Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000000:16198048-16198139 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_321.ps.pdf
Locus Name: Cluster_321
UCGUUUUUAGGCAGGAAAGUCUUAUGAUAUCAUAGCCUUUGAGAUUUAAUUUCAAGGGUUACGAAUCAUUGGAUUAUCAGUCUUAAGACACU
..(((((.((((..((.(((((.(((((.((.(((((((((((((...))))))))))))).))))))).))))).)).)))).)))))... (-32.80)
UCGUUUUUAGGCAGGAAAGUaU...................................................................... len:22 al:1
UCGUUUUUAGGCAGGAAAGUCU...................................................................... len:22 al:16
.CGUUUUUAGGCAGGAAAGUCU...................................................................... len:21 al:17
.CGUUUUUAGGCAGGAAAGUCg...................................................................... len:21 al:1
..GUUUUUAGGCAGGAAAGUCU...................................................................... len:20 al:1
.........GGCAGGAAAGUCUUAUGAUAU.............................................................. len:21 al:1
.....................UUAUGAUAUCAUAGCCUUUGAGg................................................ len:23 al:2
.....................UUAUGAUAUCAUAGCCUUUGAGAU............................................... len:24 al:1
.....................UUAUGAUAUCAUAGCCUUUG................................................... len:20 al:8
.....................UUAUGAUAUCAUAGCCcUUGAGA................................................ len:23 al:1
.....................UUAcGAUAUCAUAGCCUUUGAGA................................................ len:23 al:1
.....................UUAUGgUAUCAUAGCCUUUGAGA................................................ len:23 al:1
.....................UUAUGAUAUCAUAGCCUUUGAG................................................. len:22 al:13
.....................UUAUGAUAUCAUAGCCUcUGAG................................................. len:22 al:1
.....................UUAUGAUAUCAUAGCCUUUGAGA................................................ len:23 al:89
.....................UUAUGAUAUCAUAGCCUUUGAa................................................. len:22 al:1
.....................UUAUGAUAUCAUAGCCUUUGgGA................................................ len:23 al:1
......................UAUGAUAcCAUAGCCUUUGA.................................................. len:20 al:2
......................UAcGAUAUCAUAGCCUUUG................................................... len:19 al:23
......................cAUGAUAUCAUAGCCUUUGAGAU............................................... len:23 al:1
......................UAUGAUAUCAUAGCCUUUGg.................................................. len:20 al:2
......................UcUGAUAUCAUAGCCUUUGAG................................................. len:21 al:3
......................UAUGAUAUCAUAGCCUUUa................................................... len:19 al:91
......................UAUGAUAUCAUAGCCUUcGAGA................................................ len:22 al:62
......................UAUGAUAUCAUAGCCUUU.................................................... len:18 al:1
......................UAUGAUAUCAUAGCCUUUGcG................................................. len:21 al:2
......................UAUuAUAUCAUAGCCUUUGAG................................................. len:21 al:1
......................UAUGAUAUuAUAGCCUUUG................................................... len:19 al:5
......................UAUGAUAUCAUAGCCUUUGAGAU............................................... len:23 al:198
......................cAUGAUAUCAUAGCCUUUGA.................................................. len:20 al:1
......................UAUGAUAUCAUAGCCUUUGAGAa............................................... len:23 al:62
......................UAUGAUAUCAUAGCCUUUGAu................................................. len:21 al:52
......................UgUGAUAUCAUAGCCUUUGAGAUU.............................................. len:24 al:1
......................UAUGAUAUCAUAuCCUUUGAGA................................................ len:22 al:3
......................UAUGAUAUCAUAGCCUUUGgG................................................. len:21 al:36
......................UAUGAUAUCAUAGCaUUUGAG................................................. len:21 al:7
......................UAUGAUAUCuUAGCCUUUG................................................... len:19 al:1
......................UAUGAUAUCAUAGCCUUgGAGA................................................ len:22 al:2
......................UAUGAUAgCAUAGCCUUUGAGA................................................ len:22 al:1
......................UAUGAUAUCAUAGCCcUUGAGAU............................................... len:23 al:2
......................UAUGAUAUCAgAGCCUUUGAGA................................................ len:22 al:3
......................UAUGAUAUCAUAGCCUUUGAGAUUUAuUUU........................................ len:30 al:2
......................UAUGAUAUCAUAaCCUUUGAGA................................................ len:22 al:11
......................UAcGAUAUCAUAGCCUUUGAGA................................................ len:22 al:84
......................UAUGAUAUCAUAGCCUUUGAGAUg.............................................. len:24 al:1
......................UAUGAUgUCAUAGCCUUUGAG................................................. len:21 al:15
......................UAUGAUAUCAUAGCCUUUGAGAUUUAAUUU........................................ len:30 al:1
......................UAUGAUAUCAUAGCuUUUGAGA................................................ len:22 al:12
......................gAUGAUAUCAUAGCCUUUGAGA................................................ len:22 al:4
......................UAUaAUAUCAUAGCCUUUGAG................................................. len:21 al:1
......................UAUGAUAaCAUAGCCUUUGAGA................................................ len:22 al:3
......................gAUGAUAUCAUAGCCUUUGAGAUU.............................................. len:24 al:1
......................UAUGAUAUCAUAGCCUUaG................................................... len:19 al:3
......................UAUGAUAUCAUAaCCUUUG................................................... len:19 al:7
......................UAUGAUAUCAUAGCCUUUuAGA................................................ len:22 al:1
......................UgUGAUAUCAUAGCCUUUGAG................................................. len:21 al:14
......................UAUGAUAUCAUAGCCUUUGgGAU............................................... len:23 al:2
......................UAUGcUAUCAUAGCCUUUG................................................... len:19 al:2
......................UAUGAUAUCAUAGCCcUUGAG................................................. len:21 al:15
......................UAUGAUAUaAUAGCCUUUGAGA................................................ len:22 al:1
......................UAUGAUAUCAUAGCCUUUGAGg................................................ len:22 al:248
......................UAUGAUuUCAUAGCCUUUGAG................................................. len:21 al:1
......................UAUGAUAUCAUAGuCUUUG................................................... len:19 al:3
......................UAUGAUAUCAUcGCCUUUGAGA................................................ len:22 al:15
......................UAcGAUAUCAUAGCCUUUGAG................................................. len:21 al:24
......................UAUaAUAUCAUAGCCUUUG................................................... len:19 al:1
......................UAUGAUuUCAUAGCCUUUGAGA................................................ len:22 al:3
......................UAUGAUAUCAUAGCCaUUGAGA................................................ len:22 al:6
......................UAUGAUAUCAUAGCCUgUGAGA................................................ len:22 al:2
......................UAUGcUAUCAUAGCCUUUGAGA................................................ len:22 al:16
......................UAUGAUAUCAUAGCCUUUGAGAUa.............................................. len:24 al:17
......................UAUGAUAUCAUgGCCUUUGAGA................................................ len:22 al:59
......................UAaGAUAUCAUAGCCUUUG................................................... len:19 al:3
......................UAUGAUAUCAUuGCCUUUGAGA................................................ len:22 al:15
......................UAUGAUAUCAcAGCCUUUGAG................................................. len:21 al:21
......................UAUGAUAUCgUAGCCUUUG................................................... len:19 al:12
......................UAUGuUAUCAUAGCCUUUGAG................................................. len:21 al:2
......................UAUGAUAUCAUAGCCUUUGAGc................................................ len:22 al:62
......................UAUGAUAUCAUAGCCUUUGAGgU............................................... len:23 al:5
......................cAUGAUAUCAUAGCCUUUGAGAUU.............................................. len:24 al:1
......................UAgGAUAUCAUAGCCUUUGAGA................................................ len:22 al:2
......................UAUGAUAUCAUAGCCUUaGAGA................................................ len:22 al:3
......................UAUGAUAUCAUAGCCUUUGu.................................................. len:20 al:21
......................UAUGAUAUCAUAGCCUUUaAGA................................................ len:22 al:1
......................UAUaAUAUCAUAGCCUUUGAGA................................................ len:22 al:13
......................UuUGAUAUCAUAGCCUUUGAG................................................. len:21 al:1
......................UAUGAUAUCAUAGCCUUUGA.................................................. len:20 al:170
......................UAUGAUAUCAUAGCCUUUGAGAUUU............................................. len:25 al:6
......................UAUGAUAUCAUAGuCUUUGAG................................................. len:21 al:4
......................UAUGAUAUCAUAGCCUUcG................................................... len:19 al:8
......................UAUGAUAUCAUAaCCUUUGAG................................................. len:21 al:4
......................UAUGAUAUCgUAGCCUUUGAGAUU.............................................. len:24 al:1
......................UAUGAaAUCAUAGCCUUUGAGA................................................ len:22 al:8
......................UAUGAUAUCAUAGCCUUUGAGAUUUAAUUUC....................................... len:31 al:1
......................UAUGAUgUCAUAGCCUUUG................................................... len:19 al:9
......................UAUGAUAUCAUAGCCUUcGAG................................................. len:21 al:10
......................UAUGAUAcCAUAGCCUUUGAG................................................. len:21 al:23
......................UAUGuUAUCAUAGCCUUUGAGA................................................ len:22 al:6
......................UAUGAUAUCAUAGCCUUUGAGAc............................................... len:23 al:10
......................UAUGAUAUCAUAGCCUUUGAG................................................. len:21 al:6064
......................UAUGAUAUCAUAGCCUUUGAGu................................................ len:22 al:862
......................UAUGcUAUCAUAGCCUUUGAG................................................. len:21 al:4
......................UAUGAUAUCAUAGCCaUUGAG................................................. len:21 al:2
......................cAUGAUAUCAUAGCCUUUG................................................... len:19 al:18
......................UAUGAUAUCAUAGCCUUUGAGAUUgA............................................ len:26 al:1
......................UAUGAUAUCAUAuCCUUUG................................................... len:19 al:1
......................aAUGAUAUCAUAGCCUUUGA.................................................. len:20 al:1
......................UAUGAUAUCuUAGCCUUUGAG................................................. len:21 al:2
......................UcUGAUAUCAUAGCCUUUGAGA................................................ len:22 al:16
......................UAUGAUAUCAUAGCCUUUGAGuU............................................... len:23 al:5
......................UAUGAUAUCAUAGCCUUUGAGAUaU............................................. len:25 al:3
......................UAUGgUAUCAUAGCCUUUGA.................................................. len:20 al:1
......................UAUGAUAUCAUAGCaUUUGAGA................................................ len:22 al:11
......................UAUGAUAUCAUAGCCUUUGAGAaU.............................................. len:24 al:8
......................UAUGAUAUCAUAGuCUUUGAGA................................................ len:22 al:16
......................UAUGAUAUCAUcGCCUUUGAG................................................. len:21 al:6
......................UAUGAUAUCAUAGCCUcUG................................................... len:19 al:4
......................UAUGAUAUCAUAGCCUUUGAGAUgU............................................. len:25 al:2
......................UAUGAcAUCAUAGCCUUUGAGA................................................ len:22 al:71
......................UAUGAUAUCAUAGCCUUUGAGA................................................ len:22 al:28794
......................UAUGAUAUCAUAuCCUUUGAG................................................. len:21 al:1
......................UAUGAcAUCAUAGCCUUUG................................................... len:19 al:12
......................UAUGAUAUCAUAGCCUUUc................................................... len:19 al:1
......................UAUGAUAUCAUAGCCUUUaAG................................................. len:21 al:1
......................cAUGAUAUCAUAGCCUUUGAG................................................. len:21 al:21
......................UAUGAUAUCAUgGCCUUUG................................................... len:19 al:9
......................UuUGAUAUCAUAGCCUUUGAGA................................................ len:22 al:8
......................UAUGAUcUCAUAGCCUUUG................................................... len:19 al:6
......................UAUGAUAUCAUAGCCUUUGAGAUU.............................................. len:24 al:119
......................UAUGAcAUCAUAGCCUUUGAG................................................. len:21 al:9
......................UAUGAUAUCAUAGCCUUUGuG................................................. len:21 al:2
......................UAUGAUAUCAcAGCCUUUGAGA................................................ len:22 al:59
......................aAUGAUAUCAUAGCCUUUGAGAUU.............................................. len:24 al:1
......................UAUGAUAUCgUAGCCUUUGAG................................................. len:21 al:20
......................UAUuAUAUCAUAGCCUUUGAGA................................................ len:22 al:2
......................UAUGAUAUuAUAGCCUUUGAG................................................. len:21 al:4
......................aAUGAUAUCAUAGCCUUUGAGA................................................ len:22 al:158
......................UAUGAUAUCAUAGCCUUUG................................................... len:19 al:5209
......................UAUGAUAUCAUAGgCUUUGAGA................................................ len:22 al:1
......................UAUGgUAUCAUAGCCUUU.................................................... len:18 al:2
......................UAUGAUAUCAUAGCCUcUGAG................................................. len:21 al:17
......................UAUGAUAcCAUAGCCUUUGAGA................................................ len:22 al:96
......................UAgGAUAUCAUAGCCUUUGAG................................................. len:21 al:1
......................UAUGAUAUCAUAGCCUUUGAcA................................................ len:22 al:3
......................UAUGAUAUCAUAGCCUUUGcGA................................................ len:22 al:6
......................UAUGAUAUCcUAGCCUUUG................................................... len:19 al:7
......................UAUGAUgUCAUAGCCUUUGA.................................................. len:20 al:1
......................UAUGAUAUuAUAGCCUUUGAGA................................................ len:22 al:30
......................UAUGAUAUCAUAGCCUUgGAG................................................. len:21 al:1
......................UAUGAUAUCAUAGCCUUg.................................................... len:18 al:1
......................UAUGuUAUCAUAGCCUUUG................................................... len:19 al:1
......................UAUGAUAUCAUAGCCcUUGAGA................................................ len:22 al:121
......................UAUGAUAUCAUAGCCUUgG................................................... len:19 al:1
......................UAUGAUAUCAUAGCCUUUGAa................................................. len:21 al:244
......................UAUGAUAUCAUcGCCUUUG................................................... len:19 al:3
......................UAUGAUAUCcUAGCCUUUGAG................................................. len:21 al:7
......................UAUGAUcUCAUAGCCUUUGAG................................................. len:21 al:4
......................UAUGgUAUCAUAGCCUUUGAG................................................. len:21 al:22
......................UAUGAgAUCAUAGCCUUUGAG................................................. len:21 al:2
......................UAUGAUAUCAUgGCCUUUGAG................................................. len:21 al:13
......................UgUGAUAUCAUAGCCUUUG................................................... len:19 al:14
......................UAUGAUAUCAUAGCCaUUG................................................... len:19 al:1
......................UAUGgUAUCAUAGCCUUUG................................................... len:19 al:21
......................UAUGAUAUCgUAGCCUUUGAGAU............................................... len:23 al:1
......................UAUGAUgUCAUAGCCUUUGAGA................................................ len:22 al:57
......................UAUGAUAUCAcAGCCUUUG................................................... len:19 al:15
......................UAUGAUAUCAUAGCuUUUG................................................... len:19 al:1
......................UAUGgUAUCAUAGCCUUUGAGAUU.............................................. len:24 al:2
......................cAUGAUAUCAUAGCCUUUGAGA................................................ len:22 al:106
......................aAUGAUAUCAUAGCCUUUG................................................... len:19 al:22
......................UgUGAUAUCAUAGCCUUUGAGA................................................ len:22 al:72
......................UAaGAUAUCAUAGCCUUUGAGA................................................ len:22 al:4
......................UAUGAUAcCAUAGCCUUUG................................................... len:19 al:15
......................UcUGAUAUCAUAGCCUUUG................................................... len:19 al:1
......................aAUGAUAUCAUAGCCUUUGAG................................................. len:21 al:23
......................UAUGAUAUCAUAGCCUUUGAaA................................................ len:22 al:10
......................UAUGAUAUCAUAGCCgUUGAGA................................................ len:22 al:2
......................UAUGAUAUCgUAGCCUUUGAGA................................................ len:22 al:92
......................UAUGAUAUCAUAGCCUUUGuGA................................................ len:22 al:14
......................UAUGAUAUCAaAGCCUUUGAGA................................................ len:22 al:2
......................UAUGAUAUCAUAGCCUUUGAGAg............................................... len:23 al:1
......................UAUGAUAUCAUAGCCUUUGgGA................................................ len:22 al:155
......................UAUGAUcUCAUAGCCUUUGAGA................................................ len:22 al:25
......................UAUGgUAUCAUAGCCUUUGAGA................................................ len:22 al:127
......................UAUGAUAUCAUAGCCUUUGAGAUUUAAU.......................................... len:28 al:2
......................UAUGAUAUCAUAGCCUUUGAc................................................. len:21 al:20
......................UAUGAUAUCAUAGCCUUc.................................................... len:18 al:1
......................UAUGAUAUCAUAGCCUUUGAGAUUUAuU.......................................... len:28 al:1
......................UAUGAUAUCAUAGCCUcUGAGA................................................ len:22 al:73
......................UgUGAUAUCAUAGCCUUUGAGAU............................................... len:23 al:1
......................UAUGAUAUCAUAGCCUUUu................................................... len:19 al:1
......................UAUGAUAUCcUAGCCUUUGAGA................................................ len:22 al:29
......................UAUGAUAUCAUAGCCUaUGAGA................................................ len:22 al:2
......................UAaGAUAUCAUAGCCUUUGAG................................................. len:21 al:3
......................UAUGAUAUCAUAGCCcUUG................................................... len:19 al:15
......................UAUGAUAUCAUAGCaUUUG................................................... len:19 al:2
......................UAUGAUAUCAUAGCCUUUGAGAUUUAAUU......................................... len:29 al:1
.......................AUGAUAUCAUAGCCUUUGAa................................................. len:20 al:1
.......................AUGAUAUCAUAGCCUUUGAGAa............................................... len:22 al:1
.......................AUGAUAUCAUAGCCUUUG................................................... len:18 al:4
.......................AUGAUAUCAUAGCCUUUGAG................................................. len:20 al:7
.......................AUGAUAUCAUAGCCUUUGAGg................................................ len:21 al:2
.......................AUGAUAUCAUAGCCUUUGAGA................................................ len:21 al:30
.......................AcGAUAUCAUAGCCUUUGAGA................................................ len:21 al:1
.......................AUGAUAUCAUAGCCUUUGA.................................................. len:19 al:2
........................UGAUAUCAUAGCCUUUGAG................................................. len:19 al:5
........................UGAUAUCAUAGCCUUUGA.................................................. len:18 al:1
........................UGAUAUCAUAGCCUUUGgGA................................................ len:20 al:1
........................UGAUAUCAUAGCCUUUGAGA................................................ len:20 al:20
........................UGAUAUCAUAGCCaUUGAGA................................................ len:20 al:2
.........................aAUAUCAUAGCCUUUGAG................................................. len:18 al:1
.........................GAUAUCAUAGCCUUUGAGAUU.............................................. len:21 al:1
.........................GAUAUCAUAGCCUUUGAG................................................. len:18 al:3
.........................GAUAUCAUAGCCUUUGAGAUUUAuUUUCAA..................................... len:30 al:1
.........................GAUAUCAUAGCCUUUGAGA................................................ len:19 al:2
..............................CAUAGCCUUUGAGAUUUAuUUUCAA..................................... len:25 al:1
..............................CAUAGCCUUUGAGAUUUAAUU......................................... len:21 al:1
.......................................UGAGAUUUAuUUUCAAGGGUUA............................... len:22 al:1
.......................................UGAGAUUUAAUUUCAAGGGUUACGAAUCA........................ len:29 al:1
.......................................UGAGAUUUAAUUUCAAGGGUUACGAAc.......................... len:27 al:1
.......................................UGAGAUUUAAUUUCAAGGGUUACGAAg.......................... len:27 al:1
.........................................AGAUUUAuUUUCAAGGGUUACGAAU.......................... len:25 al:1
..........................................GAUUUAuUUUCAAGGGUUACGAAUCAUUGG.................... len:30 al:2
..........................................GAUUUAAUUUCAAGGGUUACGAAUCAUUGG.................... len:30 al:1
..........................................GAUUUAAUUUCAAGGGUUACGAAU.......................... len:24 al:7
..........................................GAUUUAAUUUCAAGGGUUACGAgU.......................... len:24 al:1
..........................................GAUUUAuUUUCAAGGGUUACGAAU.......................... len:24 al:61
...........................................AUUUAuUUUCAAGGGUUACGAAUC......................... len:24 al:1
............................................UUUAAUUUCAAGGGUUACGAAUCAUUGG.................... len:28 al:1
..............................................UAuUUUCAAGGGUUACGAAUCAUUGG.................... len:26 al:1
...............................................AuUUUCAAGGGUUACGAAUC......................... len:20 al:1
.................................................UUUCAAGGGUUACGAAUCA........................ len:19 al:1
..................................................UUCAAGGGUUACGAAUCA........................ len:18 al:1
..................................................UUCAAGGGUUACGAAUCAU....................... len:19 al:1
...................................................UCAAGGGUUACGAAUCAUUGGAUU................. len:24 al:1
...................................................UCAAGGGUUACGAAUC......................... len:16 al:4
...................................................UCAAGGGUUACGAAUCAUUGGAUUuU............... len:26 al:1
...................................................UCAAGGGUUACGAAUCAUUa..................... len:20 al:1
...................................................UCgAGGGUUACGAAUCAU....................... len:18 al:1
...................................................UCAAGGGUUACGAAUCAUUGGc................... len:22 al:3
...................................................UCAAGGGUUACGAAUCAUUGGu................... len:22 al:8
...................................................UCAAGGGUUACGAAUCAUU...................... len:19 al:110
...................................................UCAAGGGUUACGAAUCAUUG..................... len:20 al:10
...................................................UCAAGGGUUACGAAUCA........................ len:17 al:4
...................................................UCAAGGGUUACGAAUCAUUGGAaU................. len:24 al:5
...................................................UCAAGGGUUACGAAUCAU....................... len:18 al:20
...................................................UCAAGGGUUACGAAUCAUUGGAU.................. len:23 al:17
...................................................UCAAGGGUUACGAAUCAc....................... len:18 al:2
...................................................UCAAGGGUUACGAAUCAUUu..................... len:20 al:18
...................................................UCAAGGGUUACGAAUCAUUGG.................... len:21 al:9
...................................................UCAAGGGUcACGAAUCAUU...................... len:19 al:1
...................................................UCAAGGGUUACGAAUCAUUGGAa.................. len:23 al:2
...................................................UCAAGGGUUACGAAUCAUUGGAUUA................ len:25 al:1
...................................................UCAAGGGUUgCGAAUCAUU...................... len:19 al:4
...................................................UCAAGGGUUACGAAUCAUUGGA................... len:22 al:48
...................................................UCAAGGGUUACGAAUCAUg...................... len:19 al:1
...................................................UCAAGGGUUACGAAcCAUU...................... len:19 al:1
...................................................cCAAGGGUUACGAAUCAUU...................... len:19 al:1
...................................................UCAAGGGUUACGAAUCAa....................... len:18 al:1
...................................................UCAAGGGUUACGAAUCAUc...................... len:19 al:4
...................................................UCAAGGGUUACGAcUCAUU...................... len:19 al:1
....................................................CAAGGGUUACGAAUCAUUGGAU.................. len:22 al:1
....................................................CAgGGGUUACGAAUCAUUGG.................... len:20 al:1
....................................................CAAGGGUUACGAAUCAUUGGAUUAU............... len:25 al:1
....................................................CAAGGGUUACGAAUCAUU...................... len:18 al:2
....................................................CAAGGGUUACGAAUCAUUGGAUUAc............... len:25 al:1
.....................................................AAGGGUUACGAAUCAUUG..................... len:18 al:1
.....................................................AAGGGUUACGAAUCAUUGGA................... len:20 al:1
.....................................................AAGGGUUACGAAUCAUU...................... len:17 al:1
.....................................................AAGGGUUACGAAUCAUUGG.................... len:19 al:2
............................................................ACGAAUCAUUGGAUUAUCAGUCUUAAGA.... len:28 al:1
..................................................................CAUUGGAUUAUCAGUCUUAAGACA.. len:24 al:1
....................................................................UUGGAUUAUCAGUCUUAAGACACU len:24 al:1