Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000005:11260734-11260823 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1990.ps.pdf
Locus Name: Cluster_1990
UCUUUGUGUUAUUUCUUCCCAUGCCAGGUCCUAGCUUGAAAAUUGUGUUCAGGUUAGGAGCAUGGUAUAGAAAGAGAUGCACCUUGUUCA
.....((((.(((((((.(.(((((((.((((((((((((.......)))))))))))).).)))))).).)))))))))))........ (-35.10)
UCUUUGUGUUAUUUCUUCu....................................................................... len:19 al:1
UCUUUGUGgUAUUUCUUCC....................................................................... len:19 al:2
UCUUUGUGUUAUUUCUUCC....................................................................... len:19 al:6
cCUUUGUGUUAUUUCUUCC....................................................................... len:19 al:1
..................CCAUGCCAGGUCCUAGCUUGAAA................................................. len:23 al:1
...................CAUGCCAGGUCCUAaCUU..................................................... len:18 al:4
...................CAUGCCAGGUCCUAGaUU..................................................... len:18 al:1
...................CAUGCCAGGUCCUAGCUUGAAAA................................................ len:23 al:12
...................CAUGCCAGGUCCUAGCaUGAAA................................................. len:22 al:3
...................CAUGCCAGGUCCUAGCUUGc................................................... len:20 al:5
...................CAUGCCAGGcCCUAGCUUGAA.................................................. len:21 al:5
...................CAUGCCAGGUCCUAGCUc..................................................... len:18 al:9
...................CAUGCCAGGUCCUAaCUUGA................................................... len:20 al:17
...................CAUGCCAGGUCCUAGCc...................................................... len:17 al:2
...................CAUGCCAGGUCCUgGCUUGA................................................... len:20 al:3
...................CAUGCCAGGUCCUAGCUUGAAAuU............................................... len:24 al:28
...................CAUGCCAGGUCCUAGCUU..................................................... len:18 al:301
...................CAUGCCAGGUCCUAGuUUG.................................................... len:19 al:2
...................CAUGCaAGGUCCUAGCUUGA................................................... len:20 al:1
...................CAUGCCAGGUCCUAaCUUG.................................................... len:19 al:6
...................CAUGCCAGGUCCUAGuUUGAA.................................................. len:21 al:2
...................CAUGCCAGGUCCUAGCgU..................................................... len:18 al:3
...................CAUGCCAGGUCCUAaCUUGAAA................................................. len:22 al:27
...................CAUGCCAGGUCCUAGCUUG.................................................... len:19 al:113
...................CAUGCCAGGUCCUAGCUcGAAAAUUGUGUUC........................................ len:31 al:1
...................CAUGCCgGGUCCUAGCUUGAA.................................................. len:21 al:28
...................CAUGCCAGGUCCUAGCUUGcAA................................................. len:22 al:3
...................CgUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:16
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUUC........................................ len:31 al:3
...................CAUGCCAGGUCCUAG........................................................ len:15 al:6
...................CAUGCCAGGUCCUAGCUUGAAg................................................. len:22 al:15
...................CAUGCCcGGUCCUAGCUUGA................................................... len:20 al:3
...................CAUGCCAGaUCCUAGCUUGAA.................................................. len:21 al:2
...................CAUaCCAGGUCCUAGCUUGAAA................................................. len:22 al:2
...................CAUGCCgGGUCCUAGCU...................................................... len:17 al:1
...................CAUGCCAGGUaCUAGCUUGAA.................................................. len:21 al:1
...................uAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:124
...................CAUGCCAGGUCCUAGC....................................................... len:16 al:22
...................CAUGuCAGGUCCUAGCUUGAA.................................................. len:21 al:1
...................CAUGCCuGGUCCUAGCUUGAAAAUUGUGUU......................................... len:30 al:1
...................CAUGCCAGGUCCUAGCUaGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCcUGAAA................................................. len:22 al:7
...................CAUGCCAGGUCCUuGCUUGA................................................... len:20 al:1
...................aAUGCCAGGUCCUAGCUUGA................................................... len:20 al:3
...................CAUGaCAGGUCCUAGCUUGA................................................... len:20 al:1
...................CAcGCCAGGUCCUAGCUUGAA.................................................. len:21 al:5
...................CAUGCCAGGUCCUgGCUUGAA.................................................. len:21 al:4
...................CAUGCCAGGcCCUAGCUUGA................................................... len:20 al:2
...................CcUGCCAGGUCCUAGCUUGA................................................... len:20 al:1
...................CAUGCCAGGUCCUAGu....................................................... len:16 al:1
...................uAUGCCAGGUCCUAGC....................................................... len:16 al:2
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUaUU......................................... len:30 al:1
...................CAUGCCAGGUCuUAGCUUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCgUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUG............................................. len:26 al:1
...................CAUGCCAGGUaCUAGCUUGA................................................... len:20 al:1
...................uAUGCCAGGUCCUAGCUUGA................................................... len:20 al:68
...................CAUGCCAGGUCCUAGCUUGAAAgUU.............................................. len:25 al:1
...................CAUGCCAGGUCCUAGCUUGgA.................................................. len:21 al:6
...................CAUGCCAGGUCCUAaCUUGAA.................................................. len:21 al:14
...................gAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................uAUGCCAGGUCCUAGCUUGAAAAUU.............................................. len:25 al:1
...................CAUGCCAGGUCuUAGCUUGA................................................... len:20 al:4
...................uAUGCCAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:30 al:4
...................CAUGCCAGGUCCUAGCUUGAAuA................................................ len:23 al:13
...................CAUGCCAGGUCCUAGCUcGA................................................... len:20 al:1
...................CAUGCCAGGUCCUAGCUUa.................................................... len:19 al:6
...................CAcGCCAGGUCCUAGCUU..................................................... len:18 al:1
...................CAUGuCAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCaAGCUU..................................................... len:18 al:1
...................CAUGCCAGGUCCUAGCUUGAAc................................................. len:22 al:28
...................CAUGCCAGGUCCUcGCUUGAAA................................................. len:22 al:2
...................CAUGCCAGGUCCUAGCUUGgAA................................................. len:22 al:7
...................CAUGCCAGGUCCUAGCUa..................................................... len:18 al:6
...................CAUGCCAGGUCCUAGCcUGAA.................................................. len:21 al:5
...................CgUGCCAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:30 al:1
...................CAUGCCAGGUCCUAGuUUGAAA................................................. len:22 al:3
...................CAUGCCAGGUCCUAGuUU..................................................... len:18 al:2
...................CAUGCCAGGUCCUAGCUUu.................................................... len:19 al:8
...................CuUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:3
...................CAUGCCAGGUCCUAGCUUGAc.................................................. len:21 al:2
...................CAUGCCAGGUCCUAGCUUGAu.................................................. len:21 al:58
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUG........................................... len:28 al:4
...................CAUGaCAGGUCCUAGCUUGAAA................................................. len:22 al:2
...................CAUGCCAGGUCCUAGuUUGA................................................... len:20 al:2
...................CAUGCCAGGUCCUAGCa...................................................... len:17 al:1
...................uAUGCCAGGUCCUAGCUU..................................................... len:18 al:4
...................CAUuCCAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAAAc................................................ len:23 al:25
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUa......................................... len:30 al:1
...................CAUGCCAaGUCCUAGCUUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUGU............................................ len:27 al:1
...................aAUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:3
...................CgUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:2
...................CAUGCCAaGUCCUAGCUUGA................................................... len:20 al:1
...................CAUGCCAGGUCCUAGCUUGAg.................................................. len:21 al:6
...................CAUGCCAGGUCCUcGCUUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUcG.................................................... len:19 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGU.......................................... len:29 al:13
...................CAaGCCAGGUCCUAGCUUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUcGAAA................................................. len:22 al:3
...................CAUGCCAGGUCCUAGCUUGu................................................... len:20 al:32
...................CAUGCCAGGUCCUAGCUUcAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUc......................................... len:30 al:4
...................CAUGCCAGGUCCUAGCU...................................................... len:17 al:14
...................CAUGCCAGGUCCUAGCUUGAAAAU............................................... len:24 al:1
...................CAUGCCAGGUCCaAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:1668
...................CAUGCCAGGUCCUAGCUUGAAuAU............................................... len:24 al:3
...................CAUGCuAGGUCCUAGCUUGA................................................... len:20 al:1
...................CAUGCCAGGUuCUAGCUUGAAA................................................. len:22 al:2
...................CAUGCCAGGUCCUAGCUUGAgA................................................. len:22 al:9
...................uAUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:55
...................CAUGCCAGGUCCUAuCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCaUGAA.................................................. len:21 al:2
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:30 al:35
...................CAUGCCAGGUCCUAGCUUGAAAAgU.............................................. len:25 al:1
...................CAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:2489
...................CAUGCCgGGUCCUAGCUUGAAAAUUGUG........................................... len:28 al:3
...................CAUGCCAuGUCCUAGCUUGAAA................................................. len:22 al:2
...................CAUGCuAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAcGCCAGGUCCUAGCUUGAAA................................................. len:22 al:5
...................CAUGCCAGGUCCUgGCUUGAAA................................................. len:22 al:8
...................CAUGCCgGGUCCUAGCUU..................................................... len:18 al:4
...................CAUGCCuGGUCCUAGCUUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUUGAAAcU............................................... len:24 al:9
...................CAUGCCAGGUCCUAGCUUGAAAAUU.............................................. len:25 al:1
...................CAUGCCAGGUCCUAGCUUGAAAgU............................................... len:24 al:1
...................CAUGCuAGGUCCUAGCUUGAA.................................................. len:21 al:4
...................aAUGCCAGGUCCUAGCUUG.................................................... len:19 al:1
...................CAgGCCAGGUCCUAGCUUGA................................................... len:20 al:2
...................aAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:8
...................CAcGCCAGGUCCUAGCUUGA................................................... len:20 al:6
...................CAUGCCcGGUCCUAGCUUGAAA................................................. len:22 al:5
...................CAUGCCuGGUCCUAGCUUGAAA................................................. len:22 al:3
...................CAUGCCAGGcCCUAGCUUGAAA................................................. len:22 al:6
...................CAUGCCAGGUCCcAGCUUGAAA................................................. len:22 al:8
...................CAUGuCAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:30 al:1
...................CAcGCCAGGUCCUAGCUUG.................................................... len:19 al:1
...................CAUGCCAGGUCCaAGCUUGA................................................... len:20 al:1
...................CAUGCCAGGUCCcAGCUUGAA.................................................. len:21 al:2
...................CAUaCCAGGUCCUAGCUU..................................................... len:18 al:1
...................CAUGuCAGGUCCUAGCUUG.................................................... len:19 al:2
...................CAUGCCAGGUCCUAGCUUGAAAAa............................................... len:24 al:1
...................CAUGCuAGGUCCUAGCUUGAAAAUU.............................................. len:25 al:1
...................CAUGCCAGGaCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUcGAA.................................................. len:21 al:3
...................CAUGCCAGGUCCcAGCUUGA................................................... len:20 al:4
...................CAUGCCgGGUCCUAGCUUGA................................................... len:20 al:17
...................CAUGCCAGGUCCcAGCUU..................................................... len:18 al:4
...................CAUGCCgGGUCCUAGCUUG.................................................... len:19 al:5
...................CAcGCCAGGUCCUAGCUUGAAAAUU.............................................. len:25 al:2
...................CAUGCCAGGUCCUAGCaU..................................................... len:18 al:4
...................CAUGCaAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCcGGUCCUAGCUUGAA.................................................. len:21 al:4
...................CAUGCCAGGUCCUAGCUUGA................................................... len:20 al:815
...................CAUGCCAGGUCCUAGCUUGAAAu................................................ len:23 al:215
...................CAUGCCAGGUCCUAGCUUGAAu................................................. len:22 al:503
...................CAUGCCAGGUCuUAGCUUGAAA................................................. len:22 al:1
...................uAUGCCAGGUCCUAGCUUG.................................................... len:19 al:14
...................CAUGCCAGGUCCUAGCUUGAAAg................................................ len:23 al:1
...................CAUGCCgGGUCCUAGCUUGAAA................................................. len:22 al:50
...................CAUaCCAGGUCCUAGCUUGAA.................................................. len:21 al:5
...................CgUGCCAGGUCCUAGCUUGA................................................... len:20 al:2
...................CAUGCaAGGUCCUAGCUUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUUGg................................................... len:20 al:4
...................CAUGCCAGGUCCUAGCUUGAAAAUUu............................................. len:26 al:1
....................AUGCCAGGUCCUAGCUUG.................................................... len:18 al:2
....................uUGCCAGGUCCUAGCUUGAA.................................................. len:20 al:1
....................AUGCCAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:29 al:2
....................AUGCCAGGUCCUAGCUUGAAAcU............................................... len:23 al:1
....................AUGCCAGGUCCUAGCUUGAAAu................................................ len:22 al:1
....................AUGCCAGGUCCUAGCUUGAgA................................................. len:21 al:1
....................AUGCCAGGUCCUAGCUUGAA.................................................. len:20 al:11
....................AUGCCAGGUCCUAGCUU..................................................... len:17 al:1
....................AUGCCAGGUCCUAGCUUGAAA................................................. len:21 al:20
....................AUGCCAGGUCCUAGCUUGA................................................... len:19 al:3
....................AUGCCAGGUCCUAGC....................................................... len:15 al:1
....................AUGCCAGGUCCUAGCUUGAAu................................................. len:21 al:10
....................AUGCCcGGUCCUAGCUUGAAAAUUGUGU.......................................... len:28 al:1
.....................UGCCAGGUCCUAGCUUGA................................................... len:18 al:7
.....................UGCCAGGUCCUAGCUUGAAA................................................. len:20 al:26
.....................UGCCAGGUCCUAGCUUGAA.................................................. len:19 al:12
.....................UGCCAGGUCCUAGCUUGAAu................................................. len:20 al:23
.....................UGCCAGGUCCUAGCgUGA................................................... len:18 al:1
.....................UGCCAGGUCCUAGCUcGA................................................... len:18 al:1
.....................UGCCAGGUCCUAGCUUGAAAAUUGUGgU......................................... len:28 al:1
.....................UGCCAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:28 al:1
.....................UGCCAGGUCCUAGCUUGAu.................................................. len:19 al:3
.....................UGCCAGGUCCUAGCUUGAAAuU............................................... len:22 al:2
.....................UGCCAGGUCCUAGCUUGAAAAUUGUGUUC........................................ len:29 al:1
.....................UGCCAGGUCCUAGCUUGAAAu................................................ len:21 al:4
.......................CCAGGUCCUAGCUUGAAAAcU.............................................. len:21 al:1
........................CAGGUCCUAGCUUGAAAAUUGUG........................................... len:23 al:1
........................CAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:25 al:2
........................CAGGUCCUAGCUUGAAAAUUGUGUUCA....................................... len:27 al:1
........................CAGGUCCUAGCUUGAAAAUUGUGUUCAGGUU................................... len:31 al:2
.........................AGGUCCUAGCUUGAAA................................................. len:16 al:1
.....................................GAAAAUUGUGUUCAGGUUAGGAGCAUG.......................... len:27 al:1
........................................AAUUGUGUUCAGGUUAGGA............................... len:19 al:1
........................................AAUUGUGUUCAGGUUAGGAGCAUGGUAUAGA................... len:31 al:2
........................................AAUUGUGUUCAGGUUAGGAGCAUG.......................... len:24 al:2
.........................................AUUGUGUUCAGGcUAGGAGCAU........................... len:22 al:1
...........................................UGUGUUCAGGUUAGGAGCAUGGUAUAGu................... len:28 al:1
.............................................UGUUCAGGUUAGGAGCAUGGU........................ len:21 al:2
.............................................UGUUCAGGUUAGGAGCAUGGUAUAGAA.................. len:27 al:2
.............................................UGUUCAGGUUAGGAGCAUGGUAUAG.................... len:25 al:4
.............................................UGUUCAGGUUAGGAGCAUGGUAUA..................... len:24 al:1
.............................................UGUUCAGGUUAGGAGCAUGGUAUAGAu.................. len:27 al:3
.............................................UGUcCAGGUUAGGAGCAUGGUAUAG.................... len:25 al:1
.............................................UGUUCAGGUUAGGAGCAUGGUAc...................... len:23 al:3
.............................................UGUUCAGGUUAGGAGCAUGGUAUAGA................... len:26 al:9
.............................................UGUUCAGGUUAGGAGCAUGGUAUu..................... len:24 al:2
.............................................UGUUCAGGUUAGGAGCAUGGUAUAGu................... len:26 al:1
.............................................UGUUCAGGUUAGGAGCAUGGUAU...................... len:23 al:15
..............................................GUUCAGGUUAGGAGCAUGGUAUAGA................... len:25 al:2
..............................................aUUCAGGUUAGGAGCAUGGUAUAGA................... len:25 al:1
..............................................GUUCAGGUUAGGAGCAUGGUAUAG.................... len:24 al:1
...............................................UUCAGGUUAGGAGCAUaGUAUAG.................... len:23 al:1
...............................................UUCAGGUUAGGAGCAUGGUAU...................... len:21 al:24
...............................................UUCAGGUUAGGAGuAUGGUAUAGA................... len:24 al:2
...............................................UUCAGGUUAGGAGCAUGGUA....................... len:20 al:2
...............................................UUCAGGUUAGGAGCgUGGUA....................... len:20 al:1
...............................................UUCAGGUUAGGAGCAUGGUAUAGu................... len:24 al:4
...............................................UUCAGGUUAGGAGCAUGGU........................ len:19 al:2
...............................................UUCAGGUUAGGAGCAUGGUAUAG.................... len:23 al:5
...............................................cUCAGGUUAGGAGCAUGGU........................ len:19 al:1
...............................................UUCAGGUUAGGAGCAUGGUAUAGAc.................. len:25 al:1
...............................................cUCAGGUUAGGAGCAUGGUAUAGA................... len:24 al:5
...............................................UUCAGGUUAGGAGCAUGGcAUAGA................... len:24 al:1
...............................................UUCAGGUUAGGAGCAUGGUAc...................... len:21 al:1
...............................................UUCAGGUUAGGAGCAUGGUAUAGA................... len:24 al:50
................................................gCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:3
................................................UCAGGUUAGGAGCAUGGUAUAGAAg................. len:25 al:1
................................................UCgGGUUAGGAGCAUGGUA....................... len:19 al:1
................................................UCAGGUUAGGAGCgUGGUAUAGAA.................. len:24 al:2
................................................UCAaGUUAGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUGaUAUAGA................... len:23 al:19
................................................UCAGGUUAGGAGCAUGGUuUAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAUGGcA....................... len:19 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAAAu................ len:26 al:5
................................................UCAGGUUAGGAGCAUGGUAUgGAA.................. len:24 al:3
................................................UCAGGUUAuGAGCAUGGUAUAGA................... len:23 al:2
................................................UCAGGUUcGGAGCAUGGUAUAGA................... len:23 al:12
................................................UCAGGUUAGGAGCAUGGUAUgGA................... len:23 al:116
................................................UCAGGUUAGaAGCAUGGUAU...................... len:20 al:3
................................................UCAGGUUAGGAGCAaGGUAUAGA................... len:23 al:7
................................................UCAGuUUAGGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGcGCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUaGUAUAGA................... len:23 al:13
................................................UCAGGUUAGGAGCAUGGUgUA..................... len:21 al:1
................................................UCcGGUUAGGAGCAUGGUAU...................... len:20 al:11
................................................UCAGGUUAGGAGCAUGGUgUAGA................... len:23 al:49
................................................UCAGGUUAGGAGCAUaGUAUAG.................... len:22 al:6
................................................UCAGGcUAGGAGCAUGGUAUAGA................... len:23 al:58
................................................UCgGGUUAGGAGCAUGGUAU...................... len:20 al:32
................................................UCAGGUUAGGAGCAUGGUAUAGAu.................. len:24 al:1120
................................................UCAGGUcAGGAGCAUGGUAU...................... len:20 al:5
................................................UCAGGUUAGGAGCAUGGUAUAGAAA................. len:25 al:5
................................................UuAGGUUAGGAGCAUGGUAUAG.................... len:22 al:4
................................................UCAGGUUAGGAcCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAUGGUAUA..................... len:21 al:226
................................................UCAGGUUAGuAGCAUGGUAUAGA................... len:23 al:1
................................................UCAuGUUAGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUGGUAU...................... len:20 al:10625
................................................UCAGuUUAGGAGCAUGGUA....................... len:19 al:1
................................................UCAGGUUAGGcGCAUGGUAUAG.................... len:22 al:2
................................................UCAGGUUAGGAGCAUGGgAU...................... len:20 al:1
................................................UgAGGUUAGGAGCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGGAuCAUGGUAUAGAAA................. len:25 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAc.................. len:24 al:69
................................................UCAaGUUAGGAGCAUGGUAUAG.................... len:22 al:5
................................................UCAGGcUAGGAGCAUGGUAUA..................... len:21 al:1
................................................UCAGGUUAGGuGCAUGGUAUAGA................... len:23 al:2
................................................UCAGGUUAGGAaCAUGGUAU...................... len:20 al:15
................................................UCAGGUUAcGAGCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGaAGCAUGGUAUAGA................... len:23 al:13
................................................UCAGGUUAGGAGCAUGGUAUAGAAc................. len:25 al:2
................................................aCAGGUUAGGAGCAUGGUAUAG.................... len:22 al:4
................................................UCAGGUUAGGAGCAUGGUAaAGA................... len:23 al:1
................................................UCAGGUUcGGAGCAUGGUAUA..................... len:21 al:1
................................................aCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:34
................................................UCAGGUUAGGAGCAUGGUAUAGu................... len:23 al:1587
................................................UCAGGUUAGGAGCAUGGUAUAa.................... len:22 al:124
................................................UCAGGUUAGGAGCAUGuU........................ len:18 al:4
................................................UCgGGUUAGGAGCAUGGUAUAG.................... len:22 al:13
................................................UCAGGUUAGGAGCAUGGUAUAG.................... len:22 al:3702
................................................UCAGGUUAGGAGCgUGGUAU...................... len:20 al:13
................................................UCAGGUUAaGAGCAUGGUAUAGA................... len:23 al:4
................................................UCAGGUcAGGAGCAUGGUAUAG.................... len:22 al:3
................................................UCAGGUUAGGAGCAUGGUAUAGAAAGc............... len:27 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGg................... len:23 al:110
................................................UCAGGUUAGGAGCAUuGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGuAUGGU........................ len:18 al:2
................................................UCAGGUUAGGAGCAUGGUAgA..................... len:21 al:6
................................................UCAGGUUgGGAGCAUGGUA....................... len:19 al:1
................................................UCAGGUaAGGAGCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGGgGCAUGGUAUA..................... len:21 al:1
................................................UCAGGUUAGGAGCAUGGg........................ len:18 al:2
................................................aCAGGUUAGGAGCAUGGUAU...................... len:20 al:16
................................................UCAGGUUAGGAGCAaGGUAUAG.................... len:22 al:1
................................................UCAGGUUuGGAGCAUGGUAUAGA................... len:23 al:6
................................................UaAGGUUAGGAGCAUGGUAUAGA................... len:23 al:1
................................................cCAGGUUAGGAGCAUGGUAUA..................... len:21 al:1
................................................UCAGGUUAGGAGCAUGGUgU...................... len:20 al:197
................................................UCAGGUUAGGAGCAUGGUAUAGAAu................. len:25 al:29
................................................cCAGGUUAGGAGCAUGGUAUAGAA.................. len:24 al:1
................................................UCAGGUUAGGAGCAUGaUAU...................... len:20 al:52
................................................UCAGGUUAGGAGuAUGGUA....................... len:19 al:1
................................................cCAGGUUAGGAGCAUGGUAUAG.................... len:22 al:14
................................................UCAGGUUAGGAGCAUGGUA....................... len:19 al:343
................................................UCAGGUUAGGAGCAUGGUgUAG.................... len:22 al:7
................................................UCAGGUUAGGAGCuUGGUAU...................... len:20 al:8
................................................UCAGGUUAGGAGCAUGuUAU...................... len:20 al:5
................................................aCAGGUUAGGAGCAUGGUAUA..................... len:21 al:1
................................................UCAGGUUAGGAGCAUGGUg....................... len:19 al:2
................................................UCAaGUUAGGAGCAUGGUAU...................... len:20 al:12
................................................cCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:93
................................................UCAGGUUAGGAGCAUGGUAg...................... len:20 al:35
................................................UCAGGUUAGGAGCAUuGUAUAG.................... len:22 al:1
................................................UCAGGUUgGGAGCAUGGUAUAGA................... len:23 al:56
................................................UCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:21547
................................................UCAaGUUAGGAGCAUGGUAUAGA................... len:23 al:21
................................................UCAGGUUAGGAGuAUGGUAU...................... len:20 al:19
................................................UCAGGUUAGGAaCAUGGUAUAGA................... len:23 al:12
................................................UCAGGUUAGGAGCAUGGUAa...................... len:20 al:54
................................................UCAGGUUAGGAGCAUGGUAUAGAAAG................ len:26 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAg.................. len:24 al:14
................................................UCAGGUUAGGAGCAUGGgAUAGA................... len:23 al:3
................................................UCAGGUUAGGAGCgUGGUAUAGA................... len:23 al:65
................................................cCAGGUUAGGAGCAUGGUAU...................... len:20 al:56
................................................UCAGGUUAGGAGCAUGGUAUAGAAAuA............... len:27 al:1
................................................UCAGGaUAGGAGCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUuGGAGCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGGUAUuG.................... len:22 al:5
................................................UCAGGUUcGGAGCAUGGUAUAG.................... len:22 al:1
................................................UCAGGUUAGGAGCAUGaUAUAG.................... len:22 al:6
................................................UCgGGUUAGGAGCAUGGUAUAGA................... len:23 al:77
................................................UCAGGUUAGGAGCAUGaU........................ len:18 al:11
................................................UCAGGUUuGGAGCAUGGUAUAG.................... len:22 al:3
................................................UCAGuUUAGGAGCAUGGUAUAGAA.................. len:24 al:1
................................................UCAGGUUAGGAGCAUGGUAaA..................... len:21 al:1
................................................UCAGGUUAGGAGCAUGGcAUAG.................... len:22 al:4
................................................UCAGGUUAGGgGCAUGGUAU...................... len:20 al:39
................................................UCAGaUUAGGAGCAUGGUAUAGA................... len:23 al:7
................................................UCAGGUUAGGAGuAUGGUAUAG.................... len:22 al:4
................................................UCcGGUUAGGAGCAUGGUAUAGA................... len:23 al:15
................................................UCAGGUUAGGAuCAUGGUAUAGA................... len:23 al:4
................................................UCAGGUUgGGAGCAUGGUAUAG.................... len:22 al:8
................................................UCAGGUUAGGAGCAUaGUAU...................... len:20 al:4
................................................UCAGGgUAGGAGCAUGGUAU...................... len:20 al:1
................................................UCAuGUUAGGAGCAUGGUAU...................... len:20 al:3
................................................UCAGGUUAGGAGaAUGGU........................ len:18 al:1
................................................UuAGGUUAGGAGCAUGGUAU...................... len:20 al:5
................................................gCAGGUUAGGAGCAUGGU........................ len:18 al:1
................................................UuAGGUUAGGAGCAUGGUAUAGA................... len:23 al:19
................................................UCAGGUUAGGAGCAUGGcAU...................... len:20 al:9
................................................UCAGGUUAGGAGuAUGGUAUAGA................... len:23 al:27
................................................UCAGGUUAGGAGCuUGGUAUAGA................... len:23 al:3
................................................UCAGGUUgGGAGCAUGGUAU...................... len:20 al:32
................................................UCAGGUUAGGAGCAUGGUAUAcA................... len:23 al:1
................................................UCAGGUUAGGAGCAcGGUAUAG.................... len:22 al:7
................................................UCAGGUUAGGAGCAUGGUcU...................... len:20 al:5
................................................UCAGGUUAGGAGCAcGGUAUAGA................... len:23 al:47
................................................UCAGGUUAGGAGCAUGGUAUAc.................... len:22 al:15
................................................UCAGGUUAGGAGCAgGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAUG.......................... len:16 al:8
................................................UCAGGUUAGGAGCAUGGUAUAaA................... len:23 al:5
................................................UCAGGUUAGGAGCAUGGaAUAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAUGuUAUAG.................... len:22 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAcA................. len:25 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAA.................. len:24 al:152
................................................UCAGGUUuGGAGCAUGGUA....................... len:19 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAuA................. len:25 al:220
................................................UCAGGUUAGGAuCAUGGUAUAG.................... len:22 al:1
................................................UCAGGUUAGGgGCAUGGUAUAGA................... len:23 al:77
................................................UCAGGUUAGGAaCAUGGUAUAG.................... len:22 al:5
................................................UCAGGUUAGGuGCAUGGUAUAG.................... len:22 al:1
................................................UCAGGUUAGGAGCAUuGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUGGUAUAu.................... len:22 al:91
................................................UCAGGUUAGGuGCAUGGUAU...................... len:20 al:8
................................................UCuGGUUAGGAGCAUGGUAU...................... len:20 al:11
................................................UCAGGUUAGGAGCAUGaUA....................... len:19 al:4
................................................UCAGGUUAGGAGCAUGGUuU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGG......................... len:17 al:2
................................................UCAGGUUAGGAGCAUGGa........................ len:18 al:10
................................................UCAGGUUAGaAGCAUGGU........................ len:18 al:2
................................................UCAGGUUAGGAuCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGcUAU...................... len:20 al:2
................................................UCcGGUUAGGAGCAUGGUAUAG.................... len:22 al:3
................................................UCAGGUUAGGcGCAUGGUAUAGA................... len:23 al:7
................................................UCuGGUUAGGAGCAUGGUAUAG.................... len:22 al:5
................................................UCAGGUUAGGAGCAUGGUAUg..................... len:21 al:1
................................................UCAGGUUAGGAGCAUGGUAUcG.................... len:22 al:1
................................................UCAGGUUAGGAGCAUGGUAUc..................... len:21 al:3
................................................UCAGGUUAGGAGCAUGGUAcAGA................... len:23 al:25
................................................UCAGGUUAuGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGgGCAUGGUAUAG.................... len:22 al:17
................................................UCAGuUUAGGAGCAUGGUAUAGA................... len:23 al:3
................................................UCAGGUUgGGAGCAUGGU........................ len:18 al:4
................................................UCAGGUUAGGAGCAUGGUAUcGA................... len:23 al:2
................................................UCAGGUUAGuAGCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGGUAUgG.................... len:22 al:24
................................................UCAGGUUAGGgGCAUGGU........................ len:18 al:1
................................................gCAGGUUAGGAGCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGGcAUAGA................... len:23 al:31
................................................UCAGGUUAGGAGCAUGGUAUu..................... len:21 al:21
................................................UCAGGUUAGGAGCAUGGU........................ len:18 al:263
................................................UCAGGUUAGGAGCAUGGUAUAaAA.................. len:24 al:2
................................................UCAGGUUAGGAGCAUGGUAc...................... len:20 al:620
................................................UCAGGUUAGGAGCAUGGUAcAGAA.................. len:24 al:1
................................................UCAGGUUAGGAGCAaGGUAU...................... len:20 al:4
................................................UCAGGUUAGGAGCAUGGc........................ len:18 al:20
................................................UCAGaUUAGGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGgGCAUGGUAUAGAA.................. len:24 al:1
................................................cCAGGUUAGGAGCAUGGUA....................... len:19 al:2
................................................UCAGGUUAGGAGCAcGGUAUAGAA.................. len:24 al:2
................................................UCAGGUUAGGAGCAcGGUAU...................... len:20 al:18
................................................UCuGGUUAGGAGCAUGGUAUAGA................... len:23 al:15
................................................UCAGGUUAGGAGCAUGGUAUuGA................... len:23 al:4
................................................UCAGGUUcGGAGCAUGGUAU...................... len:20 al:10
................................................UCAGGUcAGGAGCAUGGUAUAGA................... len:23 al:26
................................................UCAGGgUAGGAGCAUGGUAUAGA................... len:23 al:2
................................................UCAGGcUAGGAGCAUGGUAUAG.................... len:22 al:7
................................................UCAGGUUAGGAGCAUGGUcUAGA................... len:23 al:2
................................................UCAGGUUAGGAGCAUGcU........................ len:18 al:2
................................................UgAGGUUAGGAGCAUGGUAU...................... len:20 al:2
................................................UCAGGcUAGGAGCAUGGU........................ len:18 al:2
................................................UCAGGUUAGGAGCAgGGUAU...................... len:20 al:7
................................................UCAGGUUAGGAGCAUGGUAUAGc................... len:23 al:114
................................................UCAGGUUAGGAGCAUuGUAUAGA................... len:23 al:2
................................................UCAGGUUAGGAGCAUGGUAUAGAAAa................ len:26 al:1
................................................UCAGGcUAGGAGCAUGGUAU...................... len:20 al:33
................................................UCAGGUUAGGAGCgUGGUAUAG.................... len:22 al:9
................................................UCAGaUUAGGAGCAUGGUAUAG.................... len:22 al:3
................................................UCAGGUUAGGAGCAcGGUA....................... len:19 al:2
.................................................CAGGUUAGGAGCAUGGUAUAGAA.................. len:23 al:3
.................................................CAGGUUAGGAGCAUGGUAU...................... len:19 al:23
.................................................CAGGUUAGGAGCAUGGUA....................... len:18 al:3
.................................................CAGGUUAGGAGCAUGGUAUAGu................... len:22 al:2
.................................................CAGGUUAGGAGCAUGGUAUAGAuA................. len:24 al:5
.................................................CAGGUUAGGAGCAUGGUAUAGAu.................. len:23 al:12
.................................................CAGGUUAGGAGCAUGGUAc...................... len:19 al:3
.................................................CAGGUUAGGAGCAUGG......................... len:16 al:1
.................................................uAGGUUAGGAGCAUGGUAU...................... len:19 al:1
.................................................CAGGUUAGGAGCAUGGUAUAG.................... len:21 al:13
.................................................CAGGUUAGGAGCAUGGUAUAGA................... len:22 al:65
..................................................AGGUUAGGAGCgUGGUAUAGA................... len:21 al:1
..................................................AGGUUAGGAGCAUGaUAUAGA................... len:21 al:2
..................................................AGGUUAGGAGCAUGGUAUAGA................... len:21 al:23
..................................................AGGUUAGGAGCAUGGUAUAGAuA................. len:23 al:1
..................................................AGGUUAGGAGCAUGGUAUA..................... len:19 al:2
..................................................AGGUUAGGAGCAUGGUAUAG.................... len:20 al:3
..................................................AGGcUAGGAGCAUGGUAU...................... len:18 al:1
..................................................AGGUUAGGAGCAcGGUAUAG.................... len:20 al:2
..................................................AGGUUAGGAGCAUGGUAU...................... len:18 al:4
..................................................AGGUUAGGAGCAUGGUAc...................... len:18 al:3
..................................................AGGUUAGGAGCAUGGUAUAGAu.................. len:22 al:1
..................................................AGGUUAGGAGCAUGGUgU...................... len:18 al:2
..................................................AGGUUAGGAGCuUGGUAU...................... len:18 al:1
..................................................AGGUUAGGAGCAUGGUAUAGAc.................. len:22 al:1
...................................................GGUUAGGAGCAUGGUAUAGu................... len:20 al:1
...................................................GGUUAGGAGCAUGGUAUAGAAAGAGAUGCA......... len:30 al:2
...................................................GGUUAGGAGCAUGGUAUAGA................... len:20 al:6
....................................................GUUAGGAGCAUGGUAUAGA................... len:19 al:2
....................................................GUUAGGAGCAUGGUAUAG.................... len:18 al:1
....................................................GUUAGGAGCAUGGUAUAGu................... len:19 al:2
.....................................................UUAGGAGCAUGGUAUAGAA.................. len:19 al:1
.....................................................UUAGGAGCAUGGUAUAGA................... len:18 al:2
.......................................................AGGAGCAUGGUAUAGAuA................. len:18 al:2
.................................................................UAUAGAAAGAGAUGCACCUUGUU.. len:23 al:3
.......................................................................AAGAGAUGCcCCUUGUUCA len:19 al:1