Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:3619341-3619435 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2873.ps.pdf
Locus Name: Cluster_2873
GGGGUAUCUUAAUACACACACAUUUUUAAACUGAAACACUGCAAUUGUUGUUGUGCUUUGGUUCAAAAAUGUCUGUAUAUCAAGAAAAGUCAUUA
((....((((.(((.(((.((((((((.(((((((.(((.((((...)))).))).))))))).)))))))).))).))).))))....)).... (-22.70)
...................ACAUUUUUAAACUGAAACACUGCA.................................................... len:24 al:4
...................ACAUUUUUAAACUGAAACACUGC..................................................... len:23 al:1
....................CAUUcUUAAACUGAAACACUGCA.................................................... len:23 al:1
....................CAUUUUUAAACUGAAACACUGCAAUU................................................. len:26 al:14
....................CAUUUUUAAgCUGAAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAACACUGCAAU.................................................. len:25 al:2
....................CAUUUUUAAACUGAAuCACUGCA.................................................... len:23 al:2
....................CAaUUUUAAACUGAAACACUGC..................................................... len:22 al:2
....................CAUUUUUAgACUGAAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAACACUGCAAUUGUUGU............................................ len:31 al:12
....................CAUUUUUgAACUGAAACACUGCA.................................................... len:23 al:5
....................CgUUUUUAAACUGAAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAACACUGCu.................................................... len:23 al:4
....................CAUUUUUAAACUGAAACACUGCg.................................................... len:23 al:3
....................CAUUUUUAAACUGAAACACUGa..................................................... len:22 al:6
....................CuUUUUUAAACUGAAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAgCACUGCA.................................................... len:23 al:2
....................CAUUUUUAAACcGAAACACUGCA.................................................... len:23 al:1
....................CAUUUcUAAACUGAAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAACACUGCA.................................................... len:23 al:234
....................CAUUUUUAAACUGAAACgCUGCA.................................................... len:23 al:1
....................CAUcUUUAAACUGAAACACUGCA.................................................... len:23 al:1
....................CAUUUUUAAACUGAAACACUGCAAUUGU............................................... len:28 al:1
....................aAUUUUUAAACUGAAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAACACUGCAAUc................................................. len:26 al:4
....................CAUUUUUAAACUGAAACACUGu..................................................... len:22 al:32
....................CAUUUUUAAACUGAAACACUaC..................................................... len:22 al:3
....................CAUUUUUAAACUGAAACACUGg..................................................... len:22 al:1
....................CgUUUUUAAACUGAAACACUGCA.................................................... len:23 al:1
....................CAUUUUUAAACUGAAACACUGCAAcUGUUGU............................................ len:31 al:1
....................CAUUUUUAAACUGcAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAACACUGC..................................................... len:22 al:265
.....................AUUUUUAAACUGAAACACUGC..................................................... len:21 al:1
.....................AUUUUUAAACUGAAACACUGCA.................................................... len:22 al:5
.....................AUUUUUgAACUGAAACACUGCA.................................................... len:22 al:1
......................UUUUUAAACUGAAACACUGCA.................................................... len:21 al:1
......................UUUUUAAuCUGAAACACUGCA.................................................... len:21 al:1
......................UUUUUgAACUGAAACACUGC..................................................... len:20 al:1
......................UUUUUAAACUGAAACACUGu..................................................... len:20 al:4
......................UUUUUAAACUGAAACACUGCAAUU................................................. len:24 al:1
......................UUUUUAAACUGAAACACUGC..................................................... len:20 al:16
.......................UUUUAAACUGAAACACUGCAuU.................................................. len:22 al:1
.......................UUUUAAACUGAAACACUGCA.................................................... len:20 al:5
.........................UUAAACUGAAACACUGCAAUU................................................. len:21 al:2
.........................UUAAACUGAAACACUGCAAUUGUUGUUG.......................................... len:28 al:1
...........................AAACUGAAACACUGCAAU.................................................. len:18 al:1
............................AACUGAAACACUGCAAUUGUUGUUGU......................................... len:26 al:3
............................AACUGAAACACUGCAAUU................................................. len:18 al:1
............................AACUGAAACACUGCAAUUGUUGUUGUGCU...................................... len:29 al:1
........................................GCAAUUGUUGUUGUGCUUUGGUUCAAAAA.......................... len:29 al:2
..........................................AAUUGUUGUUGUGCUUUGGUUCAAAAAUGUC...................... len:31 al:3
...........................................AUUGUUGUUGUGCUUUGGUUCAAAAA.......................... len:26 al:1
.............................................UGUUGUUGUGCUUUGGUUCAAAAAUG........................ len:26 al:3
..................................................UUGUGCUUUGGUUCAAAAAUGUCc..................... len:24 al:1
..................................................UUGUGCUUUGGUUCAAAAAUGUCU..................... len:24 al:6
..................................................UUGUGCUUUGGUUCAAAAAU......................... len:20 al:1
..................................................UUGUGCUUUGGUUCAAAAA.......................... len:19 al:3
..................................................UUGUGCUUUGGUUCAAAA........................... len:18 al:6
..................................................UUGUGCUUUGGUUCAAAAAUGU....................... len:22 al:3
..................................................UUGUGCUUUGGUUCAAAAAUGUCa..................... len:24 al:3
..................................................UUGUGCUUUGGUUCAA............................. len:16 al:2
..................................................UUGUGCUUUGGUUCAAAAAUGUC...................... len:23 al:16
...................................................UGUGCUUUGGUUCAAAAAUGUCc..................... len:23 al:3
...................................................UGUGCUUUGGUUCAcAAA.......................... len:18 al:1
...................................................UGUGCUUUGGUUCAAAgAUGU....................... len:21 al:1
...................................................UGUGCUUUGGUUCAAgAAUGUCU..................... len:23 al:2
...................................................UGUGCUUUGGUUCAAAAAcGUC...................... len:22 al:3
...................................................UGUGCUUUGaUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAU......................... len:19 al:5
...................................................UGUGCUUUGGUUCAAAAAUGUCUGUcUAU............... len:29 al:1
...................................................UGUGCUUcGGUUCAAAAAUGU....................... len:21 al:1
...................................................UGUGCUUUGGUUCAAAAAUGcC...................... len:22 al:3
...................................................UGUGCUUUGGUUCAAAAAUGc....................... len:21 al:9
...................................................UGUGCUUUGGUUCAAAAAUGUCa..................... len:23 al:6
...................................................UGUGCUUcGGUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAA........................... len:17 al:9
...................................................UGUGCUUUGGUUCAAAAA.......................... len:18 al:92
...................................................UaUGCUUUGGUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAa......................... len:19 al:7
...................................................UGUGCUUUGGUUCAAAAAUGUCU..................... len:23 al:64
...................................................UGUGCUUUGGUUCAA............................. len:15 al:15
...................................................cGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:5
...................................................UGUGCUUUGGUUCAAAAAUGUaU..................... len:23 al:1
...................................................UGUGCUUUGGUUCAAAAu.......................... len:18 al:1
...................................................UGUGCUUUGGUUCAAAAg.......................... len:18 al:2
...................................................UGUGCUUUGGUUCAAAgA.......................... len:18 al:1
...................................................UGUGCcUUGGUUCAAAAAUGUC...................... len:22 al:4
...................................................UGUGCUUUGGUUCAAAAAUGU....................... len:21 al:100
...................................................UGUGCUUUGGUUCAAAgAUGUC...................... len:22 al:2
...................................................UGUGCUUUGGUgCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAUG........................ len:20 al:8
...................................................UGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:523
...................................................UGUGCUUUGGUUCAAAAAUGUCUu.................... len:24 al:3
...................................................UGUGCUUUGGUUCAAAAAUGUCUGU................... len:25 al:1
...................................................UGUGCUUUGGcUCAAAAAUGUC...................... len:22 al:3
...................................................UGUGCUUUGGUUCAAAAAUGUu...................... len:22 al:9
...................................................UGUGCUUUGGUUCAAAAAUGUCg..................... len:23 al:1
...................................................UGUGCUUUGGUUCAAAAAUGaC...................... len:22 al:2
...................................................UGcGCUUUGGUUCAAAAAUGU....................... len:21 al:1
...................................................UGUGCUUUGGUUCAgAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAcAAAUGUC...................... len:22 al:2
...................................................UGUGCUUUGGUcCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUa...................... len:22 al:6
...................................................UGUGCUUUGGUUCAAA............................ len:16 al:1
........................................................UUUGGUUCAAAAAUGUCUGUAUAUC.............. len:25 al:2
........................................................UUUGGUUCAAAAAUGUCU..................... len:18 al:1
........................................................UUUGGUUCAAAAAUGUCUGUA.................. len:21 al:2