Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000009:3894900-3894992 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_3017.ps.pdf
Locus Name: Cluster_3017
ACAAAGCCGGUUUGACCGAAUAGCAUAACAUUGUAAGAGAUCUUUAAGAGCUCUUGCAUUGUUGUGCUGUUCGGGAAAGCUUAAUCAACAGCG
........(((((..(((((((((((((((.((((((((.(((...))).)))))))).)))))))))))))))..)))))............ (-43.00)
....................UAGCAUAACAUUGUAAGAGAUCc.................................................. len:23 al:5
....................UAGCAUAACAUUGUAAGAGAUCU.................................................. len:23 al:78
....................UAGCAUAACAUUGUAAGAGAUa................................................... len:22 al:7
....................UAGCAUAgCAUUGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAgGAGAUCU.................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAcC................................................... len:22 al:3
....................UAGCAUAACAUUGUAAGAGAUu................................................... len:22 al:19
....................UAGCAUAAaAUUGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUAAGA............................................ len:29 al:1
....................UAGCAUAACAUUGUAAGAGAU.................................................... len:21 al:8
....................UAGCAUAACAUUGUAAGAGAc.................................................... len:21 al:1
....................UgGCAUAACAUUGUAAG........................................................ len:17 al:3
....................UAGCAUAACAUaGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAa........................................................ len:17 al:2
....................UAGCAUAAuAUUGUAAG........................................................ len:17 al:1
....................UAGuAUAACAUUGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCa.................................................. len:23 al:47
....................UAGCAUAACAUUGUAAGgGAUC................................................... len:22 al:2
....................UAGCAUAACAUUGUAAGAG...................................................... len:19 al:1
....................UAGCAUAACAUUGUAAGAGA..................................................... len:20 al:3
....................UuGCAUAACAUUGUAAG........................................................ len:17 al:2
....................UAGCAUAACAUgGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAG........................................................ len:17 al:937
....................UAGCAUAACAUUGcAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGAGgUC................................................... len:22 al:2
....................UcGCAUAACAUUGUAAG........................................................ len:17 al:1
....................cAGCAUAACAUUGUAAG........................................................ len:17 al:7
....................UAGCAUAACgUUGUAAGAGAUCU.................................................. len:23 al:1
....................UAGCAUAACAUUaUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGA....................................................... len:18 al:7
....................UAGCAUAACAUUGUAgG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUC................................................... len:22 al:2
....................UAGCAUAACAUUGUAAGAGAUCUUUAAGAGC.......................................... len:31 al:5
....................UAGCAUAACAUcGUAAG........................................................ len:17 al:3
....................UAGCAUAACgUUGUAAG........................................................ len:17 al:5
........................AUAACAUUGUAAGAGAUCa.................................................. len:19 al:1
.........................UAACAUUGUAAGAGAUCUUUAAGAGCU......................................... len:27 al:2
.............................AUUGUAAGAGAUCUUUAuGAGCU......................................... len:23 al:1
...............................UGUAAGAGAUCUUUAuGAGCU......................................... len:21 al:1
................................GUAAGAGAcCUUUAAGAGCU......................................... len:20 al:1
.....................................AGAUCUUUAuGAGCUCUUGCAUU................................. len:23 al:1
.......................................AUCUUUAuGAGCUCUUGC.................................... len:18 al:3
........................................UCUUUAAGAGCUCUUGCAUgGUUGUGCUGUU...................... len:31 al:4
........................................UCUUUAuGAGCUCUUGCAUUGUUGUGCUGUU...................... len:31 al:5
........................................UCUUUAuGAGCUCUUGCAUUGUU.............................. len:23 al:1
........................................UCUUUAAGAGCUCUUGCAUgGUU.............................. len:23 al:1
........................................UCUUUAAGAGCUCUUGCAUgGUUGUGC.......................... len:27 al:1
........................................UCUUUAAGAGCUCUUGCAUgGUUGUGCUGU....................... len:30 al:1
.........................................CUUUAuGAGCUCUUGC.................................... len:16 al:1
.........................................CUUUAuGAGCUCUUGCAUUGUUGUGCUGUU...................... len:30 al:11
.........................................CUUUAAGAGCUCUUGCAUgGUUGUGCUGUU...................... len:30 al:1
..........................................UUUAAGAGCUCUUGCAUgGUUGUGCUGUU...................... len:29 al:4
..........................................UUUAuGAGCUCUUGCAUUGUUGUGCUGUU...................... len:29 al:35
...........................................UUAuGAGCUCUUGCAUUGUUGUGCUGUU...................... len:28 al:1
............................................UAAGAGCUCUUGCAUgGUUGUGCUGUU...................... len:27 al:1
...............................................GAGCUCUUGCAUUGUUGUGCUGUU...................... len:24 al:1
...............................................GAaCUCUUGCAUUGUUGUGCUGUU...................... len:24 al:1
.................................................GCUCUcGCAUUGUUGUGCUGUU...................... len:22 al:4
.................................................GCUCUUGCAUaGUUGUGCUGUU...................... len:22 al:1
.................................................GCUCUUGCAUUGUUGUGCUGU....................... len:21 al:10
.................................................GCUCUUGCAUUGUUGUGCUG........................ len:20 al:1
.................................................GCUCUUGCAUUGUUGUGCUGUUa..................... len:23 al:1
.................................................GCUCaUGCAUUGUUGUGCUGUU...................... len:22 al:1
.................................................GCUCUUGCAUcGUUGUGCUGUU...................... len:22 al:3
.................................................GCUCUUGCAUUGUUGUGCUGUUu..................... len:23 al:5
.................................................GCUCUUGCAUUGUUGUGCUGgU...................... len:22 al:11
.................................................GCUCUUGCAUUGUUGcGCUGUU...................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUGCcGUU...................... len:22 al:3
.................................................GCUCUUGCAUgGUUGUGCUGUU...................... len:22 al:92
.................................................GCUCUUGCAUUGUUGUGCUGcU...................... len:22 al:4
.................................................GCUCUUGCAUUGUUGUGCUGaU...................... len:22 al:4
.................................................GCUCUUGCAUUGUUGUGCUGUU...................... len:22 al:859
.................................................GCUCUaGCAUUGUUGUGCUGUU...................... len:22 al:2
.................................................GCUCUUGuAUUGUUGUGCUGUU...................... len:22 al:1
.................................................GCUCUUGCAUUGUcGUGCUGUU...................... len:22 al:2
.................................................aCUCUUGCAUUGUUGUGCUGUU...................... len:22 al:4
.................................................GCUCUUGCAUUGUUuUGCUGUU...................... len:22 al:19
.................................................GCUCUUGCAUUGUUGUGCUGUa...................... len:22 al:4
.................................................GCUCUUGCgUUGUUGUGCUGUU...................... len:22 al:8
.................................................cCUCUUGCAUUGUUGUGCUGUU...................... len:22 al:1
.................................................GCUCcUGCAUUGUUGUGCUGUU...................... len:22 al:3
.................................................GCUCUUGCAUUGcUGUGCUGUU...................... len:22 al:2
.................................................GCUCUUGCAUUGUaGUGCUGUU...................... len:22 al:1
.................................................GCUCUUGCAUUGUUGUGCUGc....................... len:21 al:1
.................................................GCUCUUGCAUUGUUGUGCaGUU...................... len:22 al:4
.................................................GCUCUUGCAcUGUUGUGCUGUU...................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUGCUGUc...................... len:22 al:64
.................................................GCUCUUGCAUUGUUGUGCUGUg...................... len:22 al:7
.................................................GCUCUUGCAUUGUUGUaCUGUU...................... len:22 al:3
.................................................GCUCUUGCAUUGUUGUGCU......................... len:19 al:1
....................................................CUUGCAUgGUUGUGCUGUU...................... len:19 al:1