAAGUCUAGGCUGGUUgG...................... len:19 al:2
......................................................UCAAGUCUAGGCUGGUUAGUUUUg................. len:24 al:2
......................................................UCAAGUCUAGGCUaGUUAGU..................... len:20 al:10
......................................................UCAAGUCUAGaCUGGUUAGUU.................... len:21 al:11
......................................................UCAAGUCUAGuCUGGUUAGUUU................... len:22 al:27
......................................................UCAAGUCUAGGCUGGUcAGUU.................... len:21 al:20
......................................................UCAAGUCUAcGCUGGUUAGUUU................... len:22 al:4
......................................................UCAAGUCUAGGCUGGUUAGUUUgC................. len:24 al:2
......................................................UCAAGUCUAGGCUGu.......................... len:15 al:1
......................................................UCAAGUCaAGGCUGGUUAGUUU................... len:22 al:40
......................................................UCAAGUCUAGGCUGGUUAGUU.................... len:21 al:17273
......................................................UCAAGUCUAGGCUGGUUAGUUUaCU................ len:25 al:1
......................................................UCAAGUCUAGGCUGGaUAGUUU................... len:22 al:73
......................................................UCAAGUCUAGGaUGGUUAGUU.................... len:21 al:9
......................................................UCAAGUCUAGGCUGGUUAGUc.................... len:21 al:1276
......................................................UCAAGUCUAGGCUcGUUAGUUU................... len:22 al:15
......................................................UCgAGUCUAGGCUGGUUAGUUU................... len:22 al:1353
......................................................UCuAGUCUAGGCUGGUUAGUU.................... len:21 al:11
......................................................UCAAGUCUAuGCUGGUUAGUUU................... len:22 al:80
......................................................cCAAGUCUAGGCUGGUUAGUUU................... len:22 al:2361
......................................................UCAAGUCUAGGCUGGUUAGgUU................... len:22 al:55
......................................................UCAAGUCUAGGCaGGUUAGUU.................... len:21 al:5
......................................................cCAAGUCUAGGCUGGUUAG...................... len:19 al:1
......................................................UCAAGUCUAGGCUGGUUAGUaU................... len:22 al:3665
......................................................aCAAGUCUAGGCUGGUUA....................... len:18 al:1
......................................................UCAAGUCUAGGuUGGUUAGUUU................... len:22 al:276
......................................................UCAAGUCUAGGCUGGUUAu...................... len:19 al:16
......................................................aCAAGUCUAGGCUGGUUAGUU.................... len:21 al:48
......................................................UCAAGUCUAGGCUGGUUAG...................... len:19 al:196
......................................................UCAAGUaUAGGCUGGUUAGUU.................... len:21 al:4
......................................................UCAAGUCcAGGCUGGUUAGUUU................... len:22 al:739
......................................................UCAAGUCUuGGCUGGUUAGUUU................... len:22 al:64
......................................................UCAAGUCUAGGCUGGUcAGUUUU.................. len:23 al:3
......................................................UCAAGUCUAGGuUGGUUAGU..................... len:20 al:3
......................................................UCAAGUCUuGGCUGGUUAGU..................... len:20 al:2
......................................................cCAAGUCUAGGCUGGUU........................ len:17 al:3
......................................................UCAAGUCUAGGCgGGUUAGUU.................... len:21 al:1
......................................................UCAAGUCUAGGCUGGUUAGUUUcC................. len:24 al:1
......................................................UCAAGUCUAGGCUGGUUAaUU.................... len:21 al:5
......................................................UCAAGUuUAGGCUGGUUAGUU.................... len:21 al:6
......................................................UCAAGUCUAGGCUcGUUAGUU.................... len:21 al:3
......................................................UCAAaUCUAGGCUGGUUAGUU.................... len:21 al:5
......................................................UCAAGUCUAGGCUGGUUAGUUa................... len:22 al:2922
......................................................UCAAGUCUAGGCUGGUaAGUUU................... len:22 al:33
......................................................UCAAGUCUAGGCUGGUUAGUUgU.................. len:23 al:32
......................................................UCAAGUCUAGaCUGGUUAGU..................... len:20 al:3
......................................................UCAAGUCUAGaCUGGUUAGUUU................... len:22 al:308
......................................................UCAAGUCUAGGCUGuUUAGUUU................... len:22 al:54
......................................................UCAAGUCUcGGCUGGUUAGU..................... len:20 al:3
......................................................UuAAGUCUAGGCUGGUUAGU..................... len:20 al:6
......................................................UCAAGUCUAGGCUGGgUAGU..................... len:20 al:1
......................................................UCAAGUCUAGGCUGGcUAGUUUU.................. len:23 al:3
......................................................UCAAGUCUAGGgUGGUUAGUU.................... len:21 al:4
......................................................UCAAGUCUAGGCcGGUUAGU..................... len:20 al:9
......................................................UCAAGUCUAGGCUGGUUAGUUU................... len:22 al:393391
......................................................UCAAGUCUAGGCUGGUUAGUUaU.................. len:23 al:36
......................................................UCAAGUCUAGaCUGGUUAGUUUU.................. len:23 al:2
......................................................UCAAGUCUAGGCaGGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUCUAGGCUGGUUAGUUcU.................. len:23 al:7
......................................................UCAAGUCUAGGCUGGUaAGU..................... len:20 al:2
......................................................UCAAGUCUAGGCUGGUUgGUU.................... len:21 al:33
......................................................cCAAGUCUAGGCUGGU......................... len:16 al:2
......................................................UCAAGcCUAGGCUGGUUAGU..................... len:20 al:23
......................................................UCgAGUCUAGGCUGGUUAGUUUU.................. len:23 al:6
......................................................UCAAGUCUgGGCUGGUUA....................... len:18 al:1
......................................................UCAAGUCUAGGCUGGUUAGgU.................... len:21 al:258
......................................................UCcAGUCUAGGCUGGUUAG...................... len:19 al:1
......................................................aCAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:7
......................................................UCAAGUCUAGGCUGGgUAGUUU................... len:22 al:62
......................................................UCuAGUCUAGGCUGGUU........................ len:17 al:1
......................................................UCAgGUCUAGGCUGGUUAGUU.................... len:21 al:68
......................................................UCuAGUCUAGGCUGGUUAGUUU................... len:22 al:191
......................................................UCAAGaCUAGGCUGGUUAGU..................... len:20 al:1
......................................................UCAAGUCUAGGCcGGUUA....................... len:18 al:2
......................................................UCAAGUCUAGGCUGGUUgGU..................... len:20 al:18
......................................................aCAAGUCUAGGCUGGUUAGU..................... len:20 al:8
......................................................UCAAGUCUAGGCUGGUUAGUcU................... len:22 al:862
......................................................UCAAGUCUAGGCUGaUUAGUUUU.................. len:23 al:2
......................................................UCAAGaCUAGGCUGGUUAGUUU................... len:22 al:56
......................................................UCAAGUCUcGGCUGGUUAGUU.................... len:21 al:17
......................................................UCgAGUCUAGGCUGGUUAGUU.................... len:21 al:58
......................................................UCAAGUCUAGGCUGGUUA....................... len:18 al:231
......................................................UCAAuUCUAGGCUGGUUAGUU.................... len:21 al:1
......................................................UCAAGUCUAGaCUGGUUA....................... len:18 al:1
......................................................UCAAGUCUAGGCUaGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUCaAGGCUGGUUAGU..................... len:20 al:1
......................................................UCAAGcCUAGGCUGGUUAGUU.................... len:21 al:51
......................................................UCAAGUaUAGGCUGGUUAGUUU................... len:22 al:89
......................................................UCAAGUCUAGGCUGGUUAcUUU................... len:22 al:5
......................................................UCAAGUCUcGGCUGGUUAGUUU................... len:22 al:316
......................................................UCAAGUCUAGGCUGGUUAGcUUU.................. len:23 al:3
......................................................UCAuGUCUAGGCUGGUUAGUUU................... len:22 al:106
......................................................UCAAGUCUAGuCUGGUUAGUU.................... len:21 al:1
......................................................UCAAGUCUAuGCUGGUUAGUU.................... len:21 al:2
......................................................UCAuGUCUAGGCUGGUUAGU..................... len:20 al:3
......................................................UCAAGUCUAGGCUGGUUAaUUU................... len:22 al:75
......................................................UCAAGUCUAGGCUuGUUAGU..................... len:20 al:4
......................................................UCAAGUCUAGGCUGGUUAGaU.................... len:21 al:54
......................................................UCAAGUCUAGGCUGGUc........................ len:17 al:11
......................................................UCAAGUCUAGGCUGGUUAGU..................... len:20 al:4695
......................................................UCAAGUCUAGGCUGaUUAGUU.................... len:21 al:7
......................................................UCAAGUCUAGGaUGGUU........................ len:17 al:1
......................................................UCAAGUCUAGGCUGGUUc....................... len:18 al:3
......................................................UCAAGUCUAGGCUGGUUAGUUUgCU................ len:25 al:1
......................................................UCAAGUCUgGGCUGGUUAGU..................... len:20 al:10
......................................................UaAAGUCUAGGCUGGUUAGUUU................... len:22 al:15
......................................................UCAAGUCUAGGCUGGUUAuU..................... len:20 al:3
......................................................UCAAGUCUAGGCUGGUUAGUaUU.................. len:23 al:1
......................................................UCAAGUCUAGcCUGGUUAGUUU................... len:22 al:23
......................................................UCAAGUCUAGGCUGGUUAuUUU................... len:22 al:18
......................................................UCAAGUCUAGGCUGGUaA....................... len:18 al:3
......................................................UCAAGUCUuGGCUGGUUAGUU.................... len:21 al:1
......................................................UCAAGUCUgGGCUGGUUAGUUU................... len:22 al:1147
......................................................UCAAGUCUcGGCUGGUUAGUUUU.................. len:23 al:2
......................................................UCAAGUCUAGGCUGGgU........................ len:17 al:4
......................................................UCAAGUCUAGGCUGGUUAGUUUg.................. len:23 al:5
......................................................UCAAGUCUAGGCUGGUUAGc..................... len:20 al:363
......................................................UCcAGUCUAGGCUGGUUAGU..................... len:20 al:3
......................................................UCAAGUCUAGGCUGuUUAGUU.................... len:21 al:4
......................................................UCAAGUCUAGGCUGGUaAGUU.................... len:21 al:2
......................................................UCAAGUCUAGGCUGGUUAcU..................... len:20 al:2
......................................................UCAAGUCUAGGCUGGUUAGa..................... len:20 al:31
......................................................UCAAGUCUgGGCUGGUUAGUU.................... len:21 al:40
......................................................UCgAGUCUAGGCUGGUUAG...................... len:19 al:2
......................................................UuAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:4
......................................................UCAAGUCUAaGCUGGUUAGU..................... len:20 al:5
......................................................UCAAGUuUAGGCUGGUUAGUUU................... len:22 al:100
......................................................UCAgGUCUAGGCUGGUUAGUUU................... len:22 al:1413
......................................................UCcAGUCUAGGCUGGUUAGUUU................... len:22 al:198
......................................................UCAAGcCUAGGCUGGUUAGUUUU.................. len:23 al:13
......................................................UCAAGUCUAGGCUGGgUA....................... len:18 al:1
......................................................UCAAcUCUAGGCUGGUUAGUUU................... len:22 al:2
......................................................UCAAGUCgAGGCUGGUUAGUUU................... len:22 al:16
......................................................UCAAGUCUAGGCUGGUUcGUUU................... len:22 al:140
......................................................UCAAGUCUAGGCUGGUUAGUa.................... len:21 al:190
......................................................UCAAGUCUAGGCUGGaU........................ len:17 al:3
......................................................UCAAGUCUAGGCUGGUUcGUU.................... len:21 al:6
......................................................UCAAGUCUAGGCUGGUUuGUU.................... len:21 al:3
......................................................UCAAGcCUAGGCUGGUUAGUUU................... len:22 al:1226
......................................................UCAAGUCUAGGCUGGUUAGUUUUuU................ len:25 al:3
......................................................UgAAGUCUAGGCUGGUUAGUU.................... len:21 al:1
......................................................UCgAGUCUAGGCUGGUU........................ len:17 al:1
......................................................UCAAGUCUAGGCUGGUcA....................... len:18 al:1
......................................................UCAAGUCUAGGCUuGUUAGUUU................... len:22 al:43
......................................................UCAAGUCUAGGaUGGUUAGU..................... len:20 al:3
......................................................UCAAGUCUAGGCUGGUUAGUUUUgU................ len:25 al:6
......................................................UCAAGUCUgGGCUGGUUAG...................... len:19 al:1
......................................................UCAAGUCUAGGCUGGUUAGcU.................... len:21 al:51
......................................................UCAAaUCUAGGCUGGUUAGUUU................... len:22 al:153
......................................................UCAAGUCUAGGaUGGUUAGUUU................... len:22 al:151
......................................................UCAAGUCUAGGCUGGUUAGUUUa.................. len:23 al:1506
......................................................UCuAGUCUAGGCUGGUUAGU..................... len:20 al:2
......................................................UCAAGUCUAGGCUGGUUAa...................... len:19 al:4
......................................................UuAAGUCUAGGCUGGUUAGUU.................... len:21 al:14
......................................................UCAAGUCUAGGCUGGUUAGUgU................... len:22 al:4800
......................................................cCAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:18
......................................................UCAAGUCUAaGCUGGUUAGUU.................... len:21 al:11
......................................................UCgAGUCUAGGCUGGUUAGU..................... len:20 al:19
......................................................UCAgGUCUAGGCUGGUUA....................... len:18 al:2
......................................................UCAAGUCUAGGgUGGUUAGUUU................... len:22 al:58
......................................................UCAAGUCUAaGCUGGUUAGUUUU.................. len:23 al:4
......................................................UCAAGUCcAGGCUGGUU........................ len:17 al:1
......................................................UCAAGUCUAuGCUGGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUCUAGGCUGGUUgGUUUU.................. len:23 al:4
......................................................UCAAGUCUAGGCUGGUUAGaUU................... len:22 al:20
......................................................UCAAGUCUAaGCUGGUUAGUUU................... len:22 al:209
......................................................UCAAGUCUAGGCUGGUU........................ len:17 al:305
......................................................UCAAGUCUAaGCUGGUUAG...................... len:19 al:2
......................................................UCAAGUCUAGGCUGGUUAGUUc................... len:22 al:22821
......................................................UCAAGUCUAGaCUGGUU........................ len:17 al:2
......................................................UCAAGUCUAGGCUGGUUAaU..................... len:20 al:20
......................................................UuAAGUCUAGGCUGGUUAGUUU................... len:22 al:301
......................................................UCAAGUCUAGGCUGGUUu....................... len:18 al:16
......................................................UCAAGUCUAGGCUGGUUcGU..................... len:20 al:1
......................................................UCAcGUCUAGGCUGGUUAGUUU................... len:22 al:196
......................................................UCAAGUCUAGGCcGGUUAGUUU................... len:22 al:874
......................................................UCAAGUCUAGGCUGGaUAGUU.................... len:21 al:4
......................................................UCAAGUCUAGGCUGGUUAGUUUc.................. len:23 al:87
......................................................UCAAGUCUAGGCcGGUUAGUUUU.................. len:23 al:1
......................................................UCAgGUCUAGGCUGGUUAGUUUU.................. len:23 al:9
......................................................gCAAGUCUAGGCUGGUUAGUUU................... len:22 al:44
......................................................UCAAuUCUAGGCUGGUUAGUUU................... len:22 al:15
......................................................UCAAGUCUAGaCUGGUUAG...................... len:19 al:1
......................................................UCAAGaCUAGGCUGGUUAGUUUU.................. len:23 al:1
......................................................UCcAGUCUAGGCUGGUU........................ len:17 al:1
......................................................UCAAGUCUAGGCaGGUUAGUUU................... len:22 al:146
......................................................cCAAGUCUAGGCUGGUUAGU..................... len:20 al:36
......................................................UCAAGUCUAGGCUGGUUgGUUU................... len:22 al:827
......................................................UCAAGUCUAGGCUGcUUAGUUU................... len:22 al:8
......................................................UCAAGUaUAGGCUGGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUCUAGGCUGGUcAGU..................... len:20 al:4
......................................................UCAAGUCaAGGCUGGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUCUAGGCUGGcU........................ len:17 al:1
......................................................UCAAGUCUAGGCUGGUUAGUUUUaU................ len:25 al:4
......................................................UCAAGUCUAGGCUGGUUAGUUUaC................. len:24 al:21
......................................................UCAAGgCUAGGCUGGUUAGUU.................... len:21 al:1
......................................................UCAAGUCUgGGCUGGUUAGUUUU.................. len:23 al:2
......................................................UCAAGUCUAGGuUGGUUAGUU.................... len:21 al:13
......................................................UCAAGUCUAGGCUGGU......................... len:16 al:36
......................................................UCAAGUCUAGGCUGGUUAGUUg................... len:22 al:767
......................................................UCAAGUCUAGGCUGGcUAGUUU................... len:22 al:956
......................................................UCAAaUCUAGGCUGGUUAGU..................... len:20 al:1
......................................................UCAAGUCUAGGuUGGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUaUAGGCUGGUUAGU..................... len:20 al:2
......................................................UCAAGUCUAGGCUaGUUAGUUU................... len:22 al:376
......................................................UCAAGUCUAGGCgGGUUAGUUU................... len:22 al:57
......................................................UCAAGUCUAGGCaGGUUAGU..................... len:20 al:1
......................................................gCAAGUCUAGGCUGGUUAGUU.................... len:21 al:4
......................................................UCAAGUCaAGGCUGGUUAGUU.................... len:21 al:1
......................................................UCAAGUCUAGGCUGGUUAGg..................... len:20 al:21
......................................................UCAAGUCUAuGCUGGUUAGU..................... len:20 al:3
......................................................UCAAGUCUAGGCUGG.......................... len:15 al:2
......................................................UCAAGUCUAGGCUGGUUuGUUUU.................. len:23 al:1
......................................................aCAAGUCUAGGCUGGUUAGUUU................... len:22 al:1058
......................................................UCAAGUCgAGGCUGGUUAGU..................... len:20 al:1
......................................................UCAAGUgUAGGCUGGUUAGUUU................... len:22 al:2
......................................................UCAcGUCUAGGCUGGUUAGUU.................... len:21 al:6
......................................................UCAAGUCUAGGCUGGUUg....................... len:18 al:1
......................................................UCAAGUCUAGGCUGGUUuGUUU................... len:22 al:40
......................................................UCAAaUCUAGGCUGGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:2145
......................................................UCAAGUCUAGGCUGGUcAGUUU................... len:22 al:544
......................................................UCAAGUCUAGGCcGGUUAGUU.................... len:21 al:35
......................................................cCAAGUCUAGGCUGGUUA....................... len:18 al:2
......................................................UCAcGUCUAGGCUGGUUAGU..................... len:20 al:2
......................................................UCuAGUCUAGGCUGGUUAGUUUU.................. len:23 al:1
......................................................UCAAGUCgAGGCUGGUUAGUU.................... len:21 al:1
......................................................UCAAGUCcAGGCUGGUUAGU..................... len:20 al:9
......................................................UCAgGUCUAGGCUGGUUAGU..................... len:20 al:17
......................................................UCAAGUCUAGGCUGGcUAGUU.................... len:21 al:41
......................................................UCAAGUCUAGGCUGGUUAGUg.................... len:21 al:43
......................................................UCAAGUCUAGGCUGGUUAGUUUUu................. len:24 al:100
......................................................UCAAGUCUAGGCUGaUUAGUUU................... len:22 al:241
......................................................cCAAGUCUAGGCUGGUUAGUU.................... len:21 al:93
......................................................UCAAGUCUAGGCUGGUUuGU..................... len:20 al:96
......................................................UCAAGUCcAGGCUGGUUAGUU.................... len:21 al:24
......................................................UCAAGUCUAGGCUGGcUAGU..................... len:20 al:6
......................................................UCAAGUCUAGGCUGGUUAGcUU................... len:22 al:512
......................................................UCAAGgCUAGGCUGGUUAGUUU................... len:22 al:27
......................................................UCAAGUCcAGGCUGGUUAGUUUU.................. len:23 al:2
......................................................UCAAGUCUAGGCUGGUUAGUUUUa................. len:24 al:63
......................................................UCAAGUCUAGGCUGGUUcGUUUU.................. len:23 al:2
......................................................UCAAGUCUAGGCUaGUUAGUU.................... len:21 al:15
......................................................UCAAGUCUAGGCUGGUUAGUUUUC................. len:24 al:8
......................................................UCAAGUCUAGGCUuGUUAGUU.................... len:21 al:6
......................................................UgAAGUCUAGGCUGGUUAGUUU................... len:22 al:16
......................................................UCcAGUCUAGGCUGGUUAGUUUU.................. len:23 al:3
......................................................UCAuGUCUAGGCUGGUUAGUU.................... len:21 al:7
.......................................................CAAGUCUAGGCUGGUUAG...................... len:18 al:3
.......................................................CAAGUCUAGGCUGGUUAGc..................... len:19 al:1
.......................................................CAAGUCcAGGCUGGUUAGUUU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGU..................... len:19 al:11
.......................................................CAAGUCUcGGCUGGUUAGUUU................... len:21 al:2
.......................................................CAAGUCUgGGCUGGUUAGUUU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGUUUUCUCACUU........... len:29 al:1
.......................................................CAAGUCUAGGCUGGUcAGUUU................... len:21 al:1
.......................................................CgAGUCUAGGCUGGUUAGUUU................... len:21 al:3
.......................................................CAAGUCUAGGCUGGUUAGUUa................... len:21 al:5
.......................................................CAAGUCUAGGCUGGUUAGUUg................... len:21 al:2
.......................................................CAgGUCUAGGCUGGUUAGUUU................... len:21 al:4
.......................................................CAAGUCUAGGCUGGUUAGUU.................... len:20 al:31
.......................................................CAAGUCUAGGCUGGcUAGUUU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGUUUa.................. len:22 al:2
.......................................................CAAGUCUAGGCUGuUUAGUU.................... len:20 al:1
.......................................................CAAGUCUAGGCUGGUUAGUUUU.................. len:22 al:2
.......................................................CAAGUCUAGGCcGGUUAGUUU................... len:21 al:2
.......................................................CAAGUCUAGGCUGGUUAGUUU................... len:21 al:544
.......................................................CAAGUCUAGGCUGGUUAGUaU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGcUU................... len:21 al:1
.......................................................CAAGUCUAGaCUGGUUAGUUU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGUcU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGUc.................... len:20 al:3
.......................................................CAAaUCUAGGCUGGUUAGUUU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGUUc................... len:21 al:23
.......................................................CAAGcCUAGGCUGGUUAGUUU................... len:21 al:2
.......................................................CAAGUCUAGGCUGGUUgGUUU................... len:21 al:4
.......................................................uAAGUCUAGGCUGGUUAGUUU................... len:21 al:1
.......................................................CAAGUCUAGGCUGGUUAGUgU................... len:21 al:9
.......................................................CAAGUCUAGGCUGGUUA....................... len:17 al:1
........................................................AAGUCUAGGCUGGUUAGUUUa.................. len:21 al:1
........................................................AAGUCUgGGCUGGUUAGUUU................... len:20 al:3
........................................................AAGaCUAGGCUGGUUAGUU.................... len:19 al:1
........................................................AAGUCUAGGCUGGUUgGUUU................... len:20 al:1
........................................................AAGUCUAGGCUGGUUAGUgU................... len:20 al:3
........................................................AAGUCUAGGCUGGcUAGUUU................... len:20 al:2
........................................................AAGUCUAGGCUGGUUAGUUa................... len:20 al:2
........................................................AAGUCUAGGCUGGUUAGUUU................... len:20 al:207
........................................................AAGUCUAGGCUGGUUAGUU.................... len:19 al:20
........................................................AAGUCUAGGCUGGUcAGUUU................... len:20 al:1
........................................................AAGUCUAGGCUGGUUAGUc.................... len:19 al:1
........................................................AAGUCUcGGCUGGUUAGUUU................... len:20 al:1
........................................................AAGUCUAGGCUGGUUAGgU.................... len:19 al:2
........................................................AAGUCUAGGCUGGUUAGUUc................... len:20 al:14
.........................................................AGUCgAGGCUGGUUAGUUU................... len:19 al:1
.........................................................AGUCUAGGCUGGUUAGUUc................... len:19 al:3
.........................................................AGUCUcGGCUGGUUAGUUU................... len:19 al:1
.........................................................AGUCUAGGCUGGUUAGUgU................... len:19 al:1
.........................................................AGUCUAaGCUGGUUAGUU.................... len:18 al:1
.........................................................AGUCUAGGCUGGUUAGUUU................... len:19 al:48
.........................................................AGUCUAGaCUGGUUAGUUU................... len:19 al:1
.........................................................AGUCUAGGCUGGUUAGUU.................... len:18 al:16
.........................................................AGUCUAGGCUGGUUgGUUU................... len:19 al:1
.........................................................AGUCgAGGCUGGUUAGUU.................... len:18 al:1
.........................................................AGUCUAGGCUGGUUAGgU.................... len:18 al:1
.........................................................AGUCUAGGCUGGUUAGUUUa.................. len:20 al:1
..........................................................GUCaAGGCUGGUUAGUUU................... len:18 al:1
..........................................................GUCUAGGCUGGUUAGUUc................... len:18 al:2
..........................................................GUCUAGGCUGGUUAGUUU................... len:18 al:25
..........................................................GUCUAGGCUGGUUAGUgU................... len:18 al:1
..........................................................GUCUAGGCUGGUUAGU..................... len:16 al:1
...........................................................UCUAGGCUGGUUAGUUU................... len:17 al:1