Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000003:495066-495158 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/F-Ptua/output/04-Ptua-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_1159.ps.pdf
Locus Name: Cluster_1159
AAACUGCUGUCUGUGGACAUGGUGAAAGUCGCUUCAAUAAACAUUUGACUGUAUAUUGUACGACUCUCAUCGUGUCCAAGGCGGCCUCGACCG
.....(((((((.((((((((((((.(((((...(((((.(((......))).)))))..))))).)))))))))))))))))))........ (-40.80)
AAgCUGCUGUCUGUGGACA.......................................................................... len:19 al:1
...................UGGUGAAAGUCGCUUCAAUAAACAUUUGACU........................................... len:31 al:1
...................UGGUGAAgGUCGCUUCAAUAAACA.................................................. len:24 al:2
...................UGGUGAAAGUCGCUUCAAUAAACA.................................................. len:24 al:20
...................UGGUGAAAGUCGCUUCAAUAAAC................................................... len:23 al:4
...................UGGUGAAAGUCGCUUCgAUAAACA.................................................. len:24 al:1
...................UGGUGAAAGUCGCUUCAAUAAACu.................................................. len:24 al:1
...................UGGUGAAAGUCGCUUCAAUAAACAUUUGAC............................................ len:30 al:1
...................UGGUGAAAGUCaCUUCAAUAAACA.................................................. len:24 al:2
...................UGGUGAAAGUCGCUUCAAUAAACAUUUGA............................................. len:29 al:1
....................GGUGAAAGUCGCUUCAAUAAACAUUUGACUG.......................................... len:31 al:1
....................GGUGAAAGUCGCUUCAAUAAcCA.................................................. len:23 al:1
....................GGUGAgAGUCGCUUCAAUAAAC................................................... len:22 al:1
....................GGUGAAAGUCGCUUCAAUAAACAUUUGAC............................................ len:29 al:1
....................GGUGAAAGUCGCUUCAAUAAACAUUUGA............................................. len:28 al:3
....................GGUGAAAGUCGCUUCAgUAAACA.................................................. len:23 al:1
....................GGUGAAAGUCGCUUCAAUAAACA.................................................. len:23 al:64
....................GGUGAAAGUCGCUcCAAUAAACA.................................................. len:23 al:1
....................GGUGAAAGUCGCUUCgAUAAACA.................................................. len:23 al:2
....................GGUGAAAGUCGCUUCAAUAAACAUUUGu............................................. len:28 al:1
....................GGUGAAAGUCGCUUCAAUAAACAUUUGACU........................................... len:30 al:3
....................GGUGAAAGUCGCUUCAAUAAACAUU................................................ len:25 al:1
....................GGUGAAAGUCGCUUCAAUAAACu.................................................. len:23 al:4
....................GGUGAAAGUCGCUaCAAUAAACA.................................................. len:23 al:1
....................GGUGAAAGUCGCUUCAAUAAAC................................................... len:22 al:12
....................GGUGAAAGUCGCUUCAAUAAACAUUa............................................... len:26 al:1
.......................GAAAGUCGCUUCAAUAAACAUUUGA............................................. len:25 al:1
.............................CGCUUCAAUAAAaAUUUGACUGUAUAUUGUA................................. len:31 al:1
........................................ACAUUUGACUGUAUAUUGUACGACU............................ len:25 al:2
...........................................UUUGACUGUAUAUUGUACGACUCUCAUCGUG................... len:31 al:6
...........................................UUUGACUGUAUAUUGUACGACUCUCAUCGUa................... len:31 al:1
............................................UUGACUGUAUAUUGUACGACUCUCAUCGU.................... len:29 al:2
.............................................UGACUGUAUAUUGUACGACUCUCAUCGU.................... len:28 al:1
.............................................UGACUGUAUAUUGUACGACUCUCAUCGUG................... len:29 al:2
.................................................UGUAUAUUGUACGACUCUCAUCGU.................... len:24 al:1
..................................................GUAUAUUGUACGACUCUCAUCGU.................... len:23 al:2
..................................................cUAUAUUGUACGACUCUCAUCGU.................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGUC................. len:25 al:1
...................................................UAUAUUGUACGACUCaCAUCGUGU.................. len:24 al:1
...................................................UuUAUUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUUGUACGACUCcCAUCGUG................... len:23 al:2
...................................................UAUAUUGUACGACUCUCAUC...................... len:20 al:204
...................................................UAUAUUGUACGACUCUCAUCGUG................... len:23 al:501
...................................................UAUAUUGUACGACUCUCAUCG..................... len:21 al:22
...................................................UAUAUcGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAcUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUaGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACcCUCAUCGUG................... len:23 al:2
...................................................UAUAUcGUACGACUCUCAUCGU.................... len:22 al:6
...................................................UAUAUUGUACGACUCUCAc....................... len:19 al:7
...................................................UAgAUUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUUGUACGACUCUCAUCGUaU.................. len:24 al:8
...................................................cAUAUUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUUGUACGACUCUCAUCGUuU.................. len:24 al:14
...................................................UAUAUUGUACGACUCUCAUCGU.................... len:22 al:3929
...................................................UAUAUUGUACGACUCUCAUCGUGUa................. len:25 al:3
...................................................UAUAUUGUACGACUCUCAUCGUGUu................. len:25 al:3
...................................................UAUAUUGUACaACUCUCAUCGU.................... len:22 al:2
...................................................UAUAUUGUACGACUCUC......................... len:17 al:1
...................................................UAUAUUGUgCGACUCUCAUCGUGU.................. len:24 al:3
...................................................UAUAUUGUACGACcCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUUGUACGACUCgCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACaCUCAUCGU.................... len:22 al:2
...................................................UAUAUUGUACGACUCUCAUCcU.................... len:22 al:2
...................................................UAUAUUGUACGACUCUCuUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGgG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUaGU.................... len:22 al:1
...................................................aAUAUUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUUGUACGACUCaCAUCGU.................... len:22 al:2
...................................................UAUAUUGUACGgCUCUCAUCGU.................... len:22 al:18
...................................................UAUAUUGUACGACUCUCAUuGU.................... len:22 al:51
...................................................UAUAUUGUACGAuUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGcCUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCaU.................... len:22 al:82
...................................................UAUAUUGUACGACUCUCAUCGa.................... len:22 al:49
...................................................UgUAUUGUACGACUCUCAUCGU.................... len:22 al:7
...................................................UAUAUUGUACuACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGcGU.................. len:24 al:2
...................................................UAUAUUGUACGACUCUCAUa...................... len:20 al:1
...................................................UAUAUUGUACGACUCUCA........................ len:18 al:20
...................................................UAUAUUGUACGACUCUCAcCGU.................... len:22 al:10
...................................................UAUAUUGUACGACUCUCAUCGUGU.................. len:24 al:267
...................................................UAUAUUGUACGACUCcCAUCGUGU.................. len:24 al:3
...................................................UAUAUUGUACGACUCU.......................... len:16 al:2
...................................................UgUAUUGUACGACUCUCAUCGUGU.................. len:24 al:2
...................................................UAUAUUGUACGACUCcCAUCGU.................... len:22 al:17
...................................................UAUAUUGUcCGACUCUCAUCGU.................... len:22 al:2
...................................................UAUAUUGUACGACUCUCAgC...................... len:20 al:1
...................................................UAUAUUGUACGACUCUCgUCGU.................... len:22 al:9
...................................................UAUAUUGUACGACUCUCAUCGUu................... len:23 al:227
...................................................UAUAUUGUACGACUCUCAUu...................... len:20 al:1
...................................................UAUAUUGUACGACUCUCgUCGUGU.................. len:24 al:1
...................................................aAUAUUGUACGACUCUCAUCGU.................... len:22 al:11
...................................................UAUAUcGUACGACUCUCAUCGUGU.................. len:24 al:2
...................................................UuUAUUGUACGACUCUCAUCGU.................... len:22 al:2
...................................................UAUAUUGUACGACUCUCAUCGUa................... len:23 al:37
...................................................UcUAUUGUACGACUCUCAUCGU.................... len:22 al:6
...................................................UAUAUUGUcCGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUUGUACGACUCUCAaCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGc.................... len:22 al:327
...................................................UAUAUUGcACGACUCUCAUCGU.................... len:22 al:5
...................................................UAUAUUGUACGACUCcCAUC...................... len:20 al:2
...................................................UAUAUUGcACGACUCUCAUC...................... len:20 al:1
...................................................UAUAUUGUACGACUuUCAUC...................... len:20 al:1
...................................................UcUAUUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUgUUGUACGACUCUCAUCGU.................... len:22 al:7
...................................................UAUAUUGUgCGACUCUCAUCGU.................... len:22 al:6
...................................................cAUAUUGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACcACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAgUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUg...................... len:20 al:1
...................................................UAUAcUGUACGACUCUCAUCGU.................... len:22 al:11
...................................................UAUAUUGUACGACUCUCAUuGUG................... len:23 al:2
...................................................UAUAUUGUACaACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACcCUCAUCGU.................... len:22 al:22
...................................................UAUAUUGUACGACUCUCAUCGg.................... len:22 al:28
...................................................UAUAUUaUACGACUCUCAUCGU.................... len:22 al:3
...................................................UAUAUUGUACGgCUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUuUCAUCGUG................... len:23 al:1
...................................................UAUcUUGUACGACUCUCAUCGU.................... len:22 al:8
...................................................aAUAUUGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGc.................. len:24 al:18
...................................................UAUAUUGUACGACUCUCAUCGUGa.................. len:24 al:7
...................................................UAUAUUGUAuGACUCUCAUC...................... len:20 al:1
...................................................UAUAUUGUACGACaCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUCGUc................... len:23 al:17
...................................................UAUAUUGaACGACUCUCAU....................... len:19 al:1
...................................................cAUAUUGUACGACUCUCAUC...................... len:20 al:1
...................................................UAUAUUGUAuGACUCUCAUCGU.................... len:22 al:7
...................................................UAUAUUGUACGACUCUCAUCGcG................... len:23 al:3
...................................................UAUAUUGUACGACUCUCAU....................... len:19 al:52
...................................................UAcAUUGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUaUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAcAUUGUACGACUCUCAUCGU.................... len:22 al:2
...................................................cAUAUUGUACGACUCUCAUCGU.................... len:22 al:9
....................................................AUAUUGUACGACUCUCAUCGUGU.................. len:23 al:2
....................................................AUAUUGUACGACUCUCAUCGUG................... len:22 al:3
....................................................AUAUUGUACGACUCUCAUCG..................... len:20 al:1
....................................................AUAUUGUACGACUCUCAUCGU.................... len:21 al:4
....................................................AUAUUGUACGACUCUCAUC...................... len:19 al:2
....................................................AUAUUGUACGACUCUCAUCGUa................... len:22 al:1
.....................................................UAUUGUACGACUCUCAUCGUG................... len:21 al:2
.....................................................UAUUGUACGACUCUCAUC...................... len:18 al:1
.....................................................UAUUGUACGACUCUCAUCGU.................... len:20 al:7
......................................................AUUGUACGACUCUCAUCGU.................... len:19 al:1
......................................................AUUGUACGACUCUCAUCGUG................... len:20 al:1
......................................................AUUGUACGACUCUCAUCGc.................... len:19 al:1
..........................................................................UCCAAGGCaGCCUCGACCG len:19 al:2