Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:3576420-3576514 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_2871.ps.pdf
Locus Name: Cluster_2871
AUUCCGUCAGGGUUUUUGUCAUCGAUGGAACACACAAGUAGAGAUUAUAUACUUUACUUGUUGUAUUCUAUUAUAACAGAGACCUAAUUCGUUGA
....((...((((((((((.((.(((((((.((((((((((((........))))))))).))).))))))))).))))))))))....)).... (-30.50)
.UUCCGUCAGGGUUUUUGUCAU......................................................................... len:21 al:1
..UCCGUCAGGGUUUUUGUCAUC........................................................................ len:21 al:2
..UCCGUCAGGGUUUUUGUCAU......................................................................... len:20 al:2
...CCGUCAGGGUUUUUGUCgU......................................................................... len:19 al:1
...CCGUCAGGGUUUUUGUCAU......................................................................... len:19 al:6
...CCGUCAGGGUUUUUGUCAc......................................................................... len:19 al:2
.....GUCAGGGUUUUUGUCAUCGAcGGAACA............................................................... len:27 al:1
.....................cCGAUGGAACACACAAGUAGAGA................................................... len:23 al:1
......................CGAUGGAACACACAAGUAGAGAUU................................................. len:24 al:18
......................CGAUGGAACACACAAGUAGAGg................................................... len:22 al:4
......................CGAUGGAACACACAAGUAGAGAUUAUAUAC........................................... len:30 al:4
......................CGAUGGAACACACAgGUAGAGA................................................... len:22 al:6
......................CGAUGGAACACACAgGUAGAGAU.................................................. len:23 al:2
......................CGAUGGAACACgCAAGUAGAGA................................................... len:22 al:7
......................CGAUGGAAuACACAAGUAGAGA................................................... len:22 al:2
......................CGAUGGAACACACgAGUAGAG.................................................... len:21 al:1
......................CGAUGGAACACACAAGUAGAGAUUAUAUu............................................ len:29 al:4
......................CGAUGGAACACACAAGUAGAGu................................................... len:22 al:13
......................CGAUGaAACACACAAGUAGAGA................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGAGAaUA................................................ len:25 al:2
......................CGAUGGgACACACAAGUAGAGA................................................... len:22 al:3
......................CGAUGGAACACACAAGUA....................................................... len:18 al:1
......................CGAUGGAACACACAAGUAGuGA................................................... len:22 al:1
......................CGAUGGAACcCACAAGUAGAGA................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGgGA................................................... len:22 al:2
......................CGAUGGAACACACAAGUAGAGAUa................................................. len:24 al:7
......................CGAUGGAACACACAAGcAGAGA................................................... len:22 al:1
......................aGAUGGAACACACAAGUAGAGA................................................... len:22 al:1
......................uGAUGGAACACACAAGUAGAGA................................................... len:22 al:3
......................CaAUGGAACACACAAGUAGAG.................................................... len:21 al:1
......................CGAUGGAACgCACAAGUAGAGA................................................... len:22 al:2
......................CGAUGGAcCACACAAGUAGAGA................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGAGA................................................... len:22 al:910
......................CGAUGGAACACACAAGUAGAGAU.................................................. len:23 al:21
......................CGAUGGAACACACAAGUgGAGA................................................... len:22 al:2
......................CGAUGGAACACACAAGUAGcGA................................................... len:22 al:1
......................CGAcGGAACACACAAGUAGAGA................................................... len:22 al:3
......................CGAUGGAACACACAAaUAGAGA................................................... len:22 al:3
......................CGAUGGAgCACACAAGUAGAG.................................................... len:21 al:2
......................CGAUGGAACACACAcGUAGAGA................................................... len:22 al:1
......................CGAUGGAgCACACAAGUAGAGA................................................... len:22 al:6
......................CGAUGGAACACACgAGUAGAGAUUAUAUAC........................................... len:30 al:1
......................CGAUGGAACACACAAGUAGAu.................................................... len:21 al:1
......................CGAUGGAACACACAAGUAGA..................................................... len:20 al:8
......................CGAUGGAACACACgAGUAGAGA................................................... len:22 al:3
......................CGAUGGAACACACAAGUAG...................................................... len:19 al:37
......................CGAUGGAACACACAAaUAGAGAUU................................................. len:24 al:1
......................CGAUGGAACAuACAAGUAGAGA................................................... len:22 al:2
......................CGAUGGAACACACAAGUAGAa.................................................... len:21 al:2
......................CGAUGGAACACACAuGUAGAGA................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGAGAa.................................................. len:23 al:3
......................CGAUGGAACACACAAGUAGAG.................................................... len:21 al:69
.......................GAUGGAACACACAAGUAGAGA................................................... len:21 al:13
.......................GAUGGAACACgCAAGUAG...................................................... len:18 al:1
.......................GAUGGAACACACAAGUAGAa.................................................... len:20 al:1
.......................GAUGGAACACACAAGUAGAG.................................................... len:20 al:1
........................AUGGAACACACAAGUAG...................................................... len:17 al:1
........................AUGGAACACACAAGUAGAGA................................................... len:20 al:4
........................AUGGAACACACAAGUAGAG.................................................... len:19 al:4
.........................UGGAACACACAAGUAGAGAU.................................................. len:20 al:2
.........................UGGAACACACAAGUAGAG.................................................... len:18 al:1
.........................UGGAACACACAAGUAGAGA................................................... len:19 al:4
....................................................UUUACUUGUcGUAUUCUAUUA...................... len:21 al:1
....................................................UUUACUUGUUGUAUUCUAUUAUuA................... len:24 al:4
....................................................UUUACUUGUUGUAUUCUAUUAUc.................... len:23 al:12
....................................................UUUACUUGUUGUAUUCUAUUA...................... len:21 al:3
....................................................UUUACUUGUUGUAUUCUAUUAUu.................... len:23 al:220
....................................................UUUACUUGUUGUAUUCUAU........................ len:19 al:2
....................................................UUUACUUGUUGUAUUCUAUU....................... len:20 al:27
....................................................UUUACUUGUUGUAUUCUAgU....................... len:20 al:1
....................................................UUUACUUGUUGUAUUCUA......................... len:18 al:1
....................................................UUUACUUGUUGUAUUCUAUUAUuAC.................. len:25 al:1
....................................................UUUACUUGUUGUAUUCUAUUAUA.................... len:23 al:3
....................................................UUUACUUGUUGUAUUCUAUUAUAu................... len:24 al:1
....................................................UUUACUUGUUGUAUUCUAUc....................... len:20 al:1
....................................................UUUACUUGUUGUAUUCUAUUAU..................... len:22 al:11
.....................................................UUACUUGUUGUAUUCUAUa....................... len:19 al:1
.....................................................UUACUUGUUGUAcUCUAUU....................... len:19 al:2
.....................................................UUACUUGUUGUAUUCcAUU....................... len:19 al:1
.....................................................UUACUUGUUGUAUUCUAUU....................... len:19 al:18
.....................................................UUACUUGUUGUAUUCUAUUAUuA................... len:23 al:2
.....................................................UUACUUGUUGUAUUCUAUUAU..................... len:21 al:10
.....................................................UUACUUGUUGUAUUCUAUUAUA.................... len:22 al:8
.....................................................UUACUUGUUGUAUUCUAUUAUc.................... len:22 al:20
.....................................................UUACUUGUUGUAUUCUAU........................ len:18 al:1
.....................................................UUACUUGUUGUAUUCUAUUAUu.................... len:22 al:145
.........................................................UUGUUGUAUUCUAUUAUuA................... len:19 al:1