Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000005:601572-601666 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1827.ps.pdf
Locus Name: Cluster_1827
UAUUCUUGGGAUACUCGUCUCUGCCACUCGUAUUUUCUUUCACGUUUAUCGAUGAAAGAAGUACAAGUGGUAGGGAGGGGGUGUCACCAAUUCGC
.....(((((((((((.(((((((((((.((((((.((((((((.....)).)))))))))))).)))))))))))..))))))).))))..... (-45.00)
cAUUCUUGGGAUACUCGUCU........................................................................... len:20 al:4
UAUUCUUGGGAUACUCGUCg........................................................................... len:20 al:9
UAUcCUUGGGAUACUCGUCU........................................................................... len:20 al:4
UAUUCUUGGGAUACcCGUCU........................................................................... len:20 al:5
UAUUCUUGGGAUACUCGUgU........................................................................... len:20 al:3
UAUUCcUGGGAUACUCGUCU........................................................................... len:20 al:1
UAUUCUUGGGAcACUCGUCU........................................................................... len:20 al:4
UAUUCUUGGGAUACUCGUCU........................................................................... len:20 al:952
UAUUCUUGGGAUACUuGUCU........................................................................... len:20 al:1
UAUUCUUGaGAUACUCGUCU........................................................................... len:20 al:1
UAUUCUUGGGAUACUCGUCc........................................................................... len:20 al:113
UAUUCUUGGGAUACUCGUaU........................................................................... len:20 al:9
UAUUCUUGGGAUACUCGUCUaU......................................................................... len:22 al:2
UAUUCUUGGGAUACUCGcCU........................................................................... len:20 al:1
UAUUCUUaGGAUACUCGUCU........................................................................... len:20 al:1
UAUUCaUGGGAUACUCGUCU........................................................................... len:20 al:1
UAUUCUUGGGAUACUCGUuU........................................................................... len:20 al:1
UcUUCUUGGGAUACUCGUCU........................................................................... len:20 al:1
UAUUCUUGGaAUACUCGUCU........................................................................... len:20 al:1
UAUUCUUGGGAUcCUCGUCU........................................................................... len:20 al:2
UAUUCUUGGGAUACUCGUC............................................................................ len:19 al:8
UgUUCUUGGGAUACUCGUC............................................................................ len:19 al:2
UAUUCUUGGGcUACUCGUCU........................................................................... len:20 al:1
UgUUCUUGGGAUACUCGUCU........................................................................... len:20 al:186
UAUUCUUGGGAUgCUCGUCU........................................................................... len:20 al:1
UAUUCUcGGGAUACUCGUCU........................................................................... len:20 al:3
UAUUCUUGGGAUACUCGUCa........................................................................... len:20 al:33
UAUUCUUGGGAUAuUCGUCU........................................................................... len:20 al:1
UAcUCUUGGGAUACUCGUCU........................................................................... len:20 al:4
UAUUCUUGGGgUACUCGUCU........................................................................... len:20 al:4
aAUUCUUGGGAUACUCGUCU........................................................................... len:20 al:3
.AUUCUUuGGAUACUCGUCU........................................................................... len:19 al:1
.AUUCUUGGGAUACUCaUC............................................................................ len:18 al:1
.AUUCUUGGGAUcCUCGUCU........................................................................... len:19 al:2
.AUUCUUGGGAUACaCGUCU........................................................................... len:19 al:1
.gUUCUUGGGAUACUCGUC............................................................................ len:18 al:1
.AUUCUUGGGAUACUCGUC............................................................................ len:18 al:3
.AUcCUUGGGAUACUCGUCU........................................................................... len:19 al:1
.AcUCUUGGGAUACUCGUCU........................................................................... len:19 al:1
.AUUCUUGGGAUACUCGUaU........................................................................... len:19 al:2
.AUUCUUaGGAUACUCGUCU........................................................................... len:19 al:1
.cUUCUUGGGAUACUCGUCU........................................................................... len:19 al:3
.gUUCUUGGGAUACUCGUCU........................................................................... len:19 al:74
.AUUCUUGGGAUACUCGUCc........................................................................... len:19 al:49
.AUUCUUGGGAUACUCGUCg........................................................................... len:19 al:5
.AUUCUUGGaAUACUCGUCU........................................................................... len:19 al:1
.AUUCUUGGGAUgCUCGUCU........................................................................... len:19 al:1
.AUUCUUGGGAUACUCGUCa........................................................................... len:19 al:18
.AUUCUUGGGAUACUCGUCU........................................................................... len:19 al:462
..UaCUUGGGAUACUCGUCU........................................................................... len:18 al:1
..UUCUUGGGAUACUCGUCc........................................................................... len:18 al:8
..UUCUUGGGAcACUCGUCU........................................................................... len:18 al:2
..UUCUUGGGAUACgCGUCU........................................................................... len:18 al:1
..UUCUUGGGAUACUCGUCU........................................................................... len:18 al:85
..UUCUUGGGAUACUCGUCa........................................................................... len:18 al:2
...UCUUGGGAUACUCGUCUCUGCu...................................................................... len:22 al:3
...UCUUGGGAUACUCGUCUCUGCC...................................................................... len:22 al:1
...UCUUGGGAUACUCGUCU........................................................................... len:17 al:2
....CUUGGGAUACUCGUCU........................................................................... len:16 al:1
....CUUGGGAUACUCGUCUCUGu....................................................................... len:20 al:1
...................UCUGCCACUCGUAUUUUCUUU....................................................... len:21 al:4
...................UCUGCCACUCGUAUUUUCUUUCA..................................................... len:23 al:10
...................UCUGCCACUuGUAUUUUCUUUCA..................................................... len:23 al:1
...................UCUGCCACUCGUAUUUUCUUUCu..................................................... len:23 al:4
...................UCUGCCACUCGUAUUUUCUUUC...................................................... len:22 al:6
....................CUGCCACUCGUAUUUaCUUUC...................................................... len:21 al:1
....................CUGCCACUCGUAUUUUCUUUu...................................................... len:21 al:13
....................CUGCCACUCGUAUUUUCUUUaA..................................................... len:22 al:1
....................CUGCCACUCGUAUUUUCUUUC...................................................... len:21 al:640
....................CUGCCACUCGUAUUUUCUcUCA..................................................... len:22 al:1
....................CUGCCgCUCGUAUUUUCUUUC...................................................... len:21 al:2
....................CUGCCACUCGUAUUUUCUU........................................................ len:19 al:20
....................CUGCCACUCGUAUUUUCUaU....................................................... len:20 al:2
....................CUGCCACUCGUAcUUUCUUUC...................................................... len:21 al:2
....................CUGCCACUCGUAUUUUCUUcCA..................................................... len:22 al:2
....................CUGuCACUCGUAUUUUCUUUC...................................................... len:21 al:3
....................CUGCCACUCGUAUUUUCUUUCACGUUUAUC............................................. len:30 al:1
....................CUGCCACcCGUAUUUUCUUU....................................................... len:20 al:3
....................CUGCCgCUCGUAUUUUCUUUCA..................................................... len:22 al:3
....................CUGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:1517
....................CUGCCACUCGUAUcUUCUUUCA..................................................... len:22 al:5
....................CUGuCACUCGUAUUUUCUUUCA..................................................... len:22 al:2
....................CcGCCACUCGUAUUUUCUUUC...................................................... len:21 al:4
....................CUGCCACUCGUAUUUUCUUUCAu.................................................... len:23 al:6
....................CUGCCACUCGUAUUUcCUUUCA..................................................... len:22 al:4
....................CUGCCACUCGUAUUUUCUUUa...................................................... len:21 al:11
....................CUGCCACUCGUAUUUUCUUUCAC.................................................... len:23 al:5
....................CUGCCACcCGUAUUUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUAUUUUCUUUCAa.................................................... len:23 al:2
....................CUGCCACUCGUAUUUaCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUcUCUUUC...................................................... len:21 al:1
....................CUGCCACUCGUAUUUUCUUUCACGU.................................................. len:25 al:1
....................CUGCCACUCGUAUUUUCU......................................................... len:18 al:17
....................CUGCCACUCGUAUUUUCUUaC...................................................... len:21 al:2
....................CUGCCACUCGUAUUUUCUUUCg..................................................... len:22 al:13
....................uUGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:5
....................CaGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:3
....................CUGCCACUuGUAUUUUCUUUC...................................................... len:21 al:27
....................CUGCCACUCGcAUUUUCUUUC...................................................... len:21 al:1
....................CUGCCACUCGUAUUcUCUUUCA..................................................... len:22 al:5
....................CUGCCACUuGUAUUUUCUUUCA..................................................... len:22 al:792
....................CUGCCAaUCGUAUUUUCUUUC...................................................... len:21 al:1
....................CUGCCACcCGUAUUUUCUUUC...................................................... len:21 al:3
....................CUGCCACUCGUAUUUUCUUUCu..................................................... len:22 al:105
....................CUaCCACUCGUAUUUUCUUU....................................................... len:20 al:1
....................CUGCCACUCGUAUUUUCc......................................................... len:18 al:2
....................CUGCCACUCGUAUUUUCcUUC...................................................... len:21 al:3
....................CUGCCACUCGUAUUUUCUUUCACG................................................... len:24 al:4
....................CUGCCACUCGUAUUUUCUUUCc..................................................... len:22 al:8
....................CUGCCACUuGUAUUUUCUUU....................................................... len:20 al:11
....................CUGCCACUCGUAUUUUCUUa....................................................... len:20 al:2
....................CUGCCACUCaUAUUUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUAUUUUCUUc....................................................... len:20 al:8
....................CUGCCACUCGUAUUUUCUUUCACGUUUAUCa............................................ len:31 al:1
....................CUuCCACUCGUAUUUUCUUUCA..................................................... len:22 al:1
....................CgGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUcUUCUUUC...................................................... len:21 al:4
....................CUGCCACUCGUcUUUUCUUUCA..................................................... len:22 al:3
....................CUGCCACUCGUAUcUUCUUU....................................................... len:20 al:1
....................CUGCCACUCGUAUUUUCUUU....................................................... len:20 al:219
....................CUGCCACUCGcAUUUUCUUUCA..................................................... len:22 al:1
....................CcGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUcUUUUCUUUC...................................................... len:21 al:1
....................CUGCCACUCGUAUUUcCUUUC...................................................... len:21 al:1
....................CUGCCACUCGUAUUUUCcUUCA..................................................... len:22 al:4
....................CUGCCACUCGUAUUUUCUUUg...................................................... len:21 al:2
....................CUGCCACUCGUAcUUUCUUUCA..................................................... len:22 al:3
....................CUGCCACUCGUgUUUUCUUUCA..................................................... len:22 al:3
....................CUGCCACUCGUAUUUUCUUUCAaG................................................... len:24 al:2
....................CUGCCACUuGUAUUUUCU......................................................... len:18 al:2
....................CUGCCACUCGUAUUUUCUUUCACGUUUAUCG............................................ len:31 al:2
....................CUGCCACUCGgAUUUUCUUUCA..................................................... len:22 al:1
.....................UGCCACUCGUAUUUUCUUU....................................................... len:19 al:3
.....................UGCCACUCGUAUUUUCUUUC...................................................... len:20 al:4
.....................UGCCACUuGUAUUUUCUUUC...................................................... len:20 al:2
.....................UGCCACUCGUAUUUUCUUUCA..................................................... len:21 al:5
.....................UGCCACUuGUAUUUUCUUUCA..................................................... len:21 al:1
.....................cGCCACUCGUAUUUUCUUU....................................................... len:19 al:1
......................GCCACUCGUAUUUUCUUUCc..................................................... len:20 al:2
......................GCCACUCGUAUUUUCUUU....................................................... len:18 al:3
...............................AUUUUCUUUCACGUUUAUC............................................. len:19 al:1
........................................CACGUUUAUCGAUGAAAGAAGUACAAGUGGU........................ len:31 al:1
..........................................CGUUUAUCGAUGAAAGAAGUACA.............................. len:23 al:2
..........................................CGUUUAUCGAUGAAAGAAGUACAAGc........................... len:26 al:1
..........................................CGUUUAUCGAUGAAAGAAGUACAAGU........................... len:26 al:4
..........................................CGUUUAUCGAUGAAAGAAGUACAAGUGGUA....................... len:30 al:5
..........................................CGUUUAUCGAUGAAAGAAGUAC............................... len:22 al:1
...........................................GUUUAUCGAUGAAAGAAGUACA.............................. len:22 al:1
...........................................GUUUAUCGAUGAAAGAAGUACAAGU........................... len:25 al:1
............................................UUUAUCGAUGAAAGAAGUACAAGUGGU........................ len:27 al:1
...............................................AUCGAUGAAAGAAGUACAAGUGGUAGGG.................... len:28 al:1
................................................UCGAUGAAAGAAGUACAAGUGGUAG...................... len:25 al:1
.................................................CGAUGAAAGAAGUACAAGUGGUAGGG.................... len:26 al:1
.................................................CGAUcAAAGAAGUACAAGUGGUAG...................... len:24 al:1
..................................................GAUGAAAGAAGUACAAGUGGUAGGu.................... len:25 al:1
..................................................GAUGAAAGAAGUACAAGUGGUAGGG.................... len:25 al:4
...................................................AUcAAAGAAGUACAAGUGGUAGGG.................... len:24 al:1
...................................................AUGAAAGAAGUACAAGUGGUAGGG.................... len:24 al:2
...................................................AUGAAAGAAGUACAAGUGGUA....................... len:21 al:1
....................................................UGAAAGAAGUACAAGUGGUAGa..................... len:22 al:1
....................................................UcAAAGAAGUACAAGUGGUAGG..................... len:22 al:1
....................................................UGAAAGAAGUACAAGUGGUAGGa.................... len:23 al:1
....................................................UGAAAGAAGUACAAGUGGUAGGG.................... len:23 al:5
....................................................UcAAAGAAGUACAAGUGGUAGGG.................... len:23 al:3
....................................................UcAAAGAAGUACAAGUGGU........................ len:19 al:1
....................................................UGgAAGAAGUACAAGUGGUAGGG.................... len:23 al:2
.....................................................cAAAGAAGUACAAGUGGUAGG..................... len:21 al:1
.....................................................GAAAGAAGUACAAGUGGUAGGu.................... len:22 al:2
.....................................................GAAAGAAGUACAAGUGGUAGGa.................... len:22 al:1
.....................................................GAAAGAAGUACAAGUGGUAGGG.................... len:22 al:16
.....................................................cAAAGAAGUACAAGUGGUAGGG.................... len:22 al:11
.....................................................GAAAGAAGUACAAGUGGU........................ len:18 al:1
.....................................................GAAAGAAGUACAAGUaGUAGGG.................... len:22 al:1
.....................................................aAAAGAAGUACAAGUGGUAGGG.................... len:22 al:1
.....................................................cAAAGAAGUACAAGUGGUAG...................... len:20 al:4
......................................................AAAGAAGUACAAGUGuUAGGG.................... len:21 al:11
......................................................AAAGAAGUACcAGUGGUAGGG.................... len:21 al:49
......................................................AAAGAAGUACAAGUGGUuGG..................... len:20 al:6
......................................................AAAGAuGUACAAGUGGUAGGG.................... len:21 al:15
......................................................AAAGAAGUACAAGaGGUAG...................... len:19 al:7
......................................................AAAGAAGUACAAGUuGUAGGGA................... len:22 al:1
......................................................AAAGAAuUACAAGUGGUAGGG.................... len:21 al:15
......................................................AAAGcAGUACAAGUGGUA....................... len:18 al:3
......................................................AAAGgAGUACAAGUGGUAGG..................... len:20 al:38
......................................................AgAGAAGUACAAGUGGUA....................... len:18 al:11
......................................................AAAGAAGUACAAGUGGUAuGG.................... len:21 al:18
......................................................AAAGAcGUACAAGUGGUAGGG.................... len:21 al:83
......................................................AAAGAAGUACAAGUGcUAG...................... len:19 al:2
......................................................AAAGAAGUACcAGUGGUAGG..................... len:20 al:3
......................................................AAAGAAGUACAAGUcGUAGGG.................... len:21 al:1
......................................................AAAGAAGUACAAGUGGUA....................... len:18 al:2019
......................................................AAAGcAGUACAAGUGGUAGG..................... len:20 al:5
......................................................AAAuAAGUACAAGUGGUAGGG.................... len:21 al:4
......................................................AAAGAAGUgCAAGUGGUAGGG.................... len:21 al:173
......................................................AAgGAAGUACAAGUGGUAGGG.................... len:21 al:308
......................................................uAAGAAGUACAAGUGGUAGGG.................... len:21 al:84
......................................................AAAGAAGUACAAGgGGUAGGG.................... len:21 al:10
......................................................AuAGAAGUACAAGUGGUAGG..................... len:20 al:4
......................................................AAAGAAGUACAAGUGGUuGGGA................... len:22 al:2
......................................................AAAGAAGUACAgGUGGUAG...................... len:19 al:54
......................................................AAAGAAGUACAAGUGGUAu...................... len:19 al:353
......................................................AAAGAAcUACAAGUGGUAGGG.................... len:21 al:1
......................................................AAAGAAGUACAgGUGGU........................ len:17 al:1
......................................................AAAGAAGUACAAGUGGUAGaG.................... len:21 al:312
......................................................AAAGAAGcACAAGUGGUAGGG.................... len:21 al:110
......................................................AAAGAAGUACuAGUGGUAG...................... len:19 al:9
......................................................gAAGAAGUACAAGUGGUAGGG.................... len:21 al:331
......................................................AcAGAAGUACAAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAuUACAAGUGGUAG...................... len:19 al:3
......................................................AAAGAAGUACAAGUaGUAG...................... len:19 al:14
......................................................AAAGAAGUACAAGcGGUAGGG.................... len:21 al:168
......................................................AAuGAAGUACAAGUGGUAGGG.................... len:21 al:34
......................................................AAAGgAGUACAAGUGGUAGGG.................... len:21 al:275
......................................................AgAGAAGUACAAGUGGUAGGG.................... len:21 al:338
......................................................AAAGAAGUACAAGUGGUuG...................... len:19 al:10
......................................................AAAGAAGUACAgGUGGUAGGG.................... len:21 al:250
......................................................AAAGAAGUAuAAGUGGUAGGGA................... len:22 al:2
......................................................AAAGAAGUACAgGUGGUA....................... len:18 al:7
......................................................AAAGAAGUACAAGUGGcAGGG.................... len:21 al:159
......................................................AAAGAAGUACuAGUGGU........................ len:17 al:1
......................................................AAAGAAGUACAAGUGGUAGGGAu.................. len:23 al:95
......................................................uAAGAAGUACAAGUGGUAGG..................... len:20 al:5
......................................................AAAGAAGUgCAAGUGGUAGG..................... len:20 al:23
......................................................AAAGAAGUACAAGUGuUAG...................... len:19 al:4
......................................................AAAGAAGUACAAGUGcUAGGG.................... len:21 al:3
......................................................AAAGAAGUACAuGUGGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGU........................ len:17 al:169
......................................................AAAGAAGUACAuGUGGUA....................... len:18 al:1
......................................................AAAGAuGUACAAGUGGUAGG..................... len:20 al:1
......................................................AAAGAuGUACAAGUGGUAG...................... len:19 al:1
......................................................AAAGAAGUACcAGUGGUAG...................... len:19 al:8
......................................................AAAGAAGUACcAGUGGUA....................... len:18 al:1
......................................................AuAGAAGUACAAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUcCAAGUGGUAGGGA................... len:22 al:1
......................................................AgAGAAGUACAAGUGGU........................ len:17 al:1
......................................................AAAGAAGUACAAGUGGaAGG..................... len:20 al:1
......................................................AAAGAAuUACAAGUGGUAGG..................... len:20 al:2
......................................................AAAaAAGUACAAGUGGUAGGG.................... len:21 al:13
......................................................uAAGAAGUACAAGUGGUAG...................... len:19 al:11
......................................................AAAGAcGUACAAGUGGUAG...................... len:19 al:22
......................................................AAAGAAGUACAAGUGGUAGGGg................... len:22 al:145
......................................................AAAGAAGUACAAGUGGUgG...................... len:19 al:63
......................................................AAAGAAGUACAAGUuGUAGGG.................... len:21 al:8
......................................................AAAGAAGUACAAGUGGUAGGGuG.................. len:23 al:9
......................................................AAAGAAGUACAAGUGGUAGuG.................... len:21 al:8
......................................................AAAGAAGUACgAGUGGUAGGGA................... len:22 al:3
......................................................AAAGAAGUACAAGUGGUg....................... len:18 al:9
......................................................AAAGAAGUACAAGUGGUAGGGAcG................. len:24 al:1
......................................................cAAGAAGUACAAGUGGUA....................... len:18 al:2
......................................................AAAGAAGUACAAGUGGUAGa..................... len:20 al:745
......................................................AgAGAAGUACAAGUGGUAG...................... len:19 al:82
......................................................AAAGAAGUACAAGUGGUAGGcA................... len:22 al:1
......................................................AAcGAAGUACAAGUGGUAGG..................... len:20 al:69
......................................................AAAGAAGUACAAGUGGcA....................... len:18 al:7
......................................................AAAGAAGUACAAuUGGUAGGG.................... len:21 al:4
......................................................AAAGAAGUACAAGUGGUcGG..................... len:20 al:3
......................................................AAAGAgGUACAAGUGGUA....................... len:18 al:5
......................................................AAAGAAGUACAAGUGGcAGG..................... len:20 al:14
......................................................AAcGAAGUACAAGUGGUAGGGA................... len:22 al:17
......................................................AAAGAAGUACAAGUGGUgGGG.................... len:21 al:227
......................................................AcAGAAGUACAAGUGGUA....................... len:18 al:1
......................................................AAgGAAGUACAAGUGGUAGG..................... len:20 al:28
......................................................AAAGAAGUAuAAGUGGU........................ len:17 al:1
......................................................AAAGAAGgACAAGUGGUAGGG.................... len:21 al:1
......................................................AAAGAAGUAaAAGUGGUAGG..................... len:20 al:1
......................................................AAAGAAGUACuAGUGGUAGGGA................... len:22 al:1
......................................................AgAGAAGUACAAGUGGUAGG..................... len:20 al:29
......................................................AAAGAAGUACAAGaGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUgCAAGUGGUAGGGA................... len:22 al:11
......................................................AAAGAAGUACAAGUGGUAGGG.................... len:21 al:83705
......................................................AAAGAAGUACAAGUGGUu....................... len:18 al:10
......................................................AAAGAAGUACAAGgGGUAGG..................... len:20 al:1
......................................................AAuGAAGUACAAGUGGUAG...................... len:19 al:9
......................................................AAAGAAGUACAAGUGGc........................ len:17 al:10
......................................................AcAGAAGUACAAGUGGU........................ len:17 al:1
......................................................AAAGAAGUACAAGUGGUAc...................... len:19 al:81
......................................................AAAGAAGUACAAGUGGUgGGGA................... len:22 al:3
......................................................AAAGAAGUAuAAGUGGUA....................... len:18 al:2
......................................................AAAGAAaUACAAGUGGUAG...................... len:19 al:7
......................................................AAAGAAGUACAAGUGGUAGaGA................... len:22 al:5
......................................................cAAGAAGUACAAGUGGUAG...................... len:19 al:38
......................................................AuAGAAGUACAAGUGGUAG...................... len:19 al:8
......................................................AAAGuAGUACAAGUGGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGaUAGG..................... len:20 al:2
......................................................AAAuAAGUACAAGUGGUAG...................... len:19 al:1
......................................................AAAGAAGUACgAGUGGUAG...................... len:19 al:95
......................................................AAAGAAGUACAuGUGGUAGGG.................... len:21 al:24
......................................................AAAGAAGUACAAGaGGUAGGG.................... len:21 al:19
......................................................AAgGAAGUACAAGUGGUAG...................... len:19 al:82
......................................................gAAGAAGUACAAGUGGUAGGGA................... len:22 al:7
......................................................AAAGAAGUACAAGUGGcAG...................... len:19 al:32
......................................................AAAGAAGUACAAGUGGUcG...................... len:19 al:3
......................................................AAAGAAGUACAAGUGGUAaGG.................... len:21 al:34
......................................................AAAGAAGUACAAGUGGUAGGGA................... len:22 al:1370
......................................................AAAGAAGUACAAGgGGUAG...................... len:19 al:1
......................................................AAAGAAGUACAAGUGGUuGGG.................... len:21 al:52
......................................................AAAGAAGcACAAGUGGUAG...................... len:19 al:23
......................................................AAAGAAGUACAAGcGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUACAAGUGGUAGGGc................... len:22 al:2557
......................................................AAAGAAGUACuAGUGGUAGG..................... len:20 al:8
......................................................AuAGAAGUACAAGUGGUAGGG.................... len:21 al:33
......................................................AAAGAAGaACAAGUGGUAG...................... len:19 al:3
......................................................AAAGgAGUACAAGUGGUAGGGA................... len:22 al:11
......................................................AAAGAAGUACAAGUGGgAGGG.................... len:21 al:6
......................................................AAAGAAGUACAAGcGGUAG...................... len:19 al:33
......................................................AAAGAAaUACAAGUGGUAGGG.................... len:21 al:45
......................................................AAAGAAGUACgAGUGGUAGG..................... len:20 al:44
......................................................AAAGAAGUACAAGUGGUAGcG.................... len:21 al:17
......................................................AAAGAAGcACAAGUGGUA....................... len:18 al:5
......................................................AAAGAAGUAuAAGUGGUAGG..................... len:20 al:6
......................................................AAAGAAGUACAAGUGGUAGGGuGG................. len:24 al:1
......................................................AAAGAAGUACAgGUGGUAGG..................... len:20 al:31
......................................................AAAGAAGUACAAGUGGgA....................... len:18 al:3
......................................................AcAGAAGUACAAGUGGUAGGG.................... len:21 al:58
......................................................AAAGAAGUACAAGUGGUAGGc.................... len:21 al:419
......................................................AAAGAAGUACAAGUGGUAuG..................... len:20 al:4
......................................................AAAGgAGUACAAGUGGUA....................... len:18 al:5
......................................................AAAGAgGUACAAGUGGUAGG..................... len:20 al:36
......................................................AAAGAAGUACAAGUcGUA....................... len:18 al:1
......................................................AAAGAAGUACAuGUGGUAG...................... len:19 al:6
......................................................AAAGAAGUACAAGUGGUAGc..................... len:20 al:33
......................................................AAAGAAGcACAAGUGGUAGG..................... len:20 al:14
......................................................AAcGAAGUACAAGUGGU........................ len:17 al:4
......................................................cAAGAAGUACAAGUGGUAGGG.................... len:21 al:211
......................................................AAAGAgGUACAAGUGGUAGGGA................... len:22 al:2
......................................................AAAGcAGUACAAGUGGUAG...................... len:19 al:12
......................................................AAAGAAGUACAAGUGGUAGGGAa.................. len:23 al:6
......................................................AAAGAAGUACAAGUGGUAGGGAGa................. len:24 al:1
......................................................AAAaAAGUACAAGUGGU........................ len:17 al:1
......................................................AAuGAAGUACAAGUGGUA....................... len:18 al:1
......................................................AAAGAAGUACAAGUGGUcGGG.................... len:21 al:12
......................................................AAAGAAGUACAAGUGaUAGGG.................... len:21 al:48
......................................................AAcGAAGUACAAGUGGUA....................... len:18 al:9
......................................................AAAGAAGUACAAGcGGUA....................... len:18 al:11
......................................................AAAGAcGUACAAGUGGUAGG..................... len:20 al:8
......................................................AAAaAAGUACAAGUGGUAGG..................... len:20 al:2
......................................................AAAcAAGUACAAGUGGUAGGG.................... len:21 al:2
......................................................AAAGAAGUACAAGUGGUAcG..................... len:20 al:7
......................................................AAAGAAGUACAAGcGGUAGG..................... len:20 al:11
......................................................AAAGAAGUACAAGUGGaA....................... len:18 al:5
......................................................AAAGAAGUACAAGUaGUAGGGA................... len:22 al:1
......................................................AAAGAAGUACAAGUaGUAGGG.................... len:21 al:56
......................................................AAAGAAGUACAAGUGGUAa...................... len:19 al:785
......................................................AAAGAAGUACAAGUGGUAGGu.................... len:21 al:3601
......................................................AAAGgAGUACAAGUGGUAG...................... len:19 al:71
......................................................AAAGAAGUACAAGUGGUAGG..................... len:20 al:9483
......................................................AAAGAAGUACgAGUGGUAGGG.................... len:21 al:389
......................................................AAAGAAGUACAAGUGGcAGGGA................... len:22 al:3
......................................................AAAGAAaUACAAGUGGUAGG..................... len:20 al:3
......................................................AAuGAAGUACAAGUGGUAGG..................... len:20 al:7
......................................................AAcGAAGUACAAGUGGUAGGG.................... len:21 al:680
......................................................AAAGAAGUcCAAGUGGUAG...................... len:19 al:4
......................................................AAAGAAGUACAAGUGGaAGGG.................... len:21 al:4
......................................................AAAGAgGUACAAGUGGUAGGG.................... len:21 al:279
......................................................AAAGAAGUACAAGUGGUAGGa.................... len:21 al:8047
......................................................AAgGAAGUACAAGUGGUAGGGA................... len:22 al:6
......................................................AAAGcAGUACAAGUGGUAGGG.................... len:21 al:63
......................................................AAcGAAGUACAAGUGGUAG...................... len:19 al:101
......................................................AAAGAAGUACAAaUGGUAG...................... len:19 al:3
......................................................AAAGAAGUACAAGUuGUAG...................... len:19 al:2
......................................................AgAGAAGUACAAGUGGUAGGGA................... len:22 al:3
......................................................AAAGAAGUACcAGUGGUAGGGA................... len:22 al:2
......................................................AAAGAAGUACAAGUGGUAaG..................... len:20 al:9
......................................................AAAaAAGUACAAGUGGUAG...................... len:19 al:3
......................................................AAAuAAGUACAAGUGGUAGG..................... len:20 al:3
......................................................AAAGAAGUACgAGUGGUA....................... len:18 al:6
......................................................AAAGuAGUACAAGUGGUAG...................... len:19 al:3
......................................................AAAGAAGUACAAGUGGUAG...................... len:19 al:17913
......................................................AAAGAAGUAaAAGUGGUAG...................... len:19 al:3
......................................................AAAGAAGcACAAGUGGUAGGGA................... len:22 al:1
......................................................gAAGAAGUACAAGUGGUAGG..................... len:20 al:40
......................................................AuAGAAGUACAAGUGGUA....................... len:18 al:3
......................................................AcAGAAGUACAAGUGGUAGG..................... len:20 al:8
......................................................AAAGAAGUACAAGUGGUAGGuA................... len:22 al:2
......................................................uAAGAAGUACAAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUACuAGUGGUAGGG.................... len:21 al:42
......................................................AAAGAAGUACAcGUGGUAGG..................... len:20 al:6
......................................................AAAGAAGUACgAGUGGU........................ len:17 al:2
......................................................AAAGuAGUACAAGUGGUAGGG.................... len:21 al:23
......................................................AAAGAAGUACAAGUGGUAcGG.................... len:21 al:3
......................................................AAAGAAGUACAAGUGGUAGGGu................... len:22 al:26857
......................................................AAAGAAGUACAAGUaGUA....................... len:18 al:1
......................................................AAAGAAGUACAcGUGGUAG...................... len:19 al:8
......................................................AAAGAAGUACAAaUGGUAGG..................... len:20 al:3
......................................................AcAGAAGUACAAGUGGUAG...................... len:19 al:13
......................................................AAAGAAGUACAAGUGGUAGu..................... len:20 al:358
......................................................AAgGAAGUACAAGUGGUA....................... len:18 al:4
......................................................AAAGAAGUACAAGUGGUgGG..................... len:20 al:20
......................................................AAAGAAGUACAgGUGGUAGGGA................... len:22 al:8
......................................................AAAGAcGUACAAGUGGUA....................... len:18 al:7
......................................................AAAGAAGUACAcGUGGUAGGG.................... len:21 al:39
......................................................AAAGAAGaACAAGUGGUAGGG.................... len:21 al:7
......................................................AAAGAAGUAaAAGUGGUAGGG.................... len:21 al:17
......................................................AAAGAAGUAuAAGUGGUAG...................... len:19 al:18
......................................................AAAGAgGUACAAGUGGUAG...................... len:19 al:56
......................................................AAAGAAGUcCAAGUGGUAGGG.................... len:21 al:46
......................................................AAAGAAGUACAAGUGG......................... len:16 al:9
......................................................AAAGAAGUACAAaUGGUAGGG.................... len:21 al:24
......................................................AAAGAAGUcCAAGUGGUAGG..................... len:20 al:4
......................................................AAAGAAGUAuAAGUGGUAGGG.................... len:21 al:84
......................................................cAAGAAGUACAAGUGGUAGG..................... len:20 al:17
......................................................AAAGAAGUACAAGUGGUAGGGAc.................. len:23 al:2
......................................................AAAGAAGUAgAAGUGGUAGGG.................... len:21 al:1
......................................................cAAGAAGUACAAGUGGUAGGGA................... len:22 al:2
.......................................................AgGAAGUACAAGUGGUAGGG.................... len:20 al:2
.......................................................AAGAAGUACAAGUGGUAGGGu................... len:21 al:41
.......................................................AAGAAGUACAAGUGGUAGG..................... len:19 al:19
.......................................................AAGAAGUACAAGUGGUAGGGg................... len:21 al:1
.......................................................AAGAAGUACAAGUGaUAGGG.................... len:20 al:1
.......................................................gAGAAGUACAAGUGGUAG...................... len:18 al:2
.......................................................AAGAAGUACAAGUGGUgGGG.................... len:20 al:1
.......................................................cAGAAGUACAAGUGGUAGGG.................... len:20 al:1
.......................................................AAGAAGUACcAGUGGUAG...................... len:18 al:1
.......................................................AAGAAGUACAAGUGGUAG...................... len:18 al:34
.......................................................AAGAAGUACAAGUGGUAGGG.................... len:20 al:96
.......................................................AAGAAGUACAgGUGGUAGGG.................... len:20 al:1
.......................................................AAGAAGUACAAGUGGUAGGu.................... len:20 al:1
.......................................................AAGAAGUACAAGUGGUAGGa.................... len:20 al:17
.......................................................AAGAAGUACAAGUGGUAGGGA................... len:21 al:2
.......................................................AAGAAGUACAAGUGGU........................ len:16 al:1
.......................................................AuGAAGUACAAGUGGUAGGG.................... len:20 al:2
.......................................................AAaAAGUACAAGUGGUAGGG.................... len:20 al:1
........................................................AGAAGUACcAGUGGUAG...................... len:17 al:1
........................................................AGAAGUACAAGUGGUAGc..................... len:18 al:1
........................................................AGAAGUACAAGUGGUAGGGu................... len:20 al:77
........................................................AGAAGUACAAGUGGUAGGGc................... len:20 al:4
........................................................AGAAGUACAAGUGGUAGG..................... len:18 al:25
........................................................AGAAGUACAAGUGGUAGGG.................... len:19 al:68
........................................................AGAgGUACAAGUGGUAGGG.................... len:19 al:1
........................................................cGAAGUACAAGUGGUAGGG.................... len:19 al:1
........................................................AGAAGUACAAGUGGUAGGc.................... len:19 al:2
........................................................AGAAGUACAAGUGGUAGGa.................... len:19 al:4
........................................................AGAAGUACAAGUGGUAGGGA................... len:20 al:2
........................................................AGAAGUACAAGUGGUAGGu.................... len:19 al:3
........................................................AGAAGUACAAGUGGUAG...................... len:17 al:1
........................................................AGAAGcACAAGUGGUAGGG.................... len:19 al:1
.........................................................GAAGUACAAGUGGUAGGGu................... len:19 al:4
.........................................................GAAGUACAAGUGGUAGGG.................... len:18 al:12
.........................................................GAAGUACAAGUGGUAGGa.................... len:18 al:1
.........................................................GAAGUACAAGUGGUAGaG.................... len:18 al:2
..........................................................AAGUACAAGUGGUAGGGu................... len:18 al:2
..........................................................AAGUACAAGUGGUAGGG.................... len:17 al:1
...........................................................AGUACAAGUGGUAGGu.................... len:16 al:1
...........................................................AGUACAAGUGGUAGGG.................... len:16 al:2
............................................................GUACAAGUGGUAGGG.................... len:15 al:1
...........................................................................AGGGGGUGUCgCCAAUUCG. len:19 al:1
...........................................................................AGGGGGUGUCgCCAAUUCGC len:20 al:4