Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000005:10385497-10385597 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1970.ps.pdf
Locus Name: Cluster_1970
CACUUAGACUAUUCUCAUUUCAUCAGGGAUUGUGGUGAGUUAGUUGUUUUAUUUGCAACCAGCUCAUAUCAGUACCUGCUAAAAUUUGAAUAAAUAUUCAC
.........(((((..((((...((((.((((..(((((((.(((((.......))))).)))))))..)))).))))...))))..)))))......... (-26.70)
CACUUuGACUAUUCUCAUUUCA............................................................................... len:22 al:2
CACUUuGACUAUUCUCAUUUCAUCAGGGAUU...................................................................... len:31 al:1
.ACUUuGACUAUUCUCAUUUCA............................................................................... len:21 al:3
..CUUuGACUAUUCUCAUUUC................................................................................ len:19 al:1
..CUUuGACUAUUCUCAUUUCAU.............................................................................. len:21 al:2
..CUUuGACUAUUCUCAUUU................................................................................. len:18 al:1
..CUUuGACUAUUCUCAUUUCA............................................................................... len:20 al:7
.............CUCAUUUCAUCAGGGAUUGUGGU................................................................. len:23 al:2
.............CUCAUUUCAUCAGGGAUUGUGGUG................................................................ len:24 al:1
..............UCAUUUCAUCAGGGAUUGUGGU................................................................. len:22 al:1
...............CAUUUCAUCAGGGgUUGUGGUGA............................................................... len:23 al:1
................AUUUCAUCAGGGAUUGUGGUG................................................................ len:21 al:2
................AUUUCAUCAGGGAUUGUGGUGAGUU............................................................ len:25 al:1
................AUUUCAUCAGGGAUUGUGGUGAGUUAGU......................................................... len:28 al:1
................AUUUCAUCAGGGAUUGUGGU................................................................. len:20 al:1
..................UUCAUCAGGGAUUGUGGUGAGUU............................................................ len:23 al:1
..................UUCAUCAGGGAUUGUGGU................................................................. len:18 al:1
....................aAUCAGGGAUUGUGGUGAGUUAGUU........................................................ len:25 al:1
.....................AUCAGGGAUUGUGGUGAGUUA........................................................... len:21 al:2
.....................cUCAGGGAUUGUGGUGAGUUAGUU........................................................ len:24 al:8
.....................cUCAGGGAUUGUGGUGAGUUAG.......................................................... len:22 al:1
.....................AUCAGGGAUUGUGGUGAGgU............................................................ len:20 al:1
.....................cUCAGGGAUUGUGGUGAGUU............................................................ len:20 al:5
.....................cUCAGGGAUUGUGGUGAGUUAGU......................................................... len:23 al:1
.....................cUCAGGGAUUGUGGUGAGU............................................................. len:19 al:1
.....................cUCAGGGAUUGUGGUGAGUUA........................................................... len:21 al:1
.....................AUCAGGGAUUGUGGUGAGUU............................................................ len:20 al:2
.....................AUCAGGGAUUGUGGUGAGUUAGUUG....................................................... len:25 al:1
......................UCAuGGAUUGUGGUGAGUU............................................................ len:19 al:2
......................UCAGGGAUUGUGaUGAGUUAGUU........................................................ len:23 al:52
......................UCAGGGAUUGUGGUGAaUU............................................................ len:19 al:6
......................UCAGGGAUUGUGGUaAGUUAGUU........................................................ len:23 al:19
......................UCAGGGAUUGUGGUGAGUUAGUUaUUU.................................................... len:27 al:3
......................cCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:135
......................UCuGGGAUUGUGGUGAGUU............................................................ len:19 al:5
......................UCAGGuAUUGUGGUGAGUUAG.......................................................... len:21 al:1
......................UCAuGGAUUGUGGUGAGUUAGU......................................................... len:22 al:1
......................UCAaGGAUUGUGGUGAGUU............................................................ len:19 al:9
......................UCcGGGAUUGUGGUGAGU............................................................. len:18 al:1
......................UCAGGGAUUGUcGUGAGUUAG.......................................................... len:21 al:1
......................UgAGGGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAGGGAUUaUGGUGAGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUuAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUaUGGUGAGUUAGU......................................................... len:22 al:8
......................UCgGGGAUUGUGGUGAGUU............................................................ len:19 al:40
......................UCAGGGAUUGUGGUGAGUUAGUUcUUU.................................................... len:27 al:1
......................UCAGGGAUUGUGGUGAGUUuG.......................................................... len:21 al:2
......................UCAGGGAUUcUGGUGAGUUAG.......................................................... len:21 al:2
......................UCAGGGAUUGUGGUGgGUUAGUU........................................................ len:23 al:277
......................UgAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGaGGUGAGU............................................................. len:18 al:1
......................UgAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:3
......................UuAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:51
......................UCAGGGAUUGUGGUGAGUUAc.......................................................... len:21 al:25
......................UCAGGGAUUGUGGgGAGUU............................................................ len:19 al:2
......................UCAGGGAUUGUGGUGgGUUAG.......................................................... len:21 al:29
......................UCAGGGAUUGUGGUGAGUUAGgU........................................................ len:23 al:1238
......................UCAGGGAUUGUGGUGAGaUA........................................................... len:20 al:4
......................UCAGGGAUUGUGGUGAGUaAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUGcGUUAGU......................................................... len:22 al:9
......................UCAGGGAUUGUGGUGAGUcAGUU........................................................ len:23 al:91
......................UCAGGGuUUGUGGUGAGUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGAGUUuGUU........................................................ len:23 al:26
......................UCAGGGAUUGUGGUaAGUUAGUUGU...................................................... len:25 al:2
......................UCAaGGAUUGUGGUGAGUUAGU......................................................... len:22 al:18
......................UCgGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:15
......................UuAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:4
......................UCAGGGAUUuUGGUGAGUUAGUU........................................................ len:23 al:8
......................UCAGGaAUUGUGGUGAGUU............................................................ len:19 al:4
......................UCAGGGAUUGaGGUGAGUUAGUU........................................................ len:23 al:29
......................UCAGGGAUUGUGGaGAGUUAGUU........................................................ len:23 al:8
......................UCAGGGAUUGUGaUGAGUUAGU......................................................... len:22 al:16
......................UCAGGGAUUGUGGUGAGUUAGa......................................................... len:22 al:179
......................UCAGGGAUUGUGGUGAGUcA........................................................... len:20 al:3
......................UCAGGGAUUGUGGUGAGUUgGU......................................................... len:22 al:412
......................UCAGGGAUUGUcGUGAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGcGAGUUAGUU........................................................ len:23 al:192
......................UCAGGGAUUGcGGUGAGUU............................................................ len:19 al:27
......................UCcGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:45
......................UCAGGGAUcGUGGUGAGUUA........................................................... len:20 al:4
......................aCAGGGAUUGUGGUGAGUU............................................................ len:19 al:40
......................UCAGGGAUUGUGGUGAGUUAGUc........................................................ len:23 al:5361
......................UCAGGGAUUGUGGUGAGUUAcUU........................................................ len:23 al:4
......................UgAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:2
......................UuAGGGAUUGUGGUGAGU............................................................. len:18 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUcUU..................................................... len:26 al:1
......................UCAGGGAUUGUGGUGAaU............................................................. len:18 al:29
......................UCAGGGAUUGUGGUGAGUUcG.......................................................... len:21 al:3
......................UCAGGGAUUGUGGUGAGUUgG.......................................................... len:21 al:142
......................UCAGGGAUUGUGGUGAGUUAGUUa....................................................... len:24 al:2102
......................UCAGGGAUUGUGGUGAGUUAGUUGUUUUA.................................................. len:29 al:1
......................aCAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:11
......................UCAGGGAUUGUaGUGAGUUA........................................................... len:20 al:1
......................UCAGGGAcUGUGGUGAGUUAGU......................................................... len:22 al:61
......................UCAGGGAUUGUGGaGAGUU............................................................ len:19 al:5
......................UCAGGGAUUGUGGUGAGUU............................................................ len:19 al:13712
......................UCAGGGAUUGUGGUGAGUUAuUU........................................................ len:23 al:11
......................UCgGGGAUUGUGGUGAGU............................................................. len:18 al:3
......................UCAGGGAUUGUGGUGAGUUAGg......................................................... len:22 al:106
......................UCAGGGAUUGUGGUGAGcUA........................................................... len:20 al:1
......................cCAGGGAUUGUGGUGA............................................................... len:16 al:1
......................aCAGGGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAGGGAgUGUGGUGAGUUAGUU........................................................ len:23 al:9
......................UCAGGGAUaGUGGUGAGUUAGUUG....................................................... len:24 al:1
......................UCAGGGAUUGUGGUGAGg............................................................. len:18 al:11
......................UCAGGGAUUGUGGUGAGUUAu.......................................................... len:21 al:48
......................UCAGGaAUUGUGGUGAGUUAG.......................................................... len:21 al:6
......................UCAGGGAUUGUGGUGAu.............................................................. len:17 al:5
......................UCAGGaAUUGUGGUGAGU............................................................. len:18 al:2
......................gCAGGGAUUGUGGUGAGU............................................................. len:18 al:1
......................UCAGGGAUUGUGGUGAGUUAGaU........................................................ len:23 al:227
......................UCAGGGAUUGUaGUGAGUU............................................................ len:19 al:12
......................UCAGGGAUUGgGGUGAGUU............................................................ len:19 al:3
......................UCAGGGAUUGUGGUGAGUUcGUUGUUUU................................................... len:28 al:1
......................UCAGGGAUUGUaGUGAGUUAGUU........................................................ len:23 al:40
......................UCAGuGAUUGUGGUGAGU............................................................. len:18 al:3
......................UCAGGGAUUGUGGUGAGcUAGUU........................................................ len:23 al:160
......................cCAGGGAUUGUGGUGAGUU............................................................ len:19 al:50
......................UuAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:20
......................UCAGGGAUUGUGGUGAGgU............................................................ len:19 al:234
......................UCAGGGAUUuUGGUGAGUUAGU......................................................... len:22 al:4
......................UCAGGGAUUaUGGUGAGUUAGUU........................................................ len:23 al:45
......................UCAGGGAUcGUGGUG................................................................ len:15 al:1
......................cCAGGGAUUGUGGUGAGU............................................................. len:18 al:11
......................UCAGGcAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGUUAGUa........................................................ len:23 al:746
......................UCAGGGAUUGUGGUGAGUUAGUUGUUUU................................................... len:28 al:3
......................UCAGGGAUUGUGGUGAGUUg........................................................... len:20 al:14
......................UCAGGGAUUGUGGUGAGUUAGUUGaU..................................................... len:26 al:1
......................UCcGGGAUUGUGGUGAGUU............................................................ len:19 al:10
......................UCAGuGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAGGGAUUGUGGUGAGUg............................................................ len:19 al:37
......................UCAGGGAUUGUuGUGAGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGaGAGUUAGU......................................................... len:22 al:9
......................UCAGGGAUUGUGGUGAGa............................................................. len:18 al:67
......................UCAGaGAUUGUGGUGAGUUAG.......................................................... len:21 al:5
......................UCAGGGAUUGUGGcGAGUUA........................................................... len:20 al:3
......................UCAcGGAUUGUGGUGAGU............................................................. len:18 al:1
......................UCAGGGgUUGUGGUGAGUUAG.......................................................... len:21 al:22
......................UCAGGGAUUGUaGUGAGUUAG.......................................................... len:21 al:7
......................UCAGGGAUUGUGGUGAGUUuGU......................................................... len:22 al:603
......................UaAGGGAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGaUAGUU........................................................ len:23 al:9
......................UCAGGGAUUGUGGUG................................................................ len:15 al:80
......................UCAGGGAUUGUGGaGAGUUAG.......................................................... len:21 al:2
......................UCAGcGAUUGUGGUGAGUUAGU......................................................... len:22 al:1
......................UCAGcGAUUGUGGUGAGUUAGUU........................................................ len:23 al:2
......................UCAGGGAUUGUGGUGAGcU............................................................ len:19 al:46
......................UCAGGGAUUGUGGUGAcUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGAuUUAGU......................................................... len:22 al:2
......................UCAGGGcUUGUGGUGAGUUAGUU........................................................ len:23 al:65
......................UCAaGGAUUGUGGUGAGUUAG.......................................................... len:21 al:3
......................UCAGGGAUUGUuGUGAGUUAGUU........................................................ len:23 al:9
......................UCAGGGAUUGUGGUGAuUUAGUU........................................................ len:23 al:6
......................UCAGGGAUUaUGGUGAGU............................................................. len:18 al:2
......................UCAGGGAUUuUGGUGAGUU............................................................ len:19 al:3
......................UCAGGuAUUGUGGUGAGUUAGU......................................................... len:22 al:5
......................UCAGGGAUUGUGGUGuGU............................................................. len:18 al:1
......................UCAGGGAUUGUGGUGAG.............................................................. len:17 al:20
......................UCAGGGAUUGUGaUGAGUU............................................................ len:19 al:11
......................UCAGGGgUUGUGGUGAGUUAGUU........................................................ len:23 al:189
......................UCAGGGAUUGcGGUGAGUUAGUU........................................................ len:23 al:195
......................gCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:5
......................UCAGGGAUUGUGGUuAGU............................................................. len:18 al:1
......................UCAGGGAUUGUGGcGAGUU............................................................ len:19 al:28
......................UCAGGGAUUGUGGUGcGUUA........................................................... len:20 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUGUU..................................................... len:26 al:11
......................UCAGGuAUUGUGGUGAGUU............................................................ len:19 al:1
......................aCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:45
......................UCAGGGAUUGUGGUGAaUUA........................................................... len:20 al:1
......................UCAGGGAUUGUGGUGAaUUAGUU........................................................ len:23 al:30
......................UCAGGGAaUGUGGUGAGUUAGU......................................................... len:22 al:3
......................UCAGGGAUUGUGGUGAGc............................................................. len:18 al:183
......................UCAGGGAUcGUGGUGAGUUAGUU........................................................ len:23 al:188
......................UCAGGGAUcGUGGUGAGUUAG.......................................................... len:21 al:17
......................UCAGGGAUUGUGGUGAGUUAGUUGUc..................................................... len:26 al:1
......................UCuGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:24
......................UCAGGGAUUGUGGUGAGUUAa.......................................................... len:21 al:158
......................UCAGGGcUUGUGGUGAGUUAG.......................................................... len:21 al:6
......................UCAGGGAUUGUGGUGAGUUAGUUGa...................................................... len:25 al:10
......................UCAGGGAUUGUGGUGu............................................................... len:16 al:1
......................UCAGGGAUUGUGGUGAGcUAGU......................................................... len:22 al:53
......................UCAaGGAUUGUGGUGAGU............................................................. len:18 al:2
......................UCAGGGAUUGUGGUGuGUUAG.......................................................... len:21 al:5
......................UCcGGGAUUGUGGUGAGUUAGUUGUU..................................................... len:26 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUuU...................................................... len:25 al:124
......................UCAGGGAUUGUGGcGAGUUAG.......................................................... len:21 al:14
......................UCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:28963
......................UCAGGGAUUGUGGcGAGUUAGU......................................................... len:22 al:85
......................UCAGGGAgUGUGGUGAGUUAGU......................................................... len:22 al:2
......................UCAGGGAUcGUGGUGAGU............................................................. len:18 al:10
......................UCAGGGAUUGUGaUGAGU............................................................. len:18 al:2
......................UCgGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:237
......................UCAGGGuUUGUGGUGAGUU............................................................ len:19 al:2
......................cCAGGGAUUGUGGUG................................................................ len:15 al:1
......................gCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:10
......................cCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:309
......................UCAGGGAUUGaGGUGAGUUAGU......................................................... len:22 al:15
......................UCAGGGAUUGaGGUGAGUUAG.......................................................... len:21 al:3
......................UCAGGGAcUGUGGUGAGUUAGUUGU...................................................... len:25 al:1
......................cCAGGGAUUGUGGUGAGUUAGUUG....................................................... len:24 al:1
......................UCAGGGAcUGUGGUGAGUUAG.......................................................... len:21 al:14
......................UCAGuGAUUGUGGUGAGUUAGU......................................................... len:22 al:4
......................UCAGGGAUUGUGGUGAGUUAGUUaUU..................................................... len:26 al:11
......................UCAGGGAUUGcGGUGAGUUAGU......................................................... len:22 al:72
......................UCAGGGcUUGUGGUGA............................................................... len:16 al:1
......................UCAGGGAUUGUGGUGgGU............................................................. len:18 al:15
......................UCAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:6637
......................UCAGGGAUUGUGGUGAGUUgGUUG....................................................... len:24 al:10
......................UCAGGGAUUGUGGUGAGUUcGU......................................................... len:22 al:13
......................UCAGGGAUUGUGGUGcGUUAGUU........................................................ len:23 al:23
......................UCAGGGcUUGUGGUGAGUU............................................................ len:19 al:11
......................UCAGGGAUUGUaGUGAGUUAGU......................................................... len:22 al:24
......................UCAGGGAUUGUGGUGAGUcAG.......................................................... len:21 al:6
......................UCAGGGAUUGUGGaGAGUUA........................................................... len:20 al:1
......................UCAGGGAUUGUGGUGAGUUA........................................................... len:20 al:827
......................UCAGGGuUUGUGGUGAGUUAGUU........................................................ len:23 al:10
......................UCAGGGAUUGUGGUGAuU............................................................. len:18 al:4
......................UCAGGGAUUGUGGUaAGUU............................................................ len:19 al:6
......................UCAaGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:34
......................UCAGGGAUUGUGGgGAGUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGcGUU............................................................ len:19 al:2
......................UCcGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:6
......................UCAGGGcUUGUGGUGAGU............................................................. len:18 al:4
......................UCAGGGAUUGUGGUGAGUcAGU......................................................... len:22 al:37
......................UCAcGGAUUGUGGUGAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGUGg............................................................... len:16 al:1
......................UCAGGGAUUGUGGUu................................................................ len:15 al:1
......................UCgGGGAUUGUGGUGAGUUAGUUGUU..................................................... len:26 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUu....................................................... len:24 al:2961
......................UCgGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:119
......................UCAGGGAUUGUGGUGA............................................................... len:16 al:43
......................UCAGGGAUUGUcGUGAGUUAGUU........................................................ len:23 al:3
......................UCAGGGAUUGUGGUGAGUc............................................................ len:19 al:942
......................UCAGGGAUUGUGGUGuGUUAGUU........................................................ len:23 al:35
......................UCAGaGAUUGUGGUGAGUU............................................................ len:19 al:3
......................UCAGGGAUUGUGGUaAGUUAGU......................................................... len:22 al:10
......................UCAGaGAUUGUGGUGAGUUAGUU........................................................ len:23 al:34
......................UCAGGGAUUGUGGUGAGaU............................................................ len:19 al:92
......................UCAGGGAUUuUGGUGAGU............................................................. len:18 al:2
......................UCAGGGAUUGUGGUGcGUUAG.......................................................... len:21 al:1
......................aCAGGGAUUGUGGUGAGU............................................................. len:18 al:7
......................UCAGGGAUUGUGGUGgGUUAGUUGUUUU................................................... len:28 al:1
......................UCAGGGAUaGUGGUGAGUU............................................................ len:19 al:5
......................UCAGGuAUUGUGGUGAGUUAGUU........................................................ len:23 al:8
......................UCAGGGAUaGUGGUGAGUUAGU......................................................... len:22 al:3
......................UuAGGGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAGGGAUUGaGGUGAGUU............................................................ len:19 al:6
......................UCAGGGAUUuUGGUGAGUUAG.......................................................... len:21 al:2
......................UCAGGGAgUGUGGUGAGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUGg...................................................... len:25 al:1
......................UCAGGGAUUGUGGUGAGUaAGUU........................................................ len:23 al:6
......................UCAGaGAUUGUGGUGAGUUAGU......................................................... len:22 al:9
......................UCAGGGAUUGUGGUGAGU............................................................. len:18 al:2550
......................UCAGGGAUUGUGGUGAGUUAaU......................................................... len:22 al:101
......................UCAGGGAUUGUGGgGAGUUAGUU........................................................ len:23 al:11
......................UCAGGGAUUGUGGUGAGUUAGUUGUUUUAU................................................. len:30 al:2
......................UCAGGGgUUGUGGUGAGUUAGU......................................................... len:22 al:74
......................UuAGGGAUUGUGGUGAGUU............................................................ len:19 al:10
......................UCAGGGAUUGUGGUGgGUU............................................................ len:19 al:57
......................UCAGGGAUUGUGGUGcGU............................................................. len:18 al:2
......................UCAGGGAUgGUGGUGAGUUAGUU........................................................ len:23 al:6
......................UCAGGGAUUGcGGUGAGUUAG.......................................................... len:21 al:18
......................UCAGGGAUUGcGGUGAGUUA........................................................... len:20 al:4
......................UCAGGGAUaGUGGUGAGUUAGUU........................................................ len:23 al:12
......................UCAGGGAUUGUGGUGAGUUAuU......................................................... len:22 al:7
......................UCAGGGAUUGUaGUGAGU............................................................. len:18 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUGgU..................................................... len:26 al:1
......................UCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:69916
......................UCAGGGAUUGUGGUGgGUUA........................................................... len:20 al:8
......................UCAGGGAUUGUGGUGAGaUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUGUUU.................................................... len:27 al:3
......................UCuGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:2
......................UCAGGGAUUGUGGUGAGUUcGUU........................................................ len:23 al:40
......................UgAGGGAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUc....................................................... len:24 al:163
......................UCAGGGAUUGUGGUGAGUaAGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUG....................................................... len:24 al:181
......................UCAGGGAUUGUGGUuAGUUAGUU........................................................ len:23 al:5
......................UCAGuGAUUGUGGUGAGUUAGUU........................................................ len:23 al:15
......................UCAGGGAUUGUGGUGAGaUAGU......................................................... len:22 al:3
......................UCAGGGAUUGUGaUGAGUUAG.......................................................... len:21 al:11
......................UCAGGaAUUGUGGUGAGUUAGUU........................................................ len:23 al:40
......................UCAGGGAgUGUGGUGAGUU............................................................ len:19 al:5
......................UCcGGGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAuGGAUUGUGGUGAGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUGAGUUgGUU........................................................ len:23 al:4027
......................UCAGGGAUUGcGGUGAGUUAGUUGUUUUA.................................................. len:29 al:2
......................UCAGGGcUUGUGGUGAGUUAGU......................................................... len:22 al:31
......................UCAGGGAUUGUGGUGAGUgAGU......................................................... len:22 al:4
......................UCAGGGAUUGUGGUGAaUUAGU......................................................... len:22 al:13
......................UCAGGGAUUGUGcUGAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGUGAGgUAGUU........................................................ len:23 al:6
......................UCAGGGAUUGUGGcGA............................................................... len:16 al:1
......................UCAGGGAUUGUGGUGAGUgAGUU........................................................ len:23 al:11
......................UCAGaGAUUGUGGUGAGU............................................................. len:18 al:5
......................UCAGGGAUUGUGcUGAGUUAGUU........................................................ len:23 al:1
......................UCAGGGAUUaUGGUGAGUU............................................................ len:19 al:8
......................UCcGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:18
......................UCAGGGAUUGUuGUGAGU............................................................. len:18 al:2
......................UCAGGGAUUGUGGUGAGUUu........................................................... len:20 al:13
......................UCAGGGAUUGgGGUGAGUUAG.......................................................... len:21 al:2
......................UCAGGGAUcGUGGUGAGUU............................................................ len:19 al:47
......................UCAGGGAUUGUGGUGAGUUAGUUuUU..................................................... len:26 al:18
......................UCAGGGAUUGUGGUaAGUUAG.......................................................... len:21 al:4
......................UCAGGGAUUGUGuUGAGUUAG.......................................................... len:21 al:7
......................UaAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGUGAGUgA........................................................... len:20 al:3
......................aCAGGGAUUGUGGUGAGUUAGUUG....................................................... len:24 al:1
......................UCAGGGgUUGUGGUGAGU............................................................. len:18 al:11
......................UCAGGGAcUGUGGUGAGU............................................................. len:18 al:4
......................UCAGGGAUcGUGGUGAGUUAGU......................................................... len:22 al:76
......................UCAGGGAUUGUGGUGAGUUAGc......................................................... len:22 al:2133
......................cCAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:24
......................UCAGGcAUUGUGGUGAGUUAGUU........................................................ len:23 al:3
......................UCAGGGAUUGcGGUGAGU............................................................. len:18 al:10
......................UCAGGGAUUGUGGUGAGUUAGUUGUUaU................................................... len:28 al:1
......................UCAGGGAUUGUGGUGuGUUAGU......................................................... len:22 al:9
......................UCAuGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:10
......................UCuGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:49
......................UCAGGGAUUGUGGcGAGU............................................................. len:18 al:9
......................UCAGGGAUUGUGGUGAGUUc........................................................... len:20 al:1
......................UCAGGGAUUGUGuUGAGUUAGUU........................................................ len:23 al:11
......................UCAGGGAcUGUGGUGAGUU............................................................ len:19 al:22
......................UCAGGGAcUGUGGUGAGUUAGUU........................................................ len:23 al:151
......................UCAGGGAUUGUGGUGuGUU............................................................ len:19 al:4
......................UCAGGGAaUGUGGUGAGUUAGUU........................................................ len:23 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUGU...................................................... len:25 al:39
......................UCAGGGAUUGUGGUGAGgUAGU......................................................... len:22 al:2
......................UCgGGGAUUGUGGUGAGUUA........................................................... len:20 al:2
......................UCAGGGAUUGUGGUGAcU............................................................. len:18 al:1
......................aCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:192
......................UCAGGGAUUGUGGUGAGUUAGUcG....................................................... len:24 al:2
......................UCAGGGAUUGUGGUGAGcUAG.......................................................... len:21 al:11
......................UCAGGGAUUGUGGUGgGUUAGU......................................................... len:22 al:122
......................UCAGuGAUUGUGGUGAGUU............................................................ len:19 al:2
......................UCAGGGgUUGUGGUGAGUU............................................................ len:19 al:33
......................UCAGGGAUUGUGGUGAGUUAGUUaU...................................................... len:25 al:90
......................UCAGGGAUUGUGuUGAGUUAGU......................................................... len:22 al:9
......................UCAGGGAUUGUGGUGAGUUAaUU........................................................ len:23 al:10
......................UCAGGGAUUGgGGUGAGUUAGUU........................................................ len:23 al:5
......................UCAGGGAUUGUGGUGAGUUAGUg........................................................ len:23 al:162
......................UCAGGGAUUGUGGUGAaUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUuAGUU............................................................ len:19 al:1
......................UCAGGGAUcGUGGUGAGUUAGUUG....................................................... len:24 al:1
......................UCAGGGAUUGUGGUGAGUUAGcU........................................................ len:23 al:224
......................UCAGGGAUUGUGGUGAGUUAcU......................................................... len:22 al:10
......................UCAGGGAUUGUGGUGAGUa............................................................ len:19 al:142
......................UCAGGGAUUGUuGUGAGUUAGU......................................................... len:22 al:4
......................gCAGGGAUUGUGGUGAGUU............................................................ len:19 al:1
......................cCAGGGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAGGaAUUGUGGUGAGUUAGU......................................................... len:22 al:12
......................UCAGGGAUUGUGuUGAGUU............................................................ len:19 al:1
.......................CAGGGAUUGcGGUGAGUUAGUU........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUUgGU......................................................... len:21 al:4
.......................CAGGGAUUGUGGUGAGUU............................................................ len:18 al:24
.......................CAGGGAUUGUGGUGAGUUAGUUu....................................................... len:23 al:4
.......................CAGGGAUUGUGGUGAGaUAGUU........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUUAGUc........................................................ len:22 al:7
.......................CAGGGAUUGUGGUGAGUUA........................................................... len:19 al:4
.......................CAGGGAUUGUGGUGgGUUAGU......................................................... len:21 al:1
.......................CAGGGAUUGUGGUGAGUUAG.......................................................... len:20 al:14
.......................CAGGGAUUGUGGUGAGUUAGUUuUU..................................................... len:25 al:1
.......................CAGGGAUUGUGGUGAGUUAGgU........................................................ len:22 al:1
.......................CAGGGAUUGUGGcGAGUUAGUU........................................................ len:22 al:1
.......................CAGGGgUUGUGGUGAGUU............................................................ len:18 al:1
.......................CAGGGAUUGUGGUGAGUUAGUUaU...................................................... len:24 al:1
.......................CAGGGAUUGUGGUGgGUUAGUU........................................................ len:22 al:2
.......................CAGGGAUUGUGGUGAGUUAGUg........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUUAGc......................................................... len:21 al:4
.......................CAGGGAUUGUGGUGAGUUAGU......................................................... len:21 al:45
.......................CAGGGAUUGUGGUGAGcUAGUU........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUc............................................................ len:18 al:2
.......................CAGGGAUUGUGGUGAGUcAGUU........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUUgGUU........................................................ len:22 al:16
.......................CAGGGAUUGUGGUGAGUUg........................................................... len:19 al:1
.......................CAGGGAUUGUGGUGAGUUAGUU........................................................ len:22 al:120
........................AGGGAUUGUGGUGAGUUAGUUu....................................................... len:22 al:7
........................AGGGAUUGUGGUGAGUU............................................................ len:17 al:3
........................AGGGgUUGUGGUGAGUUAG.......................................................... len:19 al:1
........................AGGGAUUGUGGUGAGUUAGU......................................................... len:20 al:31
........................AGGGAUUGUGGUGAGUUgGU......................................................... len:20 al:2
........................AGGGAUUGUGGUGAGUUAG.......................................................... len:19 al:9
........................AGGGAUUGUGGUGAGUUAGUU........................................................ len:21 al:70
........................AGGGAUUGUGGUGAGUUuGU......................................................... len:20 al:1
........................AaGGAUUGUGGUGAGUUAGUU........................................................ len:21 al:1
........................AGGGAUUGUGGUGAGUUAGUc........................................................ len:21 al:6
........................AGGGAUUGUGGUGAGUUgGUU........................................................ len:21 al:3
........................cGGGAUUGUGGUGAGUUAGUUGU...................................................... len:23 al:1
........................AGGGAUUGUGGUGAGUUAGgU........................................................ len:21 al:1
........................AGGGAUUGUGGUGAGUUA........................................................... len:18 al:1
........................AGGGgUUGUGGUGAGUUAGUU........................................................ len:21 al:1
........................AGGGAUUGUGGUGAGUUAGUUG....................................................... len:22 al:1
........................AGGGAUUGUGGUGAGUUu........................................................... len:18 al:1
........................AGGGAcUGUGGUGAGUUAGUU........................................................ len:21 al:2
........................AGGGAUUGUGGUGAGUUAGUUa....................................................... len:22 al:1
........................AGGGAUUGUGGUGAGUUAGUUGU...................................................... len:23 al:16
.........................GGGAUUGUGGUGAGUUAGUU........................................................ len:20 al:24
.........................GGGAUUGUGGUGAGUUAGUUuU...................................................... len:22 al:1
.........................GGGAUUGUGGUGAGUUgGUU........................................................ len:20 al:4
.........................GGGAUUGUGGUGAGUUAGUUu....................................................... len:21 al:2
.........................GGGAUUGUGGUGAGUUAGU......................................................... len:19 al:13
.........................GGGAUUGUGGUGAGUUAGUUa....................................................... len:21 al:1
.........................GGGAUUGUGGUGAGUUAG.......................................................... len:18 al:1
.........................GGGgUUGUGGUGAGUUAGUU........................................................ len:20 al:1
.........................GGGAUUGUGGUGAGUU............................................................ len:16 al:1
.........................GGGAUUGUGGUGAGUUAGUUGU...................................................... len:22 al:1
..........................GGAUUGUGGUGAGUUAGU......................................................... len:18 al:2
..........................GGAUUGUGGUGAGUUgGUU........................................................ len:19 al:1
...........................GAUUGUGGUGAGUUAGUUGUUUUAUUUGCA............................................ len:30 al:1
...........................GAUUGUGGUGAGUUAGUU........................................................ len:18 al:1
............................AUUGUGGUGAGUUAGUUu....................................................... len:18 al:2
............................AUUGUGGUGAGUUAGUUGUUU.................................................... len:21 al:1
............................AUUGUGGUGAGUUAGUUGUUUU................................................... len:22 al:1
............................AUUGUGGUGAGUUAGUUGUU..................................................... len:20 al:3
.............................UUGUGGUGAGUUAGUUGUUUa................................................... len:21 al:5
..............................UGUGGUGAGUUAGUUGUUUUAUUUGCA............................................ len:27 al:1
..............................UGUGGUGAGUUAGUUGUUUUAUUUGC............................................. len:26 al:1
..................................GUGAGUUAGUUGUUUUAUUUGCA............................................ len:23 al:2
.........................................................ACCAGCUCAUAUCAGUACCUGCUA.................... len:24 al:1
.........................................................ACCAGCUCAUAUCAGUACCUGCU..................... len:23 al:1
..........................................................CCAGCUCAUAUCAGUACCUGCcA.................... len:23 al:2
..........................................................CCAGCUCAUAUCAGUACCUG....................... len:20 al:3
..........................................................CCAGCUCAUAUCAGUACuUGCUA.................... len:23 al:1
..........................................................CCAGCUCAUAUCAGUACC......................... len:18 al:1
..........................................................CCAGCUCAUAUCAGUACCUGCUu.................... len:23 al:5
..........................................................CCAGCUCAUAUCAGUACCUGCa..................... len:22 al:5
..........................................................CCAGCUCAUAUCAGUACCUGCUAuA.................. len:25 al:2
..........................................................aCAGCUCAUAUCAGUACCUGCUA.................... len:23 al:1
..........................................................CCAGCUCAUAUCAGUACCU........................ len:19 al:1
..........................................................CCAGCUCAUAUCAGUACCUGC...................... len:21 al:5
..........................................................CCAGCUCAUAUCAGUACCUGCU..................... len:22 al:14
..........................................................CCAGCUCAUAUCAGUACCcGC...................... len:21 al:1
..........................................................CCAGCUCAUAUCAGUACCUGCUAu................... len:24 al:7
..........................................................CCAGCUCAUAUCAGUACCUGCc..................... len:22 al:3
..........................................................CCAGCUCAUAUCAGUACCUGCUA.................... len:23 al:103
..........................................................CCAGCUCAUAUCAGUACCUGu...................... len:21 al:1
...........................................................CAGCUCAUAUCAGUACCUGCUA.................... len:22 al:1
............................................................AGCUCAUAUCAGUACCUG....................... len:18 al:1
............................................................AGCUCAUAUCAGUACCUGC...................... len:19 al:1
.............................................................GCUCAUAUCAGUACCUGCUAgAAUUUGAAU.......... len:30 al:1
..................................................................UAUCAGUACCUGCUAAAAUUUGAAUA......... len:26 al:1
.....................................................................CAGUACCUGCUAAAAUUUGAAUAAAUAUU... len:29 al:4
.......................................................................GUACCUGCUAAAAUUUGAAUA......... len:21 al:1
.......................................................................GUACCUGCUAAAAUUUGAAUAAAUAUU... len:27 al:1